HEADER OXIDOREDUCTASE 26-MAR-06 2CIY TITLE CHLOROPEROXIDASE COMPLEXED WITH CYANIDE AND DMSO COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHLOROPEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 21-319; COMPND 5 SYNONYM: CHLORIDE PEROXIDASE, CPO; COMPND 6 EC: 1.11.1.10 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDARIOMYCES FUMAGO; SOURCE 3 ORGANISM_TAXID: 5474; SOURCE 4 OTHER_DETAILS: LEPTOXYPHIUM FUMAGO KEYWDS OXIDOREDUCTASE, HEME, IRON, CHLORIDE, MANGANESE, PEROXIDASE, KEYWDS 2 PYRROLIDONE CARBOXYLIC ACID, GLYCOPROTEIN, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.KUHNEL,W.BLANKENFELDT,J.TERNER,I.SCHLICHTING REVDAT 6 13-DEC-23 2CIY 1 HETSYN REVDAT 5 29-JUL-20 2CIY 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 11-MAR-20 2CIY 1 SEQRES LINK REVDAT 3 24-FEB-09 2CIY 1 VERSN REVDAT 2 16-AUG-06 2CIY 1 JRNL REVDAT 1 12-JUN-06 2CIY 0 JRNL AUTH K.KUHNEL,W.BLANKENFELDT,J.TERNER,I.SCHLICHTING JRNL TITL CRYSTAL STRUCTURES OF CHLOROPEROXIDASE WITH ITS BOUND JRNL TITL 2 SUBSTRATES AND COMPLEXED WITH FORMATE, ACETATE, AND NITRATE. JRNL REF J.BIOL.CHEM. V. 281 23990 2006 JRNL REFN ISSN 0021-9258 JRNL PMID 16790441 JRNL DOI 10.1074/JBC.M603166200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44459 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2316 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 269 REMARK 3 SOLVENT ATOMS : 398 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.52000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.704 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2738 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3777 ; 1.372 ; 2.088 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 5.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;34.768 ;24.790 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 330 ;12.074 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.230 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 437 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2037 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1348 ; 0.216 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1940 ; 0.316 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 293 ; 0.124 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.230 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.113 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1537 ; 0.616 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2489 ; 1.079 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 1.828 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1288 ; 2.867 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1290028296. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 64.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.34000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1CPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLISATION CONDITIONS: 22 % PEG REMARK 280 3000, 0.1 M KBR, 0.1 M CITRATE PH 3.6 CRYSTALS WERE SOAKED IN 50 REMARK 280 MM KCN, 200 MM CYCLOPENTANEDIONE, 10 % DMSO, 22 % PEG3000, 0.1 M REMARK 280 SODIUM CITRATE PH 6 FOR 10 MIN AT ROOM TMEPERATURE, PH 6.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.55500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.55500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.10500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.51500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.10500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.51500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.55500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.10500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.51500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 50.55500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.10500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.51500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2013 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2124 O HOH A 2125 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 102 -112.92 -144.87 REMARK 500 PRO A 220 43.21 -76.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2045 DISTANCE = 6.26 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 396 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 29 SG REMARK 620 2 HEM A 396 NA 96.6 REMARK 620 3 HEM A 396 NB 95.2 90.2 REMARK 620 4 HEM A 396 NC 89.8 173.6 89.3 REMARK 620 5 HEM A 396 ND 91.4 89.4 173.4 90.3 REMARK 620 6 CYN A1802 C 175.6 82.0 80.7 91.6 92.7 REMARK 620 7 CYN A1802 N 170.3 73.7 84.5 99.9 89.0 9.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 104 OE2 REMARK 620 2 HIS A 105 O 83.4 REMARK 620 3 SER A 108 OG 172.8 101.3 REMARK 620 4 HEM A 396 O1A 105.5 89.4 80.1 REMARK 620 5 HOH A2367 O 84.3 166.7 91.4 89.2 REMARK 620 6 HOH A2368 O 87.9 92.4 86.5 166.6 92.1 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: OLIGOSACCHARIDE METABOLISM REMARK 630 MOLECULE NAME: ALPHA-D-MANNOPYRANOSE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 MAN A 738 REMARK 630 MAN A 739 REMARK 630 MAN A 741 REMARK 630 MAN A 742 REMARK 630 MAN A 750 REMARK 630 MAN A 751 REMARK 630 MAN A 752 REMARK 630 MAN A 754 REMARK 630 MAN A 771 REMARK 630 MAN A 777 REMARK 630 MAN A 793 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: NULL REMARK 630 DETAILS: OLIGOSACCHARIDE REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CIV RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE BROMIDE COMPLEX REMARK 900 RELATED ID: 2CIW RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE IODIDE COMPLEX REMARK 900 RELATED ID: 2CIX RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH CYCLOPENTANEDIONE REMARK 900 RELATED ID: 2CIZ RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH ACETATE REMARK 900 RELATED ID: 2CJ0 RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH NITRATE REMARK 900 RELATED ID: 2CJ1 RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH FORMATE ( ETHYLENE GLYCOL REMARK 900 CRYOPROTECTANT) REMARK 900 RELATED ID: 2CJ2 RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE COMPLEXED WITH FORMATE (SUGAR CRYOPROTECTANT) REMARK 900 RELATED ID: 1CPO RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE REMARK 900 RELATED ID: 2CPO RELATED DB: PDB REMARK 900 CHLOROPEROXIDASE DBREF 2CIY A 0 298 UNP P04963 PRXC_CALFU 21 319 SEQRES 1 A 299 PCA GLU PRO GLY SER GLY ILE GLY TYR PRO TYR ASP ASN SEQRES 2 A 299 ASN THR LEU PRO TYR VAL ALA PRO GLY PRO THR ASP SER SEQRES 3 A 299 ARG ALA PRO CYS PRO ALA LEU ASN ALA LEU ALA ASN HIS SEQRES 4 A 299 GLY TYR ILE PRO HIS ASP GLY ARG ALA ILE SER ARG GLU SEQRES 5 A 299 THR LEU GLN ASN ALA PHE LEU ASN HIS MET GLY ILE ALA SEQRES 6 A 299 ASN SER VAL ILE GLU LEU ALA LEU THR ASN ALA PHE VAL SEQRES 7 A 299 VAL CYS GLU TYR VAL THR GLY SER ASP CYS GLY ASP SER SEQRES 8 A 299 LEU VAL ASN LEU THR LEU LEU ALA GLU PRO HIS ALA PHE SEQRES 9 A 299 GLU HIS ASP HIS SER PHE SER ARG LYS ASP TYR LYS GLN SEQRES 10 A 299 GLY VAL ALA ASN SER ASN ASP PHE ILE ASP ASN ARG ASN SEQRES 11 A 299 PHE ASP ALA GLU THR PHE GLN THR SER LEU ASP VAL VAL SEQRES 12 A 299 ALA GLY LYS THR HIS PHE ASP TYR ALA ASP MET ASN GLU SEQRES 13 A 299 ILE ARG LEU GLN ARG GLU SER LEU SER ASN GLU LEU ASP SEQRES 14 A 299 PHE PRO GLY TRP PHE THR GLU SER LYS PRO ILE GLN ASN SEQRES 15 A 299 VAL GLU SER GLY PHE ILE PHE ALA LEU VAL SER ASP PHE SEQRES 16 A 299 ASN LEU PRO ASP ASN ASP GLU ASN PRO LEU VAL ARG ILE SEQRES 17 A 299 ASP TRP TRP LYS TYR TRP PHE THR ASN GLU SER PHE PRO SEQRES 18 A 299 TYR HIS LEU GLY TRP HIS PRO PRO SER PRO ALA ARG GLU SEQRES 19 A 299 ILE GLU PHE VAL THR SER ALA SER SER ALA VAL LEU ALA SEQRES 20 A 299 ALA SER VAL THR SER THR PRO SER SER LEU PRO SER GLY SEQRES 21 A 299 ALA ILE GLY PRO GLY ALA GLU ALA VAL PRO LEU SER PHE SEQRES 22 A 299 ALA SER THR MET THR PRO PHE LEU LEU ALA THR ASN ALA SEQRES 23 A 299 PRO TYR TYR ALA GLN ASP PRO THR LEU GLY PRO ASN ASP MODRES 2CIY ASN A 12 ASN GLYCOSYLATION SITE MODRES 2CIY ASN A 93 ASN GLYCOSYLATION SITE MODRES 2CIY ASN A 216 ASN GLYCOSYLATION SITE MODRES 2CIY THR A 238 THR GLYCOSYLATION SITE MODRES 2CIY SER A 239 SER GLYCOSYLATION SITE MODRES 2CIY SER A 241 SER GLYCOSYLATION SITE MODRES 2CIY SER A 242 SER GLYCOSYLATION SITE MODRES 2CIY THR A 250 THR GLYCOSYLATION SITE MODRES 2CIY SER A 251 SER GLYCOSYLATION SITE MODRES 2CIY THR A 252 THR GLYCOSYLATION SITE MODRES 2CIY SER A 254 SER GLYCOSYLATION SITE MODRES 2CIY SER A 271 SER GLYCOSYLATION SITE MODRES 2CIY THR A 277 THR GLYCOSYLATION SITE MODRES 2CIY THR A 283 THR GLYCOSYLATION SITE MODRES 2CIY THR A 293 THR GLYCOSYLATION SITE MODRES 2CIY PCA A 0 GLU PYROGLUTAMIC ACID HET PCA A 0 8 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET MAN D 1 11 HET MAN D 2 11 HET MN A 301 1 HET HEM A 396 43 HET NAG A 512 14 HET MAN A 738 11 HET MAN A 739 11 HET MAN A 741 11 HET MAN A 742 22 HET MAN A 750 11 HET MAN A 751 11 HET MAN A 752 11 HET MAN A 754 11 HET MAN A 771 11 HET MAN A 777 11 HET MAN A 793 11 HET BR A 800 1 HET BR A 801 1 HET EDO A 802 4 HET CYN A1802 2 HET DMS A3036 4 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM BR BROMIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CYN CYANIDE ION HETNAM DMS DIMETHYL SULFOXIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 5(C8 H15 N O6) FORMUL 4 MAN 13(C6 H12 O6) FORMUL 5 MN MN 2+ FORMUL 6 HEM C34 H32 FE N4 O4 FORMUL 19 BR 2(BR 1-) FORMUL 21 EDO C2 H6 O2 FORMUL 22 CYN C N 1- FORMUL 23 DMS C2 H6 O S FORMUL 24 HOH *398(H2 O) HELIX 1 1 GLU A 1 GLY A 5 5 5 HELIX 2 2 CYS A 29 HIS A 38 1 10 HELIX 3 3 SER A 49 GLY A 62 1 14 HELIX 4 4 ALA A 64 VAL A 67 5 4 HELIX 5 5 ILE A 68 GLY A 84 1 17 HELIX 6 6 THR A 95 GLU A 99 5 5 HELIX 7 7 ASP A 131 ASP A 140 1 10 HELIX 8 8 VAL A 141 ALA A 143 5 3 HELIX 9 9 ASP A 149 ASP A 168 1 20 HELIX 10 10 SER A 176 SER A 192 1 17 HELIX 11 11 ILE A 207 GLU A 217 1 11 HELIX 12 12 PRO A 220 GLY A 224 5 5 HELIX 13 13 GLU A 233 ALA A 247 1 15 SHEET 1 AA 2 ARG A 46 ILE A 48 0 SHEET 2 AA 2 LEU A 91 ASN A 93 -1 O LEU A 91 N ILE A 48 SHEET 1 AB 2 HIS A 147 PHE A 148 0 SHEET 2 AB 2 VAL A 205 ARG A 206 -1 O VAL A 205 N PHE A 148 SSBOND 1 CYS A 79 CYS A 87 1555 1555 2.05 LINK C PCA A 0 N GLU A 1 1555 1555 1.33 LINK ND2 ASN A 12 C1 NAG A 512 1555 1555 1.45 LINK ND2 ASN A 93 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 216 C1 NAG C 1 1555 1555 1.46 LINK OG1 THR A 238 C1 MAN A 738 1555 1555 1.45 LINK OG SER A 239 C1 MAN A 739 1555 1555 1.44 LINK OG SER A 241 C1 MAN A 741 1555 1555 1.44 LINK OG ASER A 242 C1 AMAN A 742 1555 1555 1.44 LINK OG BSER A 242 C1 BMAN A 742 1555 1555 1.45 LINK OG1 THR A 250 C1 MAN A 750 1555 1555 1.45 LINK OG SER A 251 C1 MAN A 751 1555 1555 1.45 LINK OG1 THR A 252 C1 MAN A 752 1555 1555 1.45 LINK OG SER A 254 C1 MAN A 754 1555 1555 1.45 LINK OG SER A 271 C1 MAN A 771 1555 1555 1.45 LINK OG1 THR A 277 C1 MAN A 777 1555 1555 1.45 LINK OG1 THR A 283 C1 MAN D 1 1555 1555 1.44 LINK OG1 THR A 293 C1 MAN A 793 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O2 MAN D 1 C1 MAN D 2 1555 1555 1.44 LINK SG CYS A 29 FE HEM A 396 1555 1555 2.38 LINK OE2 GLU A 104 MN MN A 301 1555 1555 1.99 LINK O HIS A 105 MN MN A 301 1555 1555 2.00 LINK OG SER A 108 MN MN A 301 1555 1555 2.00 LINK MN MN A 301 O1A HEM A 396 1555 1555 2.00 LINK MN MN A 301 O HOH A2367 1555 1555 2.32 LINK MN MN A 301 O HOH A2368 1555 1555 2.32 LINK FE HEM A 396 C CYN A1802 1555 1555 1.92 LINK FE HEM A 396 N CYN A1802 1555 1555 3.02 CISPEP 1 TYR A 8 PRO A 9 0 -1.96 CISPEP 2 SER A 229 PRO A 230 0 0.80 CISPEP 3 ASP A 291 PRO A 292 0 4.72 CRYST1 58.210 151.030 101.110 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017179 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009890 0.00000 HETATM 1 N PCA A 0 7.168 15.652 17.913 1.00 13.27 N HETATM 2 CA PCA A 0 7.400 15.868 19.345 1.00 13.04 C HETATM 3 CB PCA A 0 6.300 16.786 19.879 1.00 13.53 C HETATM 4 CG PCA A 0 5.852 17.609 18.668 1.00 13.86 C HETATM 5 CD PCA A 0 6.386 16.805 17.505 1.00 13.75 C HETATM 6 OE PCA A 0 6.163 17.103 16.323 1.00 13.44 O HETATM 7 C PCA A 0 7.446 14.543 20.099 1.00 12.85 C HETATM 8 O PCA A 0 7.006 13.507 19.582 1.00 12.12 O