HEADER RNA BINDING PROTEIN 04-APR-06 2CJK TITLE STRUCTURE OF THE RNA BINDING DOMAIN OF HRP1 IN COMPLEX WITH RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR POLYADENYLATED RNA-BINDING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA-BINDING DOMAIN, RESIDUES 156-322; COMPND 5 SYNONYM: HRP1, CLEAVAGE FACTOR IB, CFIB; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-R(*UP*AP*UP*AP*UP*AP*UP*AP)-3'; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: POLYADENYLATION ENHANCEMENT ELEMENT; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 12 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 13 ORGANISM_TAXID: 4932 KEYWDS HRP1, RNA-BINDING, RNA PROCESSING, MRNA PROCESSING, NONSENSE-MEDIATED KEYWDS 2 MRNA DECAY, CLEAVAGE, POLYADENYLATION, NUCLEAR PROTEIN, RNA-BINDING KEYWDS 3 PROTEIN, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR J.M.PEREZ-CANADILLAS REVDAT 4 02-MAY-18 2CJK 1 JRNL REMARK REVDAT 3 24-FEB-09 2CJK 1 VERSN REVDAT 2 20-DEC-06 2CJK 1 JRNL REVDAT 1 28-JUN-06 2CJK 0 JRNL AUTH J.M.PEREZ-CANADILLAS JRNL TITL GRABBING THE MESSAGE: STRUCTURAL BASIS OF MRNA 3'UTR JRNL TITL 2 RECOGNITION BY HRP1. JRNL REF EMBO J. V. 25 3167 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16794580 JRNL DOI 10.1038/SJ.EMBOJ.7601190 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH REMARK 3 AUTHORS : SCHWIETERS REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CJK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-APR-06. REMARK 100 THE DEPOSITION ID IS D_1290028407. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0; 298.0; 298.0 REMARK 210 PH : 6.0; 6.0; 6.0 REMARK 210 IONIC STRENGTH : 25; 25; 25 REMARK 210 PRESSURE : 1.0 ATM; 1.0 ATM; 1.0 ATM REMARK 210 SAMPLE CONTENTS : 95% WATER/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N-NOESY-HSQC; 13C-NOESY- HSQC; REMARK 210 TOCSY AND COSY; HNCA; HNCOCA; REMARK 210 CBCACOHN; HCCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, ANSIG, XWIN-NMR REMARK 210 METHOD USED : XPLOR-NIH, CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : COMPARISON BETWEEN ENERGY- REMARK 210 ORDERED RMSD PROFILES AND TOTAL REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NONE REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 216 HE2 HIS A 221 1.24 REMARK 500 H PHE A 162 O LYS A 231 1.56 REMARK 500 H MET A 161 O LEU A 205 1.57 REMARK 500 H ILE A 163 O GLY A 203 1.58 REMARK 500 O VAL A 216 NE2 HIS A 221 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 191 55.38 73.13 REMARK 500 1 HIS A 221 111.20 81.65 REMARK 500 1 ASP A 253 -3.70 74.16 REMARK 500 1 ARG A 255 115.25 54.56 REMARK 500 1 ILE A 269 86.99 67.55 REMARK 500 1 MET A 275 -80.28 71.02 REMARK 500 1 LEU A 276 49.42 37.95 REMARK 500 1 ASN A 303 70.58 -100.54 REMARK 500 1 PHE A 308 -72.57 -107.40 REMARK 500 1 ARG A 311 7.86 -150.78 REMARK 500 1 LYS A 312 138.53 56.71 REMARK 500 2 VAL A 185 102.87 64.99 REMARK 500 2 MET A 191 -71.09 67.21 REMARK 500 2 LYS A 192 133.71 59.81 REMARK 500 2 ALA A 195 -75.63 -75.46 REMARK 500 2 ARG A 200 -41.88 74.94 REMARK 500 2 HIS A 221 122.30 77.61 REMARK 500 2 ARG A 255 125.68 56.34 REMARK 500 2 ILE A 269 97.78 28.91 REMARK 500 2 ASP A 271 94.02 -164.83 REMARK 500 2 MET A 275 114.75 93.32 REMARK 500 2 THR A 280 46.30 169.66 REMARK 500 2 LYS A 304 -74.89 67.47 REMARK 500 2 PHE A 308 -107.98 -140.62 REMARK 500 2 ASP A 310 -29.59 176.70 REMARK 500 3 SER A 158 8.61 -150.50 REMARK 500 3 TRP A 168 35.05 33.32 REMARK 500 3 ASP A 169 22.48 -175.72 REMARK 500 3 THR A 171 131.23 62.33 REMARK 500 3 THR A 242 -75.57 -31.31 REMARK 500 3 ARG A 255 124.29 62.21 REMARK 500 3 ILE A 269 80.68 69.39 REMARK 500 3 ASP A 271 86.48 -157.86 REMARK 500 3 MET A 275 119.92 81.24 REMARK 500 3 LYS A 278 -46.94 -161.77 REMARK 500 3 ASP A 279 -79.93 -131.19 REMARK 500 3 LYS A 304 -72.76 69.20 REMARK 500 3 LYS A 309 -165.04 -109.87 REMARK 500 4 TRP A 168 75.95 -60.27 REMARK 500 4 ASP A 169 -22.31 178.28 REMARK 500 4 VAL A 185 89.86 67.47 REMARK 500 4 ARG A 255 141.84 60.97 REMARK 500 4 ILE A 269 83.99 69.70 REMARK 500 4 ASP A 271 93.10 -161.63 REMARK 500 4 MET A 275 115.48 95.00 REMARK 500 4 LYS A 278 -49.38 -150.39 REMARK 500 4 ASP A 279 -54.32 -150.38 REMARK 500 4 LYS A 304 -81.57 37.62 REMARK 500 4 PHE A 308 -109.37 -106.16 REMARK 500 4 ASP A 310 -27.57 -179.60 REMARK 500 REMARK 500 THIS ENTRY HAS 382 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2CJK A 156 322 UNP Q99383 HRP1_YEAST 156 322 DBREF 2CJK B 1 8 PDB 2CJK 2CJK 1 8 SEQRES 1 A 167 LYS GLU SER CYS LYS MET PHE ILE GLY GLY LEU ASN TRP SEQRES 2 A 167 ASP THR THR GLU ASP ASN LEU ARG GLU TYR PHE GLY LYS SEQRES 3 A 167 TYR GLY THR VAL THR ASP LEU LYS ILE MET LYS ASP PRO SEQRES 4 A 167 ALA THR GLY ARG SER ARG GLY PHE GLY PHE LEU SER PHE SEQRES 5 A 167 GLU LYS PRO SER SER VAL ASP GLU VAL VAL LYS THR GLN SEQRES 6 A 167 HIS ILE LEU ASP GLY LYS VAL ILE ASP PRO LYS ARG ALA SEQRES 7 A 167 ILE PRO ARG ASP GLU GLN ASP LYS THR GLY LYS ILE PHE SEQRES 8 A 167 VAL GLY GLY ILE GLY PRO ASP VAL ARG PRO LYS GLU PHE SEQRES 9 A 167 GLU GLU PHE PHE SER GLN TRP GLY THR ILE ILE ASP ALA SEQRES 10 A 167 GLN LEU MET LEU ASP LYS ASP THR GLY GLN SER ARG GLY SEQRES 11 A 167 PHE GLY PHE VAL THR TYR ASP SER ALA ASP ALA VAL ASP SEQRES 12 A 167 ARG VAL CYS GLN ASN LYS PHE ILE ASP PHE LYS ASP ARG SEQRES 13 A 167 LYS ILE GLU ILE LYS ARG ALA GLU PRO ARG HIS SEQRES 1 B 8 U A U A U A U A HELIX 1 1 THR A 171 GLY A 180 1 10 HELIX 2 2 PRO A 210 THR A 219 1 10 HELIX 3 3 PRO A 235 THR A 242 1 8 HELIX 4 4 ARG A 255 GLN A 265 1 11 HELIX 5 5 SER A 293 ASN A 303 1 11 SHEET 1 AA 4 VAL A 185 LYS A 189 0 SHEET 2 AA 4 GLY A 203 PHE A 207 -1 O PHE A 204 N LYS A 189 SHEET 3 AA 4 LYS A 160 ILE A 163 -1 O MET A 161 N LEU A 205 SHEET 4 AA 4 ILE A 228 LYS A 231 -1 O LYS A 231 N PHE A 162 SHEET 1 AB 4 ASP A 271 GLN A 273 0 SHEET 2 AB 4 GLY A 285 TYR A 291 -1 O PHE A 288 N GLN A 273 SHEET 3 AB 4 GLY A 243 ILE A 250 -1 O GLY A 243 N TYR A 291 SHEET 4 AB 4 ILE A 313 ARG A 317 -1 O GLU A 314 N GLY A 248 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1