HEADER HYDROLASE 14-APR-06 2CKC TITLE SOLUTION STRUCTURES OF THE BRK DOMAINS OF THE HUMAN CHROMO TITLE 2 HELICASE DOMAIN 7 AND 8, REVEALS STRUCTURAL SIMILARITY TITLE 3 WITH GYF DOMAIN SUGGESTING A ROLE IN PROTEIN INTERACTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRK, RESIDUES 1801-1860; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE CHD7, CHD-7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHISLIC; SOURCE 9 OTHER_DETAILS: SELF MADE CDNA LIBRARY OF MULTIPLE HUMAN SOURCE 10 CARCINOMA CELL LINES KEYWDS PROTEIN-PROTEIN INTERACTION, PHOSPHORYLATION, DISEASE KEYWDS 2 MUTATION, NUCLEOTIDE-BINDING, TRANSCRIPTION REGULATION, KEYWDS 3 TRANSCRIPTION ELONGATION, CHROMATIN REGULATOR, CHROMATIN KEYWDS 4 REMODELING, HELICASE, HYDROLASE, BRK DOMAIN, ATP-BINDING, KEYWDS 5 DNA-BINDING, TRANSCRIPTION, NUCLEAR PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR E.AB,R.N.DE JONG,T.DIERCKS,J.XIAOYUN,M.DANIELS,R.KAPTEIN, AUTHOR 2 G.E.FOLKERS REVDAT 2 24-FEB-09 2CKC 1 VERSN REVDAT 1 08-MAY-07 2CKC 0 JRNL AUTH E.AB,R.N.DE JONG,T.DIERCKS,J.XIAOYUN,M.DANIELS, JRNL AUTH 2 R.KAPTEIN,G.E.FOLKERS JRNL TITL SOLUTION STRUCTURES OF THE BRK DOMAINS OF THE JRNL TITL 2 HUMAN CHROMO HELICASE DOMAIN 7 AND 8, REVEALS JRNL TITL 3 STRUCTURAL SIMILARITY WITH GYF DOMAIN SUGGESTING A JRNL TITL 4 ROLE IN PROTEIN INTERACTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE- REMARK 3 KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN REMARK 3 THE JRNL CITATION ABOVE. REMARK 4 REMARK 4 2CKC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-APR-06. REMARK 100 THE PDBE ID CODE IS EBI-28376. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.0 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 150MM REMARK 210 PRESSURE : 1.0 REMARK 210 SAMPLE CONTENTS : 5% D2O/95% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HNCO;HNCACO;HNCACB; REMARK 210 CBCACONH;HBHACONH;HNCAHA; REMARK 210 CCONH;CCH-COSY;HCCH- REMARK 210 TOCSY;HNH-NOESY;HCH- REMARK 210 NOESY;CNH-NOESY;HH- REMARK 210 NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : CANDID IN CYANA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE REMARK 210 NMR SPECTROSCOPY ON 13C, 15N-LABELED HIS-TAGGED REMARK 210 CHROMODOMAIN HELICASE DNA BINDING PROTEIN 7 2564-2622 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2543 REMARK 465 GLY A 2544 REMARK 465 SER A 2545 REMARK 465 SER A 2546 REMARK 465 HIS A 2547 REMARK 465 HIS A 2548 REMARK 465 HIS A 2549 REMARK 465 HIS A 2550 REMARK 465 HIS A 2551 REMARK 465 HIS A 2552 REMARK 465 SER A 2553 REMARK 465 SER A 2554 REMARK 465 HIS A 2555 REMARK 465 MET A 2556 REMARK 465 LEU A 2557 REMARK 465 VAL A 2558 REMARK 465 PRO A 2559 REMARK 465 ARG A 2560 REMARK 465 GLY A 2561 REMARK 465 SER A 2562 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A2608 -87.13 -85.82 REMARK 500 1 ASN A2612 -98.53 42.23 REMARK 500 1 PHE A2617 -171.18 63.10 REMARK 500 1 SER A2618 24.98 -141.58 REMARK 500 2 TYR A2608 -167.62 -103.20 REMARK 500 2 VAL A2615 -52.04 -163.15 REMARK 500 2 LEU A2616 -72.88 -147.56 REMARK 500 3 SER A2607 -67.72 62.35 REMARK 500 3 TYR A2608 -80.04 -90.59 REMARK 500 3 ASN A2612 -69.87 -109.07 REMARK 500 3 ALA A2613 -41.78 -142.57 REMARK 500 3 PHE A2617 -76.18 -102.11 REMARK 500 3 GLN A2621 83.63 66.24 REMARK 500 4 PRO A2570 96.35 -68.17 REMARK 500 4 TYR A2608 -97.11 -128.36 REMARK 500 4 ASN A2612 -41.46 -142.96 REMARK 500 4 ALA A2613 -171.85 67.84 REMARK 500 4 VAL A2615 -78.89 -114.77 REMARK 500 4 GLN A2621 -40.57 72.79 REMARK 500 5 ALA A2613 -179.24 70.47 REMARK 500 6 SER A2607 -83.72 71.75 REMARK 500 6 TYR A2608 -176.44 177.71 REMARK 500 6 LEU A2616 -51.63 -143.30 REMARK 500 6 PHE A2617 113.60 -162.77 REMARK 500 7 SER A2618 91.39 -69.70 REMARK 500 7 SER A2619 -62.42 -140.69 REMARK 500 7 GLN A2621 76.26 65.21 REMARK 500 8 LYS A2611 47.52 -84.28 REMARK 500 8 SER A2619 -9.77 72.00 REMARK 500 8 GLN A2621 -64.52 -130.81 REMARK 500 9 TYR A2608 -169.31 -171.82 REMARK 500 9 LYS A2611 98.03 -64.80 REMARK 500 9 VAL A2615 -77.15 -133.76 REMARK 500 9 LEU A2616 -52.87 -158.73 REMARK 500 9 PHE A2617 -164.54 -116.36 REMARK 500 9 GLN A2621 75.04 71.81 REMARK 500 10 LEU A2616 90.90 66.46 REMARK 500 11 SER A2607 -57.16 75.53 REMARK 500 11 PRO A2610 100.82 -58.60 REMARK 500 11 ALA A2613 -71.25 -128.24 REMARK 500 12 PRO A2610 105.25 -55.98 REMARK 500 12 VAL A2615 90.32 64.84 REMARK 500 13 PHE A2617 70.00 72.37 REMARK 500 13 SER A2619 93.80 68.59 REMARK 500 14 TYR A2608 -164.77 -168.95 REMARK 500 14 PRO A2610 108.23 -50.07 REMARK 500 14 ASN A2612 -51.78 -121.26 REMARK 500 14 VAL A2615 77.34 63.53 REMARK 500 15 LEU A2616 79.07 62.15 REMARK 500 15 GLN A2621 -69.42 -108.81 REMARK 500 16 ASN A2612 -52.10 175.00 REMARK 500 16 SER A2619 -42.89 -130.53 REMARK 500 16 PHE A2620 79.24 -115.69 REMARK 500 16 GLN A2621 -64.64 75.03 REMARK 500 17 PHE A2617 -76.58 -134.94 REMARK 500 17 SER A2618 -92.50 35.77 REMARK 500 18 LEU A2616 -61.36 67.28 REMARK 500 19 TYR A2608 -75.33 -86.49 REMARK 500 20 SER A2607 42.72 -102.85 REMARK 500 20 TYR A2608 -73.05 -48.64 REMARK 500 20 ASN A2612 -71.71 67.94 REMARK 500 20 LEU A2616 -71.29 -99.68 REMARK 500 21 ALA A2613 171.81 68.29 REMARK 500 21 SER A2618 99.88 -69.86 REMARK 500 22 ALA A2613 110.23 -162.19 REMARK 500 22 SER A2619 20.71 -145.18 REMARK 500 23 LEU A2616 106.12 -42.94 REMARK 500 24 ASP A2614 -9.78 74.26 REMARK 500 24 VAL A2615 81.41 44.24 REMARK 500 25 SER A2607 -33.66 -178.77 REMARK 500 25 ALA A2613 74.12 -67.26 REMARK 500 25 ASP A2614 91.95 -179.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 20 ARG A2568 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2CKC A 2543 2562 PDB 2CKC 2CKC 2543 2562 DBREF 2CKC A 2563 2622 UNP Q9P2D1 CHD7_HUMAN 1801 1860 SEQRES 1 A 80 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER HIS SEQRES 2 A 80 MET LEU VAL PRO ARG GLY SER LEU ASP PRO ASP THR ARG SEQRES 3 A 80 ILE PRO VAL ILE ASN LEU GLU ASP GLY THR ARG LEU VAL SEQRES 4 A 80 GLY GLU ASP ALA PRO LYS ASN LYS ASP LEU VAL GLU TRP SEQRES 5 A 80 LEU LYS LEU HIS PRO THR TYR THR VAL ASP MET PRO SER SEQRES 6 A 80 TYR VAL PRO LYS ASN ALA ASP VAL LEU PHE SER SER PHE SEQRES 7 A 80 GLN LYS HELIX 1 1 LYS A 2587 HIS A 2598 1 12 SHEET 1 AA 3 THR A2578 LEU A2580 0 SHEET 2 AA 3 VAL A2571 ASN A2573 -1 O VAL A2571 N LEU A2580 SHEET 3 AA 3 TYR A2601 VAL A2603 -1 O THR A2602 N ILE A2572 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1