data_2CKH # _entry.id 2CKH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.382 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2CKH pdb_00002ckh 10.2210/pdb2ckh/pdb PDBE EBI-28504 ? ? WWPDB D_1290028504 ? ? # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2006-04-26 _pdbx_database_PDB_obs_spr.pdb_id 2CKH _pdbx_database_PDB_obs_spr.replace_pdb_id 2BZO _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1WM2 unspecified 'CRYSTAL STRUCTURE OF HUMAN SUMO-2 PROTEIN' PDB 1WM3 unspecified 'CRYSTAL STRUCTURE OF HUMAN SUMO-2 PROTEIN' PDB 1WZ0 unspecified 'SOLUTION STRUCTURE OF HUMAN SUMO-2 (SMT3B ), A UBIQUITIN-LIKE PROTEIN' PDB 2CKG unspecified 'THE STRUCTURE OF SENP1 SUMO-2 CO-COMPLEX SUGGESTS A STRUCTURAL BASIS FOR DISCRIMINATION BETWEEN SUMO PARALOGUES DURING PROCESSING' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CKH _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2006-04-18 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shen, L.N.' 1 'Dong, C.' 2 'Liu, H.' 3 'Hay, R.T.' 4 'Naismith, J.H.' 5 # _citation.id primary _citation.title 'The Structure of Senp1-Sumo-2 Complex Suggests a Structural Basis for Discrimination between Sumo Paralogues During Processing.' _citation.journal_abbrev Biochem.J. _citation.journal_volume 397 _citation.page_first 279 _citation.page_last ? _citation.year 2006 _citation.journal_id_ASTM BIJOAK _citation.country UK _citation.journal_id_ISSN 0264-6021 _citation.journal_id_CSD 0043 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16553580 _citation.pdbx_database_id_DOI 10.1042/BJ20052030 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shen, L.N.' 1 ? primary 'Dong, C.' 2 ? primary 'Liu, H.' 3 ? primary 'Naismith, J.H.' 4 ? primary 'Hay, R.T.' 5 ? # _cell.entry_id 2CKH _cell.length_a 143.376 _cell.length_b 143.376 _cell.length_c 71.886 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CKH _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SENTRIN-SPECIFIC PROTEASE 1' 26803.098 1 3.4.22.- ? 'PROTEASE DOMAIN, RESIDUES 419-643' 'COVALENTLY LINKED TO SUMO' 2 polymer man 'SMALL UBIQUITIN-RELATED MODIFIER 2' 9063.168 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'SENTERIN PROTEASE 1, SENTRIN/SUMO-SPECIFIC PROTEASE SENP1' 2 'SUMO2, SUMO-2, UBIQUITIN-LIKE PROTEIN SMT3B, SMT3 HOMOLOG 2, SENTRIN-2, HSMT3' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EFPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFF TKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKE FDTNGWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL ; ;EFPEITEEMEKEIKNVFRNGNQDEVLSEAFRLTITRKDIQTLNHLNWLNDEIINFYMNMLMERSKEKGLPSVHAFNTFFF TKLKTAGYQAVKRWTKKVDVFSVDILLVPIHLGVHWCLAVVDFRKKNITYYDSMGGINNEACRILLQYLKQESIDKKRKE FDTNGWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL ; A ? 2 'polypeptide(L)' no no NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PHE n 1 3 PRO n 1 4 GLU n 1 5 ILE n 1 6 THR n 1 7 GLU n 1 8 GLU n 1 9 MET n 1 10 GLU n 1 11 LYS n 1 12 GLU n 1 13 ILE n 1 14 LYS n 1 15 ASN n 1 16 VAL n 1 17 PHE n 1 18 ARG n 1 19 ASN n 1 20 GLY n 1 21 ASN n 1 22 GLN n 1 23 ASP n 1 24 GLU n 1 25 VAL n 1 26 LEU n 1 27 SER n 1 28 GLU n 1 29 ALA n 1 30 PHE n 1 31 ARG n 1 32 LEU n 1 33 THR n 1 34 ILE n 1 35 THR n 1 36 ARG n 1 37 LYS n 1 38 ASP n 1 39 ILE n 1 40 GLN n 1 41 THR n 1 42 LEU n 1 43 ASN n 1 44 HIS n 1 45 LEU n 1 46 ASN n 1 47 TRP n 1 48 LEU n 1 49 ASN n 1 50 ASP n 1 51 GLU n 1 52 ILE n 1 53 ILE n 1 54 ASN n 1 55 PHE n 1 56 TYR n 1 57 MET n 1 58 ASN n 1 59 MET n 1 60 LEU n 1 61 MET n 1 62 GLU n 1 63 ARG n 1 64 SER n 1 65 LYS n 1 66 GLU n 1 67 LYS n 1 68 GLY n 1 69 LEU n 1 70 PRO n 1 71 SER n 1 72 VAL n 1 73 HIS n 1 74 ALA n 1 75 PHE n 1 76 ASN n 1 77 THR n 1 78 PHE n 1 79 PHE n 1 80 PHE n 1 81 THR n 1 82 LYS n 1 83 LEU n 1 84 LYS n 1 85 THR n 1 86 ALA n 1 87 GLY n 1 88 TYR n 1 89 GLN n 1 90 ALA n 1 91 VAL n 1 92 LYS n 1 93 ARG n 1 94 TRP n 1 95 THR n 1 96 LYS n 1 97 LYS n 1 98 VAL n 1 99 ASP n 1 100 VAL n 1 101 PHE n 1 102 SER n 1 103 VAL n 1 104 ASP n 1 105 ILE n 1 106 LEU n 1 107 LEU n 1 108 VAL n 1 109 PRO n 1 110 ILE n 1 111 HIS n 1 112 LEU n 1 113 GLY n 1 114 VAL n 1 115 HIS n 1 116 TRP n 1 117 CYS n 1 118 LEU n 1 119 ALA n 1 120 VAL n 1 121 VAL n 1 122 ASP n 1 123 PHE n 1 124 ARG n 1 125 LYS n 1 126 LYS n 1 127 ASN n 1 128 ILE n 1 129 THR n 1 130 TYR n 1 131 TYR n 1 132 ASP n 1 133 SER n 1 134 MET n 1 135 GLY n 1 136 GLY n 1 137 ILE n 1 138 ASN n 1 139 ASN n 1 140 GLU n 1 141 ALA n 1 142 CYS n 1 143 ARG n 1 144 ILE n 1 145 LEU n 1 146 LEU n 1 147 GLN n 1 148 TYR n 1 149 LEU n 1 150 LYS n 1 151 GLN n 1 152 GLU n 1 153 SER n 1 154 ILE n 1 155 ASP n 1 156 LYS n 1 157 LYS n 1 158 ARG n 1 159 LYS n 1 160 GLU n 1 161 PHE n 1 162 ASP n 1 163 THR n 1 164 ASN n 1 165 GLY n 1 166 TRP n 1 167 GLN n 1 168 LEU n 1 169 PHE n 1 170 SER n 1 171 LYS n 1 172 LYS n 1 173 SER n 1 174 GLN n 1 175 ILE n 1 176 PRO n 1 177 GLN n 1 178 GLN n 1 179 MET n 1 180 ASN n 1 181 GLY n 1 182 SER n 1 183 ASP n 1 184 CYS n 1 185 GLY n 1 186 MET n 1 187 PHE n 1 188 ALA n 1 189 CYS n 1 190 LYS n 1 191 TYR n 1 192 ALA n 1 193 ASP n 1 194 CYS n 1 195 ILE n 1 196 THR n 1 197 LYS n 1 198 ASP n 1 199 ARG n 1 200 PRO n 1 201 ILE n 1 202 ASN n 1 203 PHE n 1 204 THR n 1 205 GLN n 1 206 GLN n 1 207 HIS n 1 208 MET n 1 209 PRO n 1 210 TYR n 1 211 PHE n 1 212 ARG n 1 213 LYS n 1 214 ARG n 1 215 MET n 1 216 VAL n 1 217 TRP n 1 218 GLU n 1 219 ILE n 1 220 LEU n 1 221 HIS n 1 222 ARG n 1 223 LYS n 1 224 LEU n 1 225 LEU n 2 1 ASN n 2 2 ASP n 2 3 HIS n 2 4 ILE n 2 5 ASN n 2 6 LEU n 2 7 LYS n 2 8 VAL n 2 9 ALA n 2 10 GLY n 2 11 GLN n 2 12 ASP n 2 13 GLY n 2 14 SER n 2 15 VAL n 2 16 VAL n 2 17 GLN n 2 18 PHE n 2 19 LYS n 2 20 ILE n 2 21 LYS n 2 22 ARG n 2 23 HIS n 2 24 THR n 2 25 PRO n 2 26 LEU n 2 27 SER n 2 28 LYS n 2 29 LEU n 2 30 MET n 2 31 LYS n 2 32 ALA n 2 33 TYR n 2 34 CYS n 2 35 GLU n 2 36 ARG n 2 37 GLN n 2 38 GLY n 2 39 LEU n 2 40 SER n 2 41 MET n 2 42 ARG n 2 43 GLN n 2 44 ILE n 2 45 ARG n 2 46 PHE n 2 47 ARG n 2 48 PHE n 2 49 ASP n 2 50 GLY n 2 51 GLN n 2 52 PRO n 2 53 ILE n 2 54 ASN n 2 55 GLU n 2 56 THR n 2 57 ASP n 2 58 THR n 2 59 PRO n 2 60 ALA n 2 61 GLN n 2 62 LEU n 2 63 GLU n 2 64 MET n 2 65 GLU n 2 66 ASP n 2 67 GLU n 2 68 ASP n 2 69 THR n 2 70 ILE n 2 71 ASP n 2 72 VAL n 2 73 PHE n 2 74 GLN n 2 75 GLN n 2 76 GLN n 2 77 THR n 2 78 GLY n 2 79 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? 'PET DERIVED' ? ? ? ? ? 2 1 sample ? ? ? HUMAN ? ? ? ? ? ? ? ? 'HOMO SAPIENS' 9606 ? ? ? ? ? ? ? ? 'ESCHERICHIA COLI' 469008 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? ? 'PET DERIVED' ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP SENP1_HUMAN 1 ? ? Q9P0U3 ? 2 UNP SUMO2_HUMAN 2 ? ? P61956 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2CKH A 1 ? 225 ? Q9P0U3 419 ? 643 ? 419 643 2 2 2CKH B 1 ? 79 ? P61956 15 ? 93 ? 14 92 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CKH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 6.06 _exptl_crystal.density_percent_sol 79.54 _exptl_crystal.description ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.00 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 5.00' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-1' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-1 _diffrn_source.pdbx_wavelength 0.933 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 2CKH _reflns.observed_criterion_sigma_I 0.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 120.000 _reflns.d_resolution_high 3.200 _reflns.number_obs 13469 _reflns.number_all ? _reflns.percent_possible_obs 100.0 _reflns.pdbx_Rmerge_I_obs 0.08800 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 19.6000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.300 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.30 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.436000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.300 _reflns_shell.pdbx_redundancy 8.50 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 2CKH _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.ls_number_reflns_obs 13469 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 124.03 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 99.0 _refine.ls_R_factor_obs 0.249 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.245 _refine.ls_R_factor_R_free 0.294 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 716 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.937 _refine.correlation_coeff_Fo_to_Fc_free 0.912 _refine.B_iso_mean 129.72 _refine.aniso_B[1][1] -11.71000 _refine.aniso_B[2][2] -11.71000 _refine.aniso_B[3][3] 17.56000 _refine.aniso_B[1][2] -5.85000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. ANY DISCREPANCY BETWEEN R-FACTORS CALCULATED BY SFCHECK AND/OR EDS MAY BE DUE TO THE USE OF TLS IN THE REFIMNEMENT OF THE STRUCTURE AS INDICATED ABOVE. ; _refine.pdbx_starting_model 'PDB ENTRY 1TGZ' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.689 _refine.pdbx_overall_ESU_R_Free 0.415 _refine.overall_SU_ML 0.439 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 62.802 _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2515 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2515 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 124.03 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.010 0.022 ? 2568 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.256 1.942 ? 3450 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.115 5.000 ? 302 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 39.728 24.478 ? 134 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 20.946 15.000 ? 493 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.025 15.000 ? 17 'X-RAY DIFFRACTION' ? r_chiral_restr 0.095 0.200 ? 367 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.003 0.020 ? 1936 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.243 0.200 ? 1337 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.312 0.200 ? 1741 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.152 0.200 ? 103 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.244 0.200 ? 28 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.048 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.307 1.500 ? 1551 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.542 2.000 ? 2453 'X-RAY DIFFRACTION' ? r_mcangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 0.712 3.000 ? 1145 'X-RAY DIFFRACTION' ? r_scbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_scangle_it 1.122 4.500 ? 997 'X-RAY DIFFRACTION' ? r_scangle_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_long_range_B_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.28 _refine_ls_shell.number_reflns_R_work 1009 _refine_ls_shell.R_factor_R_work 0.3500 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.3870 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 53 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 2CKH _struct.title 'SENP1-SUMO2 complex' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CKH _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'UBL CONJUGATION PATHWAY, NUCLEAR PROTEIN, PROTEASE CO- COMPLEX, SUMO, PROTEASE, HYDROLASE, THIOL PROTEASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 6 ? ARG A 18 ? THR A 424 ARG A 436 1 ? 13 HELX_P HELX_P2 2 THR A 35 ? THR A 41 ? THR A 453 THR A 459 1 ? 7 HELX_P HELX_P3 3 ASP A 50 ? SER A 64 ? ASP A 468 SER A 482 1 ? 15 HELX_P HELX_P4 4 PHE A 78 ? GLY A 87 ? PHE A 496 GLY A 505 1 ? 10 HELX_P HELX_P5 5 GLY A 87 ? LYS A 92 ? GLY A 505 LYS A 510 1 ? 6 HELX_P HELX_P6 6 ASP A 99 ? VAL A 103 ? ASP A 517 VAL A 521 5 ? 5 HELX_P HELX_P7 7 ASN A 138 ? LYS A 157 ? ASN A 556 LYS A 575 1 ? 20 HELX_P HELX_P8 8 ASP A 183 ? LYS A 197 ? ASP A 601 LYS A 615 1 ? 15 HELX_P HELX_P9 9 GLN A 206 ? ARG A 222 ? GLN A 624 ARG A 640 1 ? 17 HELX_P HELX_P10 10 LEU B 26 ? ARG B 36 ? LEU B 39 ARG B 49 1 ? 11 HELX_P HELX_P11 11 THR B 58 ? GLU B 63 ? THR B 71 GLU B 76 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 92 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 510 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ARG _struct_mon_prot_cis.pdbx_label_seq_id_2 93 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ARG _struct_mon_prot_cis.pdbx_auth_seq_id_2 511 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 7.54 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 2 ? AB ? 5 ? BA ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AB 1 2 ? parallel AB 2 3 ? anti-parallel AB 3 4 ? anti-parallel AB 4 5 ? parallel BA 1 2 ? anti-parallel BA 2 3 ? parallel BA 3 4 ? anti-parallel BA 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 LEU A 48 ? ASN A 49 ? LEU A 466 ASN A 467 AA 2 THR B 77 ? GLY B 78 ? THR B 90 GLY B 91 AB 1 VAL A 72 ? ALA A 74 ? VAL A 490 ALA A 492 AB 2 ILE A 105 ? HIS A 111 ? ILE A 523 HIS A 529 AB 3 TRP A 116 ? ASP A 122 ? TRP A 534 ASP A 540 AB 4 ASN A 127 ? TYR A 131 ? ASN A 545 TYR A 549 AB 5 GLN A 167 ? SER A 170 ? GLN A 585 SER A 588 BA 1 SER B 14 ? LYS B 21 ? SER B 27 LYS B 34 BA 2 HIS B 3 ? GLY B 10 ? HIS B 16 GLY B 23 BA 3 ASP B 68 ? GLN B 74 ? ASP B 81 GLN B 87 BA 4 ILE B 44 ? PHE B 48 ? ILE B 57 PHE B 61 BA 5 GLN B 51 ? PRO B 52 ? GLN B 64 PRO B 65 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 48 ? N LEU A 466 O GLY B 78 ? O GLY B 91 AB 1 2 N HIS A 73 ? N HIS A 491 O ILE A 105 ? O ILE A 523 AB 2 3 N ILE A 110 ? N ILE A 528 O CYS A 117 ? O CYS A 535 AB 3 4 N ASP A 122 ? N ASP A 540 O ASN A 127 ? O ASN A 545 AB 4 5 N ILE A 128 ? N ILE A 546 O GLN A 167 ? O GLN A 585 BA 1 2 N ILE B 20 ? N ILE B 33 O ILE B 4 ? O ILE B 17 BA 2 3 N LYS B 7 ? N LYS B 20 O ASP B 68 ? O ASP B 81 BA 3 4 N PHE B 73 ? N PHE B 86 O ARG B 45 ? O ARG B 58 BA 4 5 N PHE B 48 ? N PHE B 61 O GLN B 51 ? O GLN B 64 # _database_PDB_matrix.entry_id 2CKH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CKH _atom_sites.fract_transf_matrix[1][1] 0.006975 _atom_sites.fract_transf_matrix[1][2] 0.004027 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008054 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013911 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 419 419 GLU GLU A . n A 1 2 PHE 2 420 420 PHE PHE A . n A 1 3 PRO 3 421 421 PRO PRO A . n A 1 4 GLU 4 422 422 GLU GLU A . n A 1 5 ILE 5 423 423 ILE ILE A . n A 1 6 THR 6 424 424 THR THR A . n A 1 7 GLU 7 425 425 GLU GLU A . n A 1 8 GLU 8 426 426 GLU GLU A . n A 1 9 MET 9 427 427 MET MET A . n A 1 10 GLU 10 428 428 GLU GLU A . n A 1 11 LYS 11 429 429 LYS LYS A . n A 1 12 GLU 12 430 430 GLU GLU A . n A 1 13 ILE 13 431 431 ILE ILE A . n A 1 14 LYS 14 432 432 LYS LYS A . n A 1 15 ASN 15 433 433 ASN ASN A . n A 1 16 VAL 16 434 434 VAL VAL A . n A 1 17 PHE 17 435 435 PHE PHE A . n A 1 18 ARG 18 436 436 ARG ARG A . n A 1 19 ASN 19 437 437 ASN ASN A . n A 1 20 GLY 20 438 438 GLY GLY A . n A 1 21 ASN 21 439 439 ASN ASN A . n A 1 22 GLN 22 440 440 GLN GLN A . n A 1 23 ASP 23 441 441 ASP ASP A . n A 1 24 GLU 24 442 442 GLU GLU A . n A 1 25 VAL 25 443 443 VAL VAL A . n A 1 26 LEU 26 444 444 LEU LEU A . n A 1 27 SER 27 445 445 SER SER A . n A 1 28 GLU 28 446 446 GLU GLU A . n A 1 29 ALA 29 447 447 ALA ALA A . n A 1 30 PHE 30 448 448 PHE PHE A . n A 1 31 ARG 31 449 449 ARG ARG A . n A 1 32 LEU 32 450 450 LEU LEU A . n A 1 33 THR 33 451 451 THR THR A . n A 1 34 ILE 34 452 452 ILE ILE A . n A 1 35 THR 35 453 453 THR THR A . n A 1 36 ARG 36 454 454 ARG ARG A . n A 1 37 LYS 37 455 455 LYS LYS A . n A 1 38 ASP 38 456 456 ASP ASP A . n A 1 39 ILE 39 457 457 ILE ILE A . n A 1 40 GLN 40 458 458 GLN GLN A . n A 1 41 THR 41 459 459 THR THR A . n A 1 42 LEU 42 460 460 LEU LEU A . n A 1 43 ASN 43 461 461 ASN ASN A . n A 1 44 HIS 44 462 462 HIS HIS A . n A 1 45 LEU 45 463 463 LEU LEU A . n A 1 46 ASN 46 464 464 ASN ASN A . n A 1 47 TRP 47 465 465 TRP TRP A . n A 1 48 LEU 48 466 466 LEU LEU A . n A 1 49 ASN 49 467 467 ASN ASN A . n A 1 50 ASP 50 468 468 ASP ASP A . n A 1 51 GLU 51 469 469 GLU GLU A . n A 1 52 ILE 52 470 470 ILE ILE A . n A 1 53 ILE 53 471 471 ILE ILE A . n A 1 54 ASN 54 472 472 ASN ASN A . n A 1 55 PHE 55 473 473 PHE PHE A . n A 1 56 TYR 56 474 474 TYR TYR A . n A 1 57 MET 57 475 475 MET MET A . n A 1 58 ASN 58 476 476 ASN ASN A . n A 1 59 MET 59 477 477 MET MET A . n A 1 60 LEU 60 478 478 LEU LEU A . n A 1 61 MET 61 479 479 MET MET A . n A 1 62 GLU 62 480 480 GLU GLU A . n A 1 63 ARG 63 481 481 ARG ARG A . n A 1 64 SER 64 482 482 SER SER A . n A 1 65 LYS 65 483 483 LYS LYS A . n A 1 66 GLU 66 484 484 GLU GLU A . n A 1 67 LYS 67 485 485 LYS LYS A . n A 1 68 GLY 68 486 486 GLY GLY A . n A 1 69 LEU 69 487 487 LEU LEU A . n A 1 70 PRO 70 488 488 PRO PRO A . n A 1 71 SER 71 489 489 SER SER A . n A 1 72 VAL 72 490 490 VAL VAL A . n A 1 73 HIS 73 491 491 HIS HIS A . n A 1 74 ALA 74 492 492 ALA ALA A . n A 1 75 PHE 75 493 493 PHE PHE A . n A 1 76 ASN 76 494 494 ASN ASN A . n A 1 77 THR 77 495 495 THR THR A . n A 1 78 PHE 78 496 496 PHE PHE A . n A 1 79 PHE 79 497 497 PHE PHE A . n A 1 80 PHE 80 498 498 PHE PHE A . n A 1 81 THR 81 499 499 THR THR A . n A 1 82 LYS 82 500 500 LYS LYS A . n A 1 83 LEU 83 501 501 LEU LEU A . n A 1 84 LYS 84 502 502 LYS LYS A . n A 1 85 THR 85 503 503 THR THR A . n A 1 86 ALA 86 504 504 ALA ALA A . n A 1 87 GLY 87 505 505 GLY GLY A . n A 1 88 TYR 88 506 506 TYR TYR A . n A 1 89 GLN 89 507 507 GLN GLN A . n A 1 90 ALA 90 508 508 ALA ALA A . n A 1 91 VAL 91 509 509 VAL VAL A . n A 1 92 LYS 92 510 510 LYS LYS A . n A 1 93 ARG 93 511 511 ARG ARG A . n A 1 94 TRP 94 512 512 TRP TRP A . n A 1 95 THR 95 513 513 THR THR A . n A 1 96 LYS 96 514 514 LYS LYS A . n A 1 97 LYS 97 515 515 LYS LYS A . n A 1 98 VAL 98 516 516 VAL VAL A . n A 1 99 ASP 99 517 517 ASP ASP A . n A 1 100 VAL 100 518 518 VAL VAL A . n A 1 101 PHE 101 519 519 PHE PHE A . n A 1 102 SER 102 520 520 SER SER A . n A 1 103 VAL 103 521 521 VAL VAL A . n A 1 104 ASP 104 522 522 ASP ASP A . n A 1 105 ILE 105 523 523 ILE ILE A . n A 1 106 LEU 106 524 524 LEU LEU A . n A 1 107 LEU 107 525 525 LEU LEU A . n A 1 108 VAL 108 526 526 VAL VAL A . n A 1 109 PRO 109 527 527 PRO PRO A . n A 1 110 ILE 110 528 528 ILE ILE A . n A 1 111 HIS 111 529 529 HIS HIS A . n A 1 112 LEU 112 530 530 LEU LEU A . n A 1 113 GLY 113 531 531 GLY GLY A . n A 1 114 VAL 114 532 532 VAL VAL A . n A 1 115 HIS 115 533 533 HIS HIS A . n A 1 116 TRP 116 534 534 TRP TRP A . n A 1 117 CYS 117 535 535 CYS CYS A . n A 1 118 LEU 118 536 536 LEU LEU A . n A 1 119 ALA 119 537 537 ALA ALA A . n A 1 120 VAL 120 538 538 VAL VAL A . n A 1 121 VAL 121 539 539 VAL VAL A . n A 1 122 ASP 122 540 540 ASP ASP A . n A 1 123 PHE 123 541 541 PHE PHE A . n A 1 124 ARG 124 542 542 ARG ARG A . n A 1 125 LYS 125 543 543 LYS LYS A . n A 1 126 LYS 126 544 544 LYS LYS A . n A 1 127 ASN 127 545 545 ASN ASN A . n A 1 128 ILE 128 546 546 ILE ILE A . n A 1 129 THR 129 547 547 THR THR A . n A 1 130 TYR 130 548 548 TYR TYR A . n A 1 131 TYR 131 549 549 TYR TYR A . n A 1 132 ASP 132 550 550 ASP ASP A . n A 1 133 SER 133 551 551 SER SER A . n A 1 134 MET 134 552 552 MET MET A . n A 1 135 GLY 135 553 553 GLY GLY A . n A 1 136 GLY 136 554 554 GLY GLY A . n A 1 137 ILE 137 555 555 ILE ILE A . n A 1 138 ASN 138 556 556 ASN ASN A . n A 1 139 ASN 139 557 557 ASN ASN A . n A 1 140 GLU 140 558 558 GLU GLU A . n A 1 141 ALA 141 559 559 ALA ALA A . n A 1 142 CYS 142 560 560 CYS CYS A . n A 1 143 ARG 143 561 561 ARG ARG A . n A 1 144 ILE 144 562 562 ILE ILE A . n A 1 145 LEU 145 563 563 LEU LEU A . n A 1 146 LEU 146 564 564 LEU LEU A . n A 1 147 GLN 147 565 565 GLN GLN A . n A 1 148 TYR 148 566 566 TYR TYR A . n A 1 149 LEU 149 567 567 LEU LEU A . n A 1 150 LYS 150 568 568 LYS LYS A . n A 1 151 GLN 151 569 569 GLN GLN A . n A 1 152 GLU 152 570 570 GLU GLU A . n A 1 153 SER 153 571 571 SER SER A . n A 1 154 ILE 154 572 572 ILE ILE A . n A 1 155 ASP 155 573 573 ASP ASP A . n A 1 156 LYS 156 574 574 LYS LYS A . n A 1 157 LYS 157 575 575 LYS LYS A . n A 1 158 ARG 158 576 576 ARG ARG A . n A 1 159 LYS 159 577 577 LYS LYS A . n A 1 160 GLU 160 578 578 GLU GLU A . n A 1 161 PHE 161 579 579 PHE PHE A . n A 1 162 ASP 162 580 580 ASP ASP A . n A 1 163 THR 163 581 581 THR THR A . n A 1 164 ASN 164 582 582 ASN ASN A . n A 1 165 GLY 165 583 583 GLY GLY A . n A 1 166 TRP 166 584 584 TRP TRP A . n A 1 167 GLN 167 585 585 GLN GLN A . n A 1 168 LEU 168 586 586 LEU LEU A . n A 1 169 PHE 169 587 587 PHE PHE A . n A 1 170 SER 170 588 588 SER SER A . n A 1 171 LYS 171 589 589 LYS LYS A . n A 1 172 LYS 172 590 590 LYS LYS A . n A 1 173 SER 173 591 591 SER SER A . n A 1 174 GLN 174 592 592 GLN GLN A . n A 1 175 ILE 175 593 593 ILE ILE A . n A 1 176 PRO 176 594 594 PRO PRO A . n A 1 177 GLN 177 595 595 GLN GLN A . n A 1 178 GLN 178 596 596 GLN GLN A . n A 1 179 MET 179 597 597 MET MET A . n A 1 180 ASN 180 598 598 ASN ASN A . n A 1 181 GLY 181 599 599 GLY GLY A . n A 1 182 SER 182 600 600 SER SER A . n A 1 183 ASP 183 601 601 ASP ASP A . n A 1 184 CYS 184 602 602 CYS CYS A . n A 1 185 GLY 185 603 603 GLY GLY A . n A 1 186 MET 186 604 604 MET MET A . n A 1 187 PHE 187 605 605 PHE PHE A . n A 1 188 ALA 188 606 606 ALA ALA A . n A 1 189 CYS 189 607 607 CYS CYS A . n A 1 190 LYS 190 608 608 LYS LYS A . n A 1 191 TYR 191 609 609 TYR TYR A . n A 1 192 ALA 192 610 610 ALA ALA A . n A 1 193 ASP 193 611 611 ASP ASP A . n A 1 194 CYS 194 612 612 CYS CYS A . n A 1 195 ILE 195 613 613 ILE ILE A . n A 1 196 THR 196 614 614 THR THR A . n A 1 197 LYS 197 615 615 LYS LYS A . n A 1 198 ASP 198 616 616 ASP ASP A . n A 1 199 ARG 199 617 617 ARG ARG A . n A 1 200 PRO 200 618 618 PRO PRO A . n A 1 201 ILE 201 619 619 ILE ILE A . n A 1 202 ASN 202 620 620 ASN ASN A . n A 1 203 PHE 203 621 621 PHE PHE A . n A 1 204 THR 204 622 622 THR THR A . n A 1 205 GLN 205 623 623 GLN GLN A . n A 1 206 GLN 206 624 624 GLN GLN A . n A 1 207 HIS 207 625 625 HIS HIS A . n A 1 208 MET 208 626 626 MET MET A . n A 1 209 PRO 209 627 627 PRO PRO A . n A 1 210 TYR 210 628 628 TYR TYR A . n A 1 211 PHE 211 629 629 PHE PHE A . n A 1 212 ARG 212 630 630 ARG ARG A . n A 1 213 LYS 213 631 631 LYS LYS A . n A 1 214 ARG 214 632 632 ARG ARG A . n A 1 215 MET 215 633 633 MET MET A . n A 1 216 VAL 216 634 634 VAL VAL A . n A 1 217 TRP 217 635 635 TRP TRP A . n A 1 218 GLU 218 636 636 GLU GLU A . n A 1 219 ILE 219 637 637 ILE ILE A . n A 1 220 LEU 220 638 638 LEU LEU A . n A 1 221 HIS 221 639 639 HIS HIS A . n A 1 222 ARG 222 640 640 ARG ARG A . n A 1 223 LYS 223 641 641 LYS LYS A . n A 1 224 LEU 224 642 642 LEU LEU A . n A 1 225 LEU 225 643 643 LEU LEU A . n B 2 1 ASN 1 14 14 ASN ASN B . n B 2 2 ASP 2 15 15 ASP ASP B . n B 2 3 HIS 3 16 16 HIS HIS B . n B 2 4 ILE 4 17 17 ILE ILE B . n B 2 5 ASN 5 18 18 ASN ASN B . n B 2 6 LEU 6 19 19 LEU LEU B . n B 2 7 LYS 7 20 20 LYS LYS B . n B 2 8 VAL 8 21 21 VAL VAL B . n B 2 9 ALA 9 22 22 ALA ALA B . n B 2 10 GLY 10 23 23 GLY GLY B . n B 2 11 GLN 11 24 24 GLN GLN B . n B 2 12 ASP 12 25 25 ASP ASP B . n B 2 13 GLY 13 26 26 GLY GLY B . n B 2 14 SER 14 27 27 SER SER B . n B 2 15 VAL 15 28 28 VAL VAL B . n B 2 16 VAL 16 29 29 VAL VAL B . n B 2 17 GLN 17 30 30 GLN GLN B . n B 2 18 PHE 18 31 31 PHE PHE B . n B 2 19 LYS 19 32 32 LYS LYS B . n B 2 20 ILE 20 33 33 ILE ILE B . n B 2 21 LYS 21 34 34 LYS LYS B . n B 2 22 ARG 22 35 35 ARG ARG B . n B 2 23 HIS 23 36 36 HIS HIS B . n B 2 24 THR 24 37 37 THR THR B . n B 2 25 PRO 25 38 38 PRO PRO B . n B 2 26 LEU 26 39 39 LEU LEU B . n B 2 27 SER 27 40 40 SER SER B . n B 2 28 LYS 28 41 41 LYS LYS B . n B 2 29 LEU 29 42 42 LEU LEU B . n B 2 30 MET 30 43 43 MET MET B . n B 2 31 LYS 31 44 44 LYS LYS B . n B 2 32 ALA 32 45 45 ALA ALA B . n B 2 33 TYR 33 46 46 TYR TYR B . n B 2 34 CYS 34 47 47 CYS CYS B . n B 2 35 GLU 35 48 48 GLU GLU B . n B 2 36 ARG 36 49 49 ARG ARG B . n B 2 37 GLN 37 50 50 GLN GLN B . n B 2 38 GLY 38 51 51 GLY GLY B . n B 2 39 LEU 39 52 52 LEU LEU B . n B 2 40 SER 40 53 53 SER SER B . n B 2 41 MET 41 54 54 MET MET B . n B 2 42 ARG 42 55 55 ARG ARG B . n B 2 43 GLN 43 56 56 GLN GLN B . n B 2 44 ILE 44 57 57 ILE ILE B . n B 2 45 ARG 45 58 58 ARG ARG B . n B 2 46 PHE 46 59 59 PHE PHE B . n B 2 47 ARG 47 60 60 ARG ARG B . n B 2 48 PHE 48 61 61 PHE PHE B . n B 2 49 ASP 49 62 62 ASP ASP B . n B 2 50 GLY 50 63 63 GLY GLY B . n B 2 51 GLN 51 64 64 GLN GLN B . n B 2 52 PRO 52 65 65 PRO PRO B . n B 2 53 ILE 53 66 66 ILE ILE B . n B 2 54 ASN 54 67 67 ASN ASN B . n B 2 55 GLU 55 68 68 GLU GLU B . n B 2 56 THR 56 69 69 THR THR B . n B 2 57 ASP 57 70 70 ASP ASP B . n B 2 58 THR 58 71 71 THR THR B . n B 2 59 PRO 59 72 72 PRO PRO B . n B 2 60 ALA 60 73 73 ALA ALA B . n B 2 61 GLN 61 74 74 GLN GLN B . n B 2 62 LEU 62 75 75 LEU LEU B . n B 2 63 GLU 63 76 76 GLU GLU B . n B 2 64 MET 64 77 77 MET MET B . n B 2 65 GLU 65 78 78 GLU GLU B . n B 2 66 ASP 66 79 79 ASP ASP B . n B 2 67 GLU 67 80 80 GLU GLU B . n B 2 68 ASP 68 81 81 ASP ASP B . n B 2 69 THR 69 82 82 THR THR B . n B 2 70 ILE 70 83 83 ILE ILE B . n B 2 71 ASP 71 84 84 ASP ASP B . n B 2 72 VAL 72 85 85 VAL VAL B . n B 2 73 PHE 73 86 86 PHE PHE B . n B 2 74 GLN 74 87 87 GLN GLN B . n B 2 75 GLN 75 88 88 GLN GLN B . n B 2 76 GLN 76 89 89 GLN GLN B . n B 2 77 THR 77 90 90 THR THR B . n B 2 78 GLY 78 91 91 GLY GLY B . n B 2 79 GLY 79 92 92 GLY GLY B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-04-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-08-30 4 'Structure model' 1 3 2023-12-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Refinement description' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' diffrn_detector 2 3 'Structure model' diffrn_source 3 3 'Structure model' refine 4 3 'Structure model' reflns 5 3 'Structure model' reflns_shell 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 9 4 'Structure model' diffrn_radiation_wavelength 10 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_detector.type' 2 3 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 3 3 'Structure model' '_diffrn_source.pdbx_wavelength' 4 3 'Structure model' '_diffrn_source.type' 5 3 'Structure model' '_refine.ls_R_factor_obs' 6 3 'Structure model' '_refine.pdbx_starting_model' 7 3 'Structure model' '_reflns.pdbx_Rmerge_I_obs' 8 3 'Structure model' '_reflns_shell.Rmerge_I_obs' 9 4 'Structure model' '_database_2.pdbx_DOI' 10 4 'Structure model' '_database_2.pdbx_database_accession' 11 4 'Structure model' '_diffrn_radiation_wavelength.wavelength' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 67.7792 -16.2614 18.2692 -0.0887 -0.4592 -0.5150 0.1281 0.0975 0.0784 5.4879 7.2814 2.9857 1.1299 -0.3915 -1.4030 -0.3462 -0.6772 -1.0110 0.4878 0.2895 0.7201 0.0954 0.0483 0.0567 'X-RAY DIFFRACTION' 2 ? refined 54.2166 -23.1027 -1.5081 -0.3206 -0.8029 0.1410 -0.2657 -0.1079 -0.0337 5.7130 7.6139 9.9295 -1.2518 4.2776 1.5471 -0.2282 0.3173 -0.6517 -1.2239 0.0350 0.9180 -0.7802 -0.2046 0.1931 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 419 ? ? A 643 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 B 14 ? ? B 92 ? ? ? ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language REFMAC refinement 5.2.0019 ? 1 ? ? ? ? MOSFLM 'data reduction' . ? 2 ? ? ? ? SCALA 'data scaling' . ? 3 ? ? ? ? CCP4 phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 2CKH _pdbx_entry_details.compound_details ;DEGRADES UBL1 AND SMT3H2 CONJUGATES AND RELEASES THE MONOMERS ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 SG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 CYS _pdbx_validate_close_contact.auth_seq_id_1 602 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 GLY _pdbx_validate_close_contact.auth_seq_id_2 92 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.71 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 615 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 NZ _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 615 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.714 _pdbx_validate_rmsd_bond.bond_target_value 1.486 _pdbx_validate_rmsd_bond.bond_deviation 0.228 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.025 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 423 ? ? -100.33 77.87 2 1 ASN A 437 ? ? -54.45 100.99 3 1 LEU A 444 ? ? 57.05 -64.37 4 1 GLU A 446 ? ? -111.89 -143.69 5 1 ALA A 447 ? ? 50.22 148.25 6 1 PHE A 448 ? ? 85.54 10.87 7 1 ARG A 449 ? ? 56.98 18.25 8 1 HIS A 462 ? ? 45.82 -102.21 9 1 SER A 482 ? ? -61.66 72.24 10 1 LYS A 483 ? ? -170.38 -25.01 11 1 LYS A 510 ? ? -15.83 -77.83 12 1 ARG A 511 ? ? 133.79 -60.95 13 1 SER A 520 ? ? -73.49 20.97 14 1 HIS A 533 ? ? -174.73 134.06 15 1 LYS A 574 ? ? -101.90 -62.33 16 1 ARG A 576 ? ? 25.34 47.69 17 1 LYS A 590 ? ? -121.32 -112.84 18 1 ASN A 598 ? ? -156.84 -146.05 19 1 ASP A 616 ? ? 47.24 -8.29 20 1 ASN A 620 ? ? -155.69 -27.32 21 1 GLN A 623 ? ? 45.57 -83.97 22 1 ARG A 640 ? ? 31.26 103.48 23 1 LYS A 641 ? ? 167.81 128.86 24 1 SER B 53 ? ? -67.40 -84.36 25 1 MET B 54 ? ? 124.28 -48.87 26 1 ARG B 55 ? ? -93.44 33.24 27 1 GLN B 89 ? ? 65.80 123.75 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1TGZ _pdbx_initial_refinement_model.details 'PDB ENTRY 1TGZ' #