HEADER HYDROLASE 19-MAY-06 2CNC TITLE FAMILY 10 XYLANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOXYLANASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FAMILY 10 XYLANASE; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CELLVIBRIO MIXTUS; SOURCE 3 ORGANISM_TAXID: 39650; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: TUNER; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22 KEYWDS DECORATED SUGAR, XYLAN DEGRADATION, XYLANASE, HYDROLASE, GLYCOSIDASE, KEYWDS 2 THERMOSTABILITY EXPDTA X-RAY DIFFRACTION AUTHOR H.XIE,J.FLINT,M.VARDAKOU,J.H.LAKEY,R.J.LEWIS,H.J.GILBERT,C.DUMON REVDAT 5 13-DEC-23 2CNC 1 REMARK HETSYN LINK REVDAT 4 29-JUL-20 2CNC 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 24-FEB-09 2CNC 1 VERSN REVDAT 2 05-JUL-06 2CNC 1 JRNL REVDAT 1 14-JUN-06 2CNC 0 JRNL AUTH H.XIE,J.FLINT,M.VARDAKOU,J.H.LAKEY,R.J.LEWIS,H.J.GILBERT, JRNL AUTH 2 C.DUMON JRNL TITL PROBING THE STRUCTURAL BASIS FOR THE DIFFERENCE IN JRNL TITL 2 THERMOSTABILITY DISPLAYED BY FAMILY 10 XYLANASES. JRNL REF J.MOL.BIOL. V. 360 157 2006 JRNL REFN ISSN 0022-2836 JRNL PMID 16762367 JRNL DOI 10.1016/J.JMB.2006.05.002 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 10847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 588 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 732 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1740 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2833 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.383 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.211 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.851 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2963 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4011 ; 2.157 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 357 ; 8.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 143 ;33.445 ;23.916 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 518 ;18.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.224 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 432 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2240 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1634 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1967 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 275 ; 0.229 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 78 ; 0.301 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.343 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 0.994 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2830 ; 1.593 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1324 ; 2.667 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1179 ; 3.959 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1290028572. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : CU REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11465 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 38.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.0 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UR1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.35 M MGCL2, 0.1 M TRIS, PH 6.5, 30% REMARK 280 PEG 4000, 5% PEG 400, PH 6.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.45200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.57800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.68250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.57800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.45200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.68250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ALA 334 TO VAL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 GLN A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 SER A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ILE A 16 REMARK 465 ALA A 17 REMARK 465 MET A 18 REMARK 465 GLY A 19 REMARK 465 GLN A 20 REMARK 465 ALA A 21 REMARK 465 SER A 22 REMARK 465 LYS A 23 REMARK 465 LEU A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ALA A 27 REMARK 465 THR A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 ALA A 31 REMARK 465 GLU A 32 REMARK 465 GLN A 33 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASP A 176 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2115 O HOH A 2117 1.57 REMARK 500 O HOH A 2044 O HOH A 2117 1.90 REMARK 500 O HOH A 2153 O HOH A 2295 1.99 REMARK 500 O HOH A 2001 O HOH A 2295 2.10 REMARK 500 OE1 GLU A 144 O HOH A 2132 2.14 REMARK 500 O HOH A 2066 O HOH A 2295 2.15 REMARK 500 O HOH A 2188 O HOH A 2225 2.15 REMARK 500 O HOH A 2125 O HOH A 2126 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 176 CB ASP A 176 CG -0.413 REMARK 500 ASP A 176 CG ASP A 176 OD1 2.047 REMARK 500 ASP A 176 CG ASP A 176 OD1 2.616 REMARK 500 ASP A 176 CG ASP A 176 OD2 3.368 REMARK 500 ASP A 176 CG ASP A 176 OD2 2.118 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 42 CB - CG - OD1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 176 CA - CB - CG ANGL. DEV. = 24.2 DEGREES REMARK 500 ASP A 176 CA - CB - CG ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP A 176 OD1 - CG - OD2 ANGL. DEV. = 102.6 DEGREES REMARK 500 ASP A 176 OD1 - CG - OD2 ANGL. DEV. = -89.0 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = -80.9 DEGREES REMARK 500 ASP A 176 CB - CG - OD1 ANGL. DEV. = 111.5 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = -92.4 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = -78.7 DEGREES REMARK 500 ASP A 186 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 186 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 PRO A 367 C - N - CA ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 81 -65.48 -28.04 REMARK 500 LYS A 155 111.63 -32.25 REMARK 500 ASP A 162 96.22 -67.44 REMARK 500 GLU A 166 65.28 60.25 REMARK 500 ASP A 176 48.29 -78.12 REMARK 500 ASN A 210 11.60 58.77 REMARK 500 HIS A 242 93.86 -69.92 REMARK 500 ALA A 286 27.67 -61.08 REMARK 500 GLU A 287 28.05 -160.10 REMARK 500 SER A 289 93.85 -170.38 REMARK 500 THR A 290 -61.22 -14.96 REMARK 500 ASP A 299 67.34 -118.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TRP A 161 ASP A 162 149.82 REMARK 500 SER A 289 THR A 290 46.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ASP A 176 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1389 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2081 O REMARK 620 2 HOH A2144 O 98.0 REMARK 620 3 HOH A2147 O 85.9 94.1 REMARK 620 N 1 2 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 10-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 11-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UQY RELATED DB: PDB REMARK 900 XYLANASE XYN10B MUTANT (E262S) FROM CELLVIBRIO MIXTUS IN COMPLEX REMARK 900 WITH XYLOPENTAOSE REMARK 900 RELATED ID: 1UQZ RELATED DB: PDB REMARK 900 XYLANASE XYN10B MUTANT (E262S) FROM CELLVIBRIO MIXTUS IN COMPLEX REMARK 900 WITH XYLOPENTAOSE REMARK 900 RELATED ID: 1UR1 RELATED DB: PDB REMARK 900 XYLANASE XYN10B MUTANT (E262S) FROM CELLVIBRIO MIXTUS IN COMPLEX REMARK 900 WITH ARABINOFURANOSE ALPHA -1,3 LINKED TO XYLOBIOSE REMARK 900 RELATED ID: 1UR2 RELATED DB: PDB REMARK 900 XYLANASE XYN10B MUTANT (E262S) FROM CELLVIBRIO MIXTUS IN COMPLEX REMARK 900 WITH ARABINOFURANOSE ALPHA 1,3 LINKED TO XYLOTRIOSE REMARK 999 REMARK 999 SEQUENCE REMARK 999 ENGINEERED MUTATIONS A325V DBREF 2CNC A 1 379 UNP O68541 O68541_9GAMM 1 379 DBREF 2CNC A 380 386 PDB 2CNC 2CNC 380 386 SEQADV 2CNC SER A 271 UNP O68541 GLU 271 CONFLICT SEQADV 2CNC VAL A 334 UNP O68541 ALA 334 ENGINEERED MUTATION SEQADV 2CNC ASP A 348 UNP O68541 GLY 348 CONFLICT SEQADV 2CNC SER A 350 UNP O68541 PRO 350 CONFLICT SEQRES 1 A 386 MET ASN LEU SER ARG ARG GLN LEU LEU ALA LEU THR SER SEQRES 2 A 386 ALA GLY ILE ALA MET GLY GLN ALA SER LYS LEU ALA ALA SEQRES 3 A 386 ALA THR LYS ALA ALA GLU GLN THR GLY LEU LYS SER ALA SEQRES 4 A 386 TYR LYS ASP ASN PHE LEU ILE GLY ALA ALA LEU ASN ALA SEQRES 5 A 386 THR ILE ALA SER GLY ALA ASP GLU ARG LEU ASN THR LEU SEQRES 6 A 386 ILE ALA LYS GLU PHE ASN SER ILE THR PRO GLU ASN CYS SEQRES 7 A 386 MET LYS TRP GLY VAL LEU ARG ASP ALA GLN GLY GLN TRP SEQRES 8 A 386 ASN TRP LYS ASP ALA ASP ALA PHE VAL ALA PHE GLY THR SEQRES 9 A 386 LYS HIS ASN LEU HIS MET VAL GLY HIS THR LEU VAL TRP SEQRES 10 A 386 HIS SER GLN ILE HIS ASP GLU VAL PHE LYS ASN ALA ASP SEQRES 11 A 386 GLY SER TYR ILE SER LYS ALA ALA LEU GLN LYS LYS MET SEQRES 12 A 386 GLU GLU HIS ILE THR THR LEU ALA GLY ARG TYR LYS GLY SEQRES 13 A 386 LYS LEU ALA ALA TRP ASP VAL VAL ASN GLU ALA VAL GLY SEQRES 14 A 386 ASP ASP LEU LYS MET ARG ASP SER HIS TRP TYR LYS ILE SEQRES 15 A 386 MET GLY ASP ASP PHE ILE TYR ASN ALA PHE THR LEU ALA SEQRES 16 A 386 ASN GLU VAL ASP PRO LYS ALA HIS LEU MET TYR ASN ASP SEQRES 17 A 386 TYR ASN ILE GLU ARG THR GLY LYS ARG GLU ALA THR VAL SEQRES 18 A 386 GLU MET ILE GLU ARG LEU GLN LYS ARG GLY MET PRO ILE SEQRES 19 A 386 HIS GLY LEU GLY ILE GLN GLY HIS LEU GLY ILE ASP THR SEQRES 20 A 386 PRO PRO ILE ALA GLU ILE GLU LYS SER ILE ILE ALA PHE SEQRES 21 A 386 ALA LYS LEU GLY LEU ARG VAL HIS PHE THR SER LEU ASP SEQRES 22 A 386 VAL ASP VAL LEU PRO SER VAL TRP GLU LEU PRO VAL ALA SEQRES 23 A 386 GLU VAL SER THR ARG PHE GLU TYR LYS PRO GLU ARG ASP SEQRES 24 A 386 PRO TYR THR LYS GLY LEU PRO GLN GLU MET GLN ASP LYS SEQRES 25 A 386 LEU ALA LYS ARG TYR GLU ASP LEU PHE LYS LEU PHE ILE SEQRES 26 A 386 LYS HIS SER ASP LYS ILE ASP ARG VAL THR PHE TRP GLY SEQRES 27 A 386 VAL SER ASP ASP ALA SER TRP LEU ASN ASP PHE SER ILE SEQRES 28 A 386 PRO GLY ARG THR ASN TYR PRO LEU LEU PHE ASP ARG LYS SEQRES 29 A 386 LEU GLN PRO LYS ASP ALA TYR PHE ARG LEU LEU ASP LEU SEQRES 30 A 386 LYS ARG LEU GLU HIS HIS HIS HIS HIS HET XYS B 1 10 HET XYP B 2 9 HET AHR B 3 9 HET CL A1384 1 HET CL A1385 1 HET MG A1389 1 HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM AHR ALPHA-L-ARABINOFURANOSE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN AHR ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE FORMUL 2 XYS C5 H10 O5 FORMUL 2 XYP C5 H10 O5 FORMUL 2 AHR C5 H10 O5 FORMUL 3 CL 2(CL 1-) FORMUL 5 MG MG 2+ FORMUL 6 HOH *298(H2 O) HELIX 1 1 GLY A 35 TYR A 40 1 6 HELIX 2 2 ASN A 51 SER A 56 1 6 HELIX 3 3 ASP A 59 PHE A 70 1 12 HELIX 4 4 LYS A 80 ARG A 85 1 6 HELIX 5 5 TRP A 93 ASN A 107 1 15 HELIX 6 6 HIS A 122 PHE A 126 5 5 HELIX 7 7 SER A 135 LYS A 155 1 21 HELIX 8 8 SER A 177 GLY A 184 1 8 HELIX 9 9 ASP A 185 ASP A 199 1 15 HELIX 10 10 GLY A 215 LYS A 229 1 15 HELIX 11 11 PRO A 249 LYS A 262 1 14 HELIX 12 12 PRO A 284 VAL A 288 5 5 HELIX 13 13 LYS A 295 ASP A 299 5 5 HELIX 14 14 PRO A 306 HIS A 327 1 22 HELIX 15 15 ASP A 341 ASP A 348 5 8 HELIX 16 16 LYS A 368 LEU A 380 1 13 SHEET 1 AA11 LEU A 45 LEU A 50 0 SHEET 2 AA11 ILE A 331 PHE A 336 1 O ASP A 332 N LEU A 45 SHEET 3 AA11 ARG A 266 ASP A 275 1 O VAL A 267 N ASP A 332 SHEET 4 AA11 GLY A 236 ILE A 239 1 O LEU A 237 N HIS A 268 SHEET 5 AA11 HIS A 203 ASP A 208 1 O TYR A 206 N GLY A 238 SHEET 6 AA11 ALA A 160 ASN A 165 1 O TRP A 161 N MET A 205 SHEET 7 AA11 HIS A 109 VAL A 116 1 O GLY A 112 N ASP A 162 SHEET 8 AA11 SER A 72 PRO A 75 1 O ILE A 73 N VAL A 111 SHEET 9 AA11 LEU A 45 LEU A 50 1 O ALA A 48 N THR A 74 SHEET 10 AA11 ILE A 331 PHE A 336 1 O ASP A 332 N LEU A 45 SHEET 11 AA11 LEU A 45 LEU A 50 1 O LEU A 45 N VAL A 334 LINK O4 XYS B 1 C1 XYP B 2 1555 1555 1.63 LINK O3 XYP B 2 C1 AHR B 3 1555 1555 1.34 LINK MG MG A1389 O HOH A2081 1555 1555 2.10 LINK MG MG A1389 O HOH A2144 1555 1555 2.67 LINK MG MG A1389 O HOH A2147 1555 1555 1.99 CISPEP 1 HIS A 113 THR A 114 0 -7.96 CISPEP 2 THR A 247 PRO A 248 0 4.97 CISPEP 3 PHE A 349 SER A 350 0 5.82 CRYST1 46.904 67.365 105.156 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021320 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009510 0.00000