HEADER FIBRIL PROTEIN 25-MAY-06 2CO7 TITLE SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH THE SAFB CHAPERONE TITLE 2 (TYPE II) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAFA PILUS SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CORE PILIN DOMAIN, NTE DELETED, RESIDUES 46-170; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PUTATIVE FIMBRIAE ASSEMBLY CHAPERONE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: SAFB CHAPERONE; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRC99A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 11 ORGANISM_TAXID: 99287; SOURCE 12 STRAIN: LT2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: C600; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS PILUS SUBUNIT, CHAPERONE, ADHESION, STRAND COMPLEMENTATION, KEYWDS 2 PATHOGENESIS, FIBRIL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.REMAUT,R.J.ROSE,T.J.HANNAN,S.J.HULTGREN,S.E.RADFORD,A.E.ASHCROFT, AUTHOR 2 G.WAKSMAN REVDAT 5 13-DEC-23 2CO7 1 REMARK REVDAT 4 09-OCT-19 2CO7 1 REMARK REVDAT 3 13-JUL-11 2CO7 1 VERSN REVDAT 2 24-FEB-09 2CO7 1 VERSN REVDAT 1 27-JUN-06 2CO7 0 JRNL AUTH H.REMAUT,R.J.ROSE,T.J.HANNAN,S.J.HULTGREN,S.E.RADFORD, JRNL AUTH 2 A.E.ASHCROFT,G.WAKSMAN JRNL TITL DONOR-STRAND EXCHANGE IN CHAPERONE-ASSISTED PILUS ASSEMBLY JRNL TITL 2 PROCEEDS THROUGH A CONCERTED BETA-STRAND DISPLACEMENT JRNL TITL 3 MECHANISM JRNL REF MOL.CELL V. 22 831 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16793551 JRNL DOI 10.1016/J.MOLCEL.2006.05.033 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 89.7 REMARK 3 NUMBER OF REFLECTIONS : 26305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1379 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1877 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2360 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 18.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.138 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2455 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3359 ; 1.533 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 6.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;31.528 ;24.742 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;15.636 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.949 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 395 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1830 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1129 ; 0.224 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1634 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 37 ; 0.255 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 32 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1602 ; 0.864 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2545 ; 1.383 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 973 ; 2.179 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 807 ; 3.410 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 8 B 133 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5868 8.8690 2.1728 REMARK 3 T TENSOR REMARK 3 T11: -0.1395 T22: -0.1422 REMARK 3 T33: -0.1219 T12: -0.0090 REMARK 3 T13: 0.0107 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 1.0038 L22: 2.0122 REMARK 3 L33: 0.4210 L12: 0.2293 REMARK 3 L13: 0.0310 L23: -0.0250 REMARK 3 S TENSOR REMARK 3 S11: 0.0070 S12: 0.0333 S13: 0.0438 REMARK 3 S21: -0.0448 S22: -0.0094 S23: -0.1482 REMARK 3 S31: -0.0582 S32: 0.0456 S33: 0.0025 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 138 B 221 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3459 -10.2390 13.6336 REMARK 3 T TENSOR REMARK 3 T11: -0.0738 T22: -0.0503 REMARK 3 T33: -0.0739 T12: -0.0033 REMARK 3 T13: 0.0193 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 2.2607 L22: 2.8373 REMARK 3 L33: 1.9774 L12: 0.0073 REMARK 3 L13: -0.7759 L23: -0.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0247 S12: -0.5054 S13: -0.0303 REMARK 3 S21: 0.4653 S22: 0.0694 S23: 0.2115 REMARK 3 S31: 0.0582 S32: -0.0388 S33: -0.0942 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 57.1466 8.0691 22.1285 REMARK 3 T TENSOR REMARK 3 T11: -0.0167 T22: 0.0855 REMARK 3 T33: -0.1047 T12: -0.0344 REMARK 3 T13: -0.0117 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2410 L22: 1.8577 REMARK 3 L33: 3.5230 L12: 0.1147 REMARK 3 L13: 0.7007 L23: 0.4972 REMARK 3 S TENSOR REMARK 3 S11: -0.0512 S12: -0.2755 S13: 0.1237 REMARK 3 S21: 0.2439 S22: 0.0133 S23: -0.1658 REMARK 3 S31: -0.0849 S32: 0.5278 S33: 0.0380 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2CO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-06. REMARK 100 THE DEPOSITION ID IS D_1290028897. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.28000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1L4I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4000, 200 MM AMMONIUM ACETATE, REMARK 280 10% PEG 1000, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.19400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.29750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.19400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.29750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FOR THE HETERO-ASSEMBLY DESCRIBED BY REMARK REMARK 300 350THE N-TERMINAL EXTENSION PEPTIDE OF ONE REMARK 300 SUBUNIT, CHAIN B,INSERTS INTO THE FOLD OF REMARK 300 ANOTHER, CHAIN A. THIS INTERACTIONIS REPETED IN REMARK 300 THE POLYMER, AN N-TERMINAL EXTENSION OFMOLECULE C REMARK 300 WOULD INSERT IN TO THE SUBUNIT OF MOLECULE B REMARK 300 , DINTO C ETC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B2055 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2066 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 SER A 31 REMARK 465 GLY A 32 REMARK 465 LEU A 33 REMARK 465 LYS A 34 REMARK 465 ALA A 35 REMARK 465 GLY A 36 REMARK 465 LYS A 79 REMARK 465 ASN A 80 REMARK 465 THR A 81 REMARK 465 GLY A 82 REMARK 465 LYS A 83 REMARK 465 GLU A 84 REMARK 465 VAL A 128 REMARK 465 VAL B 1 REMARK 465 ASN B 2 REMARK 465 GLN B 3 REMARK 465 GLN B 4 REMARK 465 LEU B 5 REMARK 465 ASN B 6 REMARK 465 SER B 7 REMARK 465 ASN B 104 REMARK 465 GLU B 105 REMARK 465 PRO B 106 REMARK 465 SER B 107 REMARK 465 ASP B 108 REMARK 465 THR B 109 REMARK 465 GLN B 110 REMARK 465 ALA B 111 REMARK 465 LYS B 112 REMARK 465 GLY B 113 REMARK 465 ALA B 114 REMARK 465 MET B 193 REMARK 465 PRO B 194 REMARK 465 GLY B 195 REMARK 465 SER B 196 REMARK 465 ALA B 197 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 220 CD2 REMARK 470 LYS B 221 CA C O CB CG CD CE REMARK 470 LYS B 221 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG LEU B 220 N LYS B 221 1.55 REMARK 500 O ASP A 115 O HOH A 2040 1.80 REMARK 500 OD1 ASN B 71 O HOH B 2089 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 38 CG ASN A 38 OD1 0.288 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 65 78.41 -119.99 REMARK 500 ASP A 68 166.69 176.27 REMARK 500 ASN A 114 -3.59 73.10 REMARK 500 ALA A 130 103.22 -59.42 REMARK 500 ASN B 39 39.35 -88.87 REMARK 500 SER B 54 -39.48 -137.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2060 DISTANCE = 6.64 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1145 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1221 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CNY RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA REMARK 900 NTE PEPTIDE (I15A MUTANT) REMARK 900 RELATED ID: 2CNZ RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA REMARK 900 NTE PEPTIDE (V13A MUTANT) REMARK 900 RELATED ID: 2CO1 RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA REMARK 900 NTE PEPTIDE (F17A MUTANT) REMARK 900 RELATED ID: 2CO2 RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA REMARK 900 NTE PEPTIDE (F3A MUTANT) REMARK 900 RELATED ID: 2CO3 RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SAFA PILIN, HEAD-TO-TAIL SWAPPED DIMER OF NTD1 REMARK 900 MUTANT REMARK 900 RELATED ID: 2CO4 RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH A 19-RESIDUE SAFA REMARK 900 NTE PEPTIDE REMARK 900 RELATED ID: 2CO6 RELATED DB: PDB REMARK 900 SALMONELLA ENTERICA SAFA PILIN IN COMPLEX WITH THE SAFB CHAPERONE REMARK 900 (TYPE I) REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES IN THE NTD OF CHAIN A WERE DELETED IN THE SAMPLE REMARK 999 USED IN THE EXPERIMENT. DBREF 2CO7 A 18 19 PDB 2CO7 2CO7 18 19 DBREF 2CO7 A 20 144 UNP Q8ZRK4 Q8ZRK4_SALTY 46 170 DBREF 2CO7 B 1 221 UNP Q8ZRK3 Q8ZRK3_SALTY 25 245 SEQRES 1 A 127 GLY SER PRO GLN ASP LEU THR VAL SER LEU ILE PRO VAL SEQRES 2 A 127 SER GLY LEU LYS ALA GLY LYS ASN ALA PRO SER ALA LYS SEQRES 3 A 127 ILE ALA LYS LEU VAL VAL ASN SER THR THR LEU LYS GLU SEQRES 4 A 127 PHE GLY VAL ARG GLY ILE SER ASN ASN VAL VAL ASP SER SEQRES 5 A 127 THR GLY THR ALA TRP ARG VAL ALA GLY LYS ASN THR GLY SEQRES 6 A 127 LYS GLU ILE GLY VAL GLY LEU SER SER ASP SER LEU ARG SEQRES 7 A 127 ARG SER ASP SER THR GLU LYS TRP ASN GLY VAL ASN TRP SEQRES 8 A 127 MET THR PHE ASN SER ASN ASP THR LEU ASP ILE VAL LEU SEQRES 9 A 127 THR GLY PRO ALA GLN ASN VAL THR ALA ASP THR TYR PRO SEQRES 10 A 127 ILE THR LEU ASP VAL VAL GLY TYR GLN PRO SEQRES 1 B 221 VAL ASN GLN GLN LEU ASN SER ALA THR LYS LEU PHE SER SEQRES 2 B 221 VAL LYS LEU GLY ALA THR ARG VAL ILE TYR HIS ALA GLY SEQRES 3 B 221 THR ALA GLY ALA THR LEU SER VAL SER ASN PRO GLN ASN SEQRES 4 B 221 TYR PRO ILE LEU VAL GLN SER SER VAL LYS ALA ALA ASP SEQRES 5 B 221 LYS SER SER PRO ALA PRO PHE LEU VAL MET PRO PRO LEU SEQRES 6 B 221 PHE ARG LEU GLU ALA ASN GLN GLN SER GLN LEU ARG ILE SEQRES 7 B 221 VAL ARG THR GLY GLY ASP MET PRO THR ASP ARG GLU THR SEQRES 8 B 221 LEU GLN TRP VAL CYS ILE LYS ALA VAL PRO PRO GLU ASN SEQRES 9 B 221 GLU PRO SER ASP THR GLN ALA LYS GLY ALA THR LEU ASP SEQRES 10 B 221 LEU ASN LEU SER ILE ASN ALA CYS ASP LYS LEU ILE PHE SEQRES 11 B 221 ARG PRO ASP ALA VAL LYS GLY THR PRO GLU ASP VAL ALA SEQRES 12 B 221 GLY ASN LEU ARG TRP VAL GLU THR GLY ASN LYS LEU LYS SEQRES 13 B 221 VAL GLU ASN PRO THR PRO PHE TYR MET ASN LEU ALA SER SEQRES 14 B 221 VAL THR VAL GLY GLY LYS PRO ILE THR GLY LEU GLU TYR SEQRES 15 B 221 VAL PRO PRO PHE ALA ASP LYS THR LEU ASN MET PRO GLY SEQRES 16 B 221 SER ALA HIS GLY ASP ILE GLU TRP ARG VAL ILE THR ASP SEQRES 17 B 221 PHE GLY GLY GLU SER HIS PRO PHE HIS TYR VAL LEU LYS HET SO4 A1145 5 HET SO4 B1221 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *274(H2 O) HELIX 1 1 SER A 90 ARG A 96 1 7 HELIX 2 2 THR B 138 ALA B 143 1 6 HELIX 3 3 GLY B 144 LEU B 146 5 3 SHEET 1 AA 7 ASN A 65 VAL A 66 0 SHEET 2 AA 7 ALA A 73 ARG A 75 -1 O ARG A 75 N ASN A 65 SHEET 3 AA 7 GLY A 86 LEU A 89 -1 O VAL A 87 N TRP A 74 SHEET 4 AA 7 THR A 116 LEU A 121 -1 O VAL A 120 N GLY A 88 SHEET 5 AA 7 LYS A 43 ASN A 50 -1 N ILE A 44 O ILE A 119 SHEET 6 AA 7 THR A 24 PRO A 29 -1 O THR A 24 N ASN A 50 SHEET 7 AA 7 LYS B 10 SER B 13 -1 O LYS B 10 N LEU A 27 SHEET 1 AB 6 SER A 99 TRP A 103 0 SHEET 2 AB 6 VAL A 106 ASN A 112 -1 O VAL A 106 N TRP A 103 SHEET 3 AB 6 GLU A 56 ILE A 62 -1 O PHE A 57 N PHE A 111 SHEET 4 AB 6 TYR A 133 TYR A 142 -1 O THR A 136 N ILE A 62 SHEET 5 AB 6 LEU B 116 ARG B 131 1 O ASP B 117 N ILE A 135 SHEET 6 AB 6 ARG B 20 HIS B 24 1 O VAL B 21 N ILE B 129 SHEET 1 AC 8 SER A 99 TRP A 103 0 SHEET 2 AC 8 VAL A 106 ASN A 112 -1 O VAL A 106 N TRP A 103 SHEET 3 AC 8 GLU A 56 ILE A 62 -1 O PHE A 57 N PHE A 111 SHEET 4 AC 8 TYR A 133 TYR A 142 -1 O THR A 136 N ILE A 62 SHEET 5 AC 8 LEU B 116 ARG B 131 1 O ASP B 117 N ILE A 135 SHEET 6 AC 8 THR B 91 VAL B 100 -1 O THR B 91 N PHE B 130 SHEET 7 AC 8 ILE B 42 ALA B 50 -1 O LEU B 43 N VAL B 100 SHEET 8 AC 8 LEU B 65 LEU B 68 -1 O PHE B 66 N VAL B 44 SHEET 1 BA 4 LYS B 15 LEU B 16 0 SHEET 2 BA 4 ALA B 30 SER B 35 -1 O SER B 35 N LYS B 15 SHEET 3 BA 4 GLN B 73 ARG B 80 -1 O SER B 74 N VAL B 34 SHEET 4 BA 4 PHE B 59 MET B 62 -1 O LEU B 60 N VAL B 79 SHEET 1 BB 3 ARG B 147 THR B 151 0 SHEET 2 BB 3 LYS B 154 ASN B 159 -1 O LYS B 154 N THR B 151 SHEET 3 BB 3 ALA B 187 LEU B 191 -1 O ALA B 187 N ASN B 159 SHEET 1 BC 4 LYS B 175 PRO B 176 0 SHEET 2 BC 4 LEU B 167 VAL B 172 -1 O VAL B 172 N LYS B 175 SHEET 3 BC 4 ILE B 201 VAL B 205 -1 O GLU B 202 N THR B 171 SHEET 4 BC 4 PHE B 216 TYR B 218 -1 O PHE B 216 N TRP B 203 SSBOND 1 CYS B 96 CYS B 125 1555 1555 2.10 CISPEP 1 MET B 62 PRO B 63 0 -3.66 CISPEP 2 MET B 62 PRO B 63 0 -0.66 SITE 1 AC1 8 PRO A 20 HOH A2002 HOH A2054 HOH A2055 SITE 2 AC1 8 HOH A2056 ARG B 147 LYS B 156 GLU B 158 SITE 1 AC2 9 LYS A 55 PRO A 144 LYS B 127 GLU B 181 SITE 2 AC2 9 TYR B 182 HOH B2215 HOH B2216 HOH B2217 SITE 3 AC2 9 HOH B2218 CRYST1 114.388 40.595 72.039 90.00 95.82 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008742 0.000000 0.000891 0.00000 SCALE2 0.000000 0.024634 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013953 0.00000