HEADER TRANSFERASE 17-MAY-05 2COK TITLE SOLUTION STRUCTURE OF BRCT DOMAIN OF POLY(ADP-RIBOSE) POLYMERASE-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCA1 C-TURMINUS (BRCT) DOMAIN; COMPND 5 SYNONYM: PARP-1, ADPRT, NAD(+) ADP-RIBOSYLTRANSFERASE-1, POLY[ADP- COMPND 6 RIBOSE] SYNTHETASE-1; COMPND 7 EC: 2.4.2.30; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP1, ADPRT, PPOL; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040809-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS BRCT DOMAIN, DNA REPAIR, POLY (ADP-RIBOSE) POLYMERASE-1, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 10-NOV-21 2COK 1 REMARK SEQADV REVDAT 2 24-FEB-09 2COK 1 VERSN REVDAT 1 17-NOV-05 2COK 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF BRCT DOMAIN OF POLY(ADP-RIBOSE) JRNL TITL 2 POLYMERASE-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 1.0.7 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2COK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024452. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.19MM BRCT DOMAIN U-13C,15N; REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 1.0.7 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 79 H VAL A 83 1.50 REMARK 500 O LEU A 17 H ILE A 51 1.52 REMARK 500 O LYS A 15 H SER A 48 1.52 REMARK 500 O LYS A 26 H LYS A 30 1.53 REMARK 500 O VAL A 74 H LEU A 99 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 91.00 -177.40 REMARK 500 1 SER A 3 147.36 -172.58 REMARK 500 1 SER A 6 105.99 63.07 REMARK 500 1 SER A 12 106.48 -38.04 REMARK 500 1 ASN A 13 54.76 81.98 REMARK 500 1 ASN A 61 -173.75 -69.41 REMARK 500 1 THR A 87 40.24 -94.19 REMARK 500 1 HIS A 97 39.49 -149.70 REMARK 500 1 LYS A 107 104.53 -40.78 REMARK 500 1 SER A 111 133.22 66.81 REMARK 500 2 SER A 6 -60.55 -155.90 REMARK 500 2 ASP A 8 -175.55 63.53 REMARK 500 2 LYS A 9 93.57 58.12 REMARK 500 2 SER A 12 95.89 -41.52 REMARK 500 2 ASN A 13 51.63 87.45 REMARK 500 2 SER A 86 123.58 -179.45 REMARK 500 2 THR A 87 46.35 -90.34 REMARK 500 2 HIS A 97 44.04 -148.63 REMARK 500 2 ALA A 104 137.82 82.98 REMARK 500 2 VAL A 106 72.76 -172.60 REMARK 500 2 SER A 112 -59.08 -122.57 REMARK 500 3 SER A 2 145.76 178.23 REMARK 500 3 SER A 5 110.91 -170.89 REMARK 500 3 ASP A 8 67.79 -178.04 REMARK 500 3 SER A 12 94.63 -39.48 REMARK 500 3 ASN A 13 49.45 86.86 REMARK 500 3 LYS A 46 40.03 -107.06 REMARK 500 3 SER A 86 123.63 -172.30 REMARK 500 3 THR A 87 44.79 -90.22 REMARK 500 3 HIS A 97 40.93 -147.08 REMARK 500 4 SER A 5 169.74 57.65 REMARK 500 4 SER A 12 107.85 -33.22 REMARK 500 4 ASN A 13 55.03 81.67 REMARK 500 4 LYS A 46 45.30 -96.42 REMARK 500 4 ASN A 61 173.80 -56.41 REMARK 500 4 ARG A 73 129.46 -37.02 REMARK 500 4 THR A 87 42.57 -105.48 REMARK 500 4 HIS A 97 37.73 -151.35 REMARK 500 4 TRP A 102 -163.69 -107.92 REMARK 500 4 LYS A 107 75.18 -117.63 REMARK 500 4 SER A 108 -55.96 178.71 REMARK 500 4 SER A 112 163.99 67.01 REMARK 500 5 SER A 2 -59.69 -132.92 REMARK 500 5 SER A 5 141.81 -179.80 REMARK 500 5 SER A 6 148.87 -176.41 REMARK 500 5 ASP A 8 173.32 -48.00 REMARK 500 5 LYS A 9 81.20 73.10 REMARK 500 5 SER A 12 99.65 -47.82 REMARK 500 5 ASN A 13 51.02 88.23 REMARK 500 5 ASN A 61 -169.74 -70.25 REMARK 500 REMARK 500 THIS ENTRY HAS 232 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001003531.3 RELATED DB: TARGETDB DBREF 2COK A 8 107 UNP P09874 PARP1_HUMAN 386 485 SEQADV 2COK GLY A 1 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 2 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 3 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 4 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 5 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 6 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 7 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 101 UNP P09874 PRO 479 ENGINEERED MUTATION SEQADV 2COK SER A 108 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 109 UNP P09874 CLONING ARTIFACT SEQADV 2COK PRO A 110 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 111 UNP P09874 CLONING ARTIFACT SEQADV 2COK SER A 112 UNP P09874 CLONING ARTIFACT SEQADV 2COK GLY A 113 UNP P09874 CLONING ARTIFACT SEQRES 1 A 113 GLY SER SER GLY SER SER GLY ASP LYS PRO LEU SER ASN SEQRES 2 A 113 MET LYS ILE LEU THR LEU GLY LYS LEU SER ARG ASN LYS SEQRES 3 A 113 ASP GLU VAL LYS ALA MET ILE GLU LYS LEU GLY GLY LYS SEQRES 4 A 113 LEU THR GLY THR ALA ASN LYS ALA SER LEU CYS ILE SER SEQRES 5 A 113 THR LYS LYS GLU VAL GLU LYS MET ASN LYS LYS MET GLU SEQRES 6 A 113 GLU VAL LYS GLU ALA ASN ILE ARG VAL VAL SER GLU ASP SEQRES 7 A 113 PHE LEU GLN ASP VAL SER ALA SER THR LYS SER LEU GLN SEQRES 8 A 113 GLU LEU PHE LEU ALA HIS ILE LEU SER SER TRP GLY ALA SEQRES 9 A 113 GLU VAL LYS SER GLY PRO SER SER GLY HELIX 1 1 ASN A 25 LEU A 36 1 12 HELIX 2 2 THR A 53 MET A 60 1 8 HELIX 3 3 ASN A 61 ALA A 70 1 10 HELIX 4 4 GLU A 77 ALA A 85 1 9 HELIX 5 5 SER A 89 HIS A 97 1 9 SHEET 1 A 4 LYS A 39 THR A 41 0 SHEET 2 A 4 LYS A 15 THR A 18 1 N ILE A 16 O THR A 41 SHEET 3 A 4 LEU A 49 ILE A 51 1 O ILE A 51 N LEU A 17 SHEET 4 A 4 VAL A 74 VAL A 75 1 O VAL A 75 N CYS A 50 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1