HEADER RNA BINDING PROTEIN 19-MAY-05 2CQ4 TITLE SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING MOTIF PROTEIN TITLE 2 23 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA BINDING MOTIF PROTEIN 23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RBM23; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050131-08; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CQ4 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CQ4 1 VERSN REVDAT 1 19-NOV-05 2CQ4 0 JRNL AUTH K.TSUDA,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RNA BINDING DOMAIN IN RNA BINDING JRNL TITL 2 MOTIF PROTEIN 23 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CQ4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-MAY-05. REMARK 100 THE DEPOSITION ID IS D_1000024495. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.07MM 13C/15N-PROTEIN, 20MM D REMARK 210 -TRIS-HCL (PH 7.0), 100MM NACL, REMARK 210 1MM D-DTT, 0.02% NAN3, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 126 143.71 -172.19 REMARK 500 1 VAL A 139 41.81 -86.06 REMARK 500 1 PRO A 144 -19.01 -45.78 REMARK 500 1 ARG A 150 43.99 -83.94 REMARK 500 1 ARG A 160 50.96 -118.39 REMARK 500 1 THR A 211 102.17 -35.52 REMARK 500 1 ARG A 214 107.98 -46.75 REMARK 500 1 PRO A 219 152.27 -49.07 REMARK 500 1 ASN A 230 -39.90 -38.74 REMARK 500 1 SER A 237 159.85 -43.14 REMARK 500 2 LEU A 142 94.17 -69.19 REMARK 500 2 PRO A 144 -19.42 -45.04 REMARK 500 2 ARG A 150 37.70 -83.35 REMARK 500 2 ASP A 165 -36.86 -38.54 REMARK 500 2 ARG A 188 -59.89 -120.93 REMARK 500 2 ARG A 189 -51.20 -129.84 REMARK 500 2 THR A 211 118.13 -36.76 REMARK 500 2 ARG A 214 104.63 -47.49 REMARK 500 2 SER A 225 42.57 -88.57 REMARK 500 3 PRO A 134 172.07 -47.23 REMARK 500 3 GLU A 137 154.73 -37.26 REMARK 500 3 PRO A 144 -19.36 -45.19 REMARK 500 3 ARG A 150 43.99 -87.70 REMARK 500 3 ARG A 160 42.01 -98.28 REMARK 500 3 ASP A 184 -59.18 -126.99 REMARK 500 3 SER A 187 -60.32 -101.98 REMARK 500 3 THR A 211 98.18 -35.79 REMARK 500 3 ARG A 214 108.71 -53.11 REMARK 500 3 GLN A 226 43.61 -85.86 REMARK 500 3 PRO A 235 42.10 -78.18 REMARK 500 4 LEU A 142 115.44 -34.74 REMARK 500 4 PRO A 144 -16.05 -48.88 REMARK 500 4 ARG A 150 46.80 -82.50 REMARK 500 4 ARG A 160 46.67 -98.57 REMARK 500 4 SER A 183 40.71 75.02 REMARK 500 4 ARG A 185 77.99 -116.57 REMARK 500 4 ASN A 186 40.01 37.81 REMARK 500 4 ARG A 188 155.20 -38.59 REMARK 500 4 LYS A 191 126.40 -35.38 REMARK 500 4 THR A 211 99.50 -38.01 REMARK 500 4 ARG A 214 109.90 -54.51 REMARK 500 4 ALA A 224 107.53 -59.09 REMARK 500 4 GLN A 226 41.00 -94.70 REMARK 500 4 ARG A 231 56.68 -92.31 REMARK 500 4 SER A 236 106.01 -59.31 REMARK 500 4 SER A 237 -55.99 -128.02 REMARK 500 5 SER A 129 52.14 34.36 REMARK 500 5 LYS A 132 45.39 34.42 REMARK 500 5 PRO A 144 -17.36 -47.40 REMARK 500 5 ARG A 150 39.57 -82.29 REMARK 500 REMARK 500 THIS ENTRY HAS 185 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002012635.1 RELATED DB: TARGETDB DBREF 2CQ4 A 132 232 UNP Q86U06 RBM23_HUMAN 132 232 SEQADV 2CQ4 GLY A 125 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 126 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 127 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 128 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 129 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 130 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 131 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 233 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 234 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 PRO A 235 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 236 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 SER A 237 UNP Q86U06 CLONING ARTIFACT SEQADV 2CQ4 GLY A 238 UNP Q86U06 CLONING ARTIFACT SEQRES 1 A 114 GLY SER SER GLY SER SER GLY LYS SER PRO VAL ARG GLU SEQRES 2 A 114 PRO VAL ASP ASN LEU SER PRO GLU GLU ARG ASP ALA ARG SEQRES 3 A 114 THR VAL PHE CYS MET GLN LEU ALA ALA ARG ILE ARG PRO SEQRES 4 A 114 ARG ASP LEU GLU ASP PHE PHE SER ALA VAL GLY LYS VAL SEQRES 5 A 114 ARG ASP VAL ARG ILE ILE SER ASP ARG ASN SER ARG ARG SEQRES 6 A 114 SER LYS GLY ILE ALA TYR VAL GLU PHE CYS GLU ILE GLN SEQRES 7 A 114 SER VAL PRO LEU ALA ILE GLY LEU THR GLY GLN ARG LEU SEQRES 8 A 114 LEU GLY VAL PRO ILE ILE VAL GLN ALA SER GLN ALA GLU SEQRES 9 A 114 LYS ASN ARG LEU SER GLY PRO SER SER GLY HELIX 1 1 GLU A 145 ARG A 150 1 6 HELIX 2 2 ARG A 162 SER A 171 1 10 HELIX 3 3 GLU A 200 GLN A 202 5 3 HELIX 4 4 SER A 203 THR A 211 1 9 HELIX 5 5 SER A 225 SER A 233 1 9 SHEET 1 A 5 VAL A 176 ILE A 181 0 SHEET 2 A 5 ALA A 194 PHE A 198 -1 O TYR A 195 N ARG A 180 SHEET 3 A 5 THR A 151 MET A 155 -1 N CYS A 154 O ALA A 194 SHEET 4 A 5 VAL A 218 ALA A 224 -1 O ILE A 221 N MET A 155 SHEET 5 A 5 GLN A 213 LEU A 215 -1 N LEU A 215 O VAL A 218 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1