HEADER CHAPERONE 24-MAY-05 2CTR TITLE SOLUTION STRUCTURE OF J-DOMAIN FROM HUMAN DNAJ SUBFAMILY B MENBER 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNAJ HOMOLOG SUBFAMILY B MEMBER 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: J-DOMAIN; COMPND 5 SYNONYM: MICROVASCULAR ENDOTHELIAL DIFFERENTIATION GENE-1 PROTEIN, COMPND 6 MDG-1, UNQ743/PRO1471; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DNAJB9; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P040517-03; SOURCE 8 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS DNAJ, J-DOMAIN, CHAPERONE, HELIX-TURN-HELIX, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL KEYWDS 3 ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.KOBAYASHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2CTR 1 REMARK SEQADV REVDAT 2 24-FEB-09 2CTR 1 VERSN REVDAT 1 24-NOV-05 2CTR 0 JRNL AUTH N.KOBAYASHI,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF J-DOMAIN FROM HUMAN DNAJ SUBFAMILY B JRNL TITL 2 MENBER 9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CTR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-JUN-05. REMARK 100 THE DEPOSITION ID IS D_1000024610. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11MM DNAJ DOMAIN U-13C,15N; REMARK 210 20MM PHOSPHATE BUFFER NA (PH7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9297, CYANA 2.0.17 REMARK 210 METHOD USED : TOSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 10 -34.32 -39.77 REMARK 500 1 ALA A 32 -36.80 -36.47 REMARK 500 1 ALA A 62 -66.76 -91.83 REMARK 500 1 THR A 77 49.77 -93.24 REMARK 500 2 SER A 2 41.68 -105.37 REMARK 500 2 TYR A 10 -28.12 -39.06 REMARK 500 2 ALA A 32 -37.16 -35.90 REMARK 500 2 LYS A 41 43.28 -94.07 REMARK 500 2 ALA A 62 -65.88 -91.71 REMARK 500 2 ALA A 75 -67.19 -105.02 REMARK 500 2 THR A 77 73.73 -117.88 REMARK 500 3 SER A 2 108.54 -59.40 REMARK 500 3 TYR A 10 -38.27 -36.49 REMARK 500 3 ALA A 32 -38.66 -38.28 REMARK 500 3 ALA A 62 -70.29 -68.18 REMARK 500 3 PRO A 85 88.35 -69.80 REMARK 500 4 SER A 5 -73.58 -36.85 REMARK 500 4 ALA A 32 -37.86 -33.91 REMARK 500 4 LYS A 41 73.21 -117.53 REMARK 500 4 ALA A 75 -60.77 -103.14 REMARK 500 4 SER A 86 124.23 -38.09 REMARK 500 5 TYR A 10 -35.63 -34.40 REMARK 500 5 ALA A 32 -37.59 -37.27 REMARK 500 5 LYS A 41 38.07 -97.40 REMARK 500 5 GLU A 57 -39.47 -34.44 REMARK 500 5 ALA A 62 -71.51 -71.81 REMARK 500 5 THR A 77 52.49 -100.44 REMARK 500 5 SER A 87 44.78 34.44 REMARK 500 6 TYR A 10 -33.67 -34.50 REMARK 500 6 ALA A 32 -35.57 -38.09 REMARK 500 6 ALA A 75 -61.75 -108.58 REMARK 500 6 SER A 78 49.92 38.09 REMARK 500 6 GLN A 82 116.76 -175.18 REMARK 500 7 ALA A 32 -35.12 -37.48 REMARK 500 7 LYS A 41 45.71 -86.17 REMARK 500 7 ALA A 62 -70.19 -66.68 REMARK 500 7 SER A 87 168.44 -48.07 REMARK 500 8 SER A 6 -60.97 -91.35 REMARK 500 8 TYR A 10 -38.20 -35.68 REMARK 500 8 LYS A 41 35.99 -90.21 REMARK 500 8 HIS A 73 -60.09 -102.77 REMARK 500 8 THR A 77 45.42 -107.43 REMARK 500 9 TYR A 10 -32.62 -36.92 REMARK 500 9 ALA A 32 -34.32 -39.02 REMARK 500 9 PRO A 37 0.48 -69.72 REMARK 500 9 LYS A 41 41.19 -106.52 REMARK 500 10 TYR A 10 -34.55 -36.21 REMARK 500 10 ALA A 32 -35.14 -37.41 REMARK 500 10 PRO A 37 1.20 -69.76 REMARK 500 10 LYS A 41 42.84 -104.17 REMARK 500 REMARK 500 THIS ENTRY HAS 113 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001506.1 RELATED DB: TARGETDB DBREF 2CTR A 8 82 UNP Q9UBS3 DNJB9_HUMAN 26 100 SEQADV 2CTR GLY A 1 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR SER A 2 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR SER A 3 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR GLY A 4 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR SER A 5 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR SER A 6 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR GLY A 7 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR SER A 83 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR GLY A 84 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR PRO A 85 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR SER A 86 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR SER A 87 UNP Q9UBS3 CLONING ARTIFACT SEQADV 2CTR GLY A 88 UNP Q9UBS3 CLONING ARTIFACT SEQRES 1 A 88 GLY SER SER GLY SER SER GLY SER TYR TYR ASP ILE LEU SEQRES 2 A 88 GLY VAL PRO LYS SER ALA SER GLU ARG GLN ILE LYS LYS SEQRES 3 A 88 ALA PHE HIS LYS LEU ALA MET LYS TYR HIS PRO ASP LYS SEQRES 4 A 88 ASN LYS SER PRO ASP ALA GLU ALA LYS PHE ARG GLU ILE SEQRES 5 A 88 ALA GLU ALA TYR GLU THR LEU SER ASP ALA ASN ARG ARG SEQRES 6 A 88 LYS GLU TYR ASP THR LEU GLY HIS SER ALA PHE THR SER SEQRES 7 A 88 GLY LYS GLY GLN SER GLY PRO SER SER GLY HELIX 1 1 SER A 8 GLY A 14 1 7 HELIX 2 2 SER A 20 TYR A 35 1 16 HELIX 3 3 SER A 42 ASP A 61 1 20 HELIX 4 4 ALA A 62 LEU A 71 1 10 HELIX 5 5 GLY A 72 THR A 77 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1