data_2CU6 # _entry.id 2CU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CU6 RCSB RCSB024622 WWPDB D_1000024622 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id ttk003001362.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CU6 _pdbx_database_status.recvd_initial_deposition_date 2005-05-25 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Satoh, S.' 1 'Yokoyama, S.' 2 'Kuramitsu, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Crystal Structure Of The dTDP-4-keto-L-rhamnose reductase-related Protein From Thermus Thermophilus HB8' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Satoh, S.' 1 primary 'Yokoyama, S.' 2 primary 'Kuramitsu, S.' 3 # _cell.entry_id 2CU6 _cell.length_a 121.805 _cell.length_b 121.805 _cell.length_c 121.805 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2CU6 _symmetry.space_group_name_H-M 'I 2 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dTDP-4-keto-L-rhamnose reductase-related Protein' 11541.915 2 ? ? ? ? 2 water nat water 18.015 96 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)TARNPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVR(MSE)TLTTPGCPLHDSLGEAVRQALSRLP GVEEVEVEVTFEPPWTLARLSEKARRLLGWG ; _entity_poly.pdbx_seq_one_letter_code_can ;MTARNPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVE VTFEPPWTLARLSEKARRLLGWG ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ttk003001362.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 THR n 1 3 ALA n 1 4 ARG n 1 5 ASN n 1 6 PRO n 1 7 LEU n 1 8 GLU n 1 9 ALA n 1 10 GLN n 1 11 ALA n 1 12 TRP n 1 13 ALA n 1 14 LEU n 1 15 LEU n 1 16 GLU n 1 17 ALA n 1 18 VAL n 1 19 TYR n 1 20 ASP n 1 21 PRO n 1 22 GLU n 1 23 LEU n 1 24 GLY n 1 25 LEU n 1 26 ASP n 1 27 VAL n 1 28 VAL n 1 29 ASN n 1 30 LEU n 1 31 GLY n 1 32 LEU n 1 33 ILE n 1 34 TYR n 1 35 ASP n 1 36 LEU n 1 37 VAL n 1 38 VAL n 1 39 GLU n 1 40 PRO n 1 41 PRO n 1 42 ARG n 1 43 ALA n 1 44 TYR n 1 45 VAL n 1 46 ARG n 1 47 MSE n 1 48 THR n 1 49 LEU n 1 50 THR n 1 51 THR n 1 52 PRO n 1 53 GLY n 1 54 CYS n 1 55 PRO n 1 56 LEU n 1 57 HIS n 1 58 ASP n 1 59 SER n 1 60 LEU n 1 61 GLY n 1 62 GLU n 1 63 ALA n 1 64 VAL n 1 65 ARG n 1 66 GLN n 1 67 ALA n 1 68 LEU n 1 69 SER n 1 70 ARG n 1 71 LEU n 1 72 PRO n 1 73 GLY n 1 74 VAL n 1 75 GLU n 1 76 GLU n 1 77 VAL n 1 78 GLU n 1 79 VAL n 1 80 GLU n 1 81 VAL n 1 82 THR n 1 83 PHE n 1 84 GLU n 1 85 PRO n 1 86 PRO n 1 87 TRP n 1 88 THR n 1 89 LEU n 1 90 ALA n 1 91 ARG n 1 92 LEU n 1 93 SER n 1 94 GLU n 1 95 LYS n 1 96 ALA n 1 97 ARG n 1 98 ARG n 1 99 LEU n 1 100 LEU n 1 101 GLY n 1 102 TRP n 1 103 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Thermus thermophilus' _entity_src_gen.gene_src_strain HB8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermus thermophilus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 300852 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q53W28_THET8 _struct_ref.pdbx_db_accession Q53W28 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTARNPLEAQAWALLEAVYDPELGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVE VTFEPPWTLARLSEKARRLLGWG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2CU6 A 1 ? 103 ? Q53W28 1 ? 103 ? 1 103 2 1 2CU6 B 1 ? 103 ? Q53W28 1 ? 103 ? 1 103 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CU6 MSE A 1 ? UNP Q53W28 MET 1 'MODIFIED RESIDUE' 1 1 1 2CU6 MSE A 47 ? UNP Q53W28 MET 47 'MODIFIED RESIDUE' 47 2 2 2CU6 MSE B 1 ? UNP Q53W28 MET 1 'MODIFIED RESIDUE' 1 3 2 2CU6 MSE B 47 ? UNP Q53W28 MET 47 'MODIFIED RESIDUE' 47 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CU6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.56 _exptl_crystal.density_percent_sol 65.20 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.0 _exptl_crystal_grow.pdbx_details 'Sodium Acetate, PEG 400, Magnesium Chloride, pH 4.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RIGAKU JUPITER 210' _diffrn_detector.pdbx_collection_date 2004-11-08 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL26B1' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL26B1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00000 # _reflns.entry_id 2CU6 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.00 _reflns.d_resolution_high 2.00 _reflns.number_obs 20442 _reflns.number_all 20442 _reflns.percent_possible_obs 100 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37.6 _reflns.B_iso_Wilson_estimate 16.3 _reflns.pdbx_redundancy 14.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.3 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 9.0 _reflns_shell.pdbx_redundancy 14.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 2026 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2CU6 _refine.ls_number_reflns_obs 20415 _refine.ls_number_reflns_all 20415 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F .0 _refine.pdbx_data_cutoff_high_absF 3387823.06 _refine.pdbx_data_cutoff_low_absF .000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 32.16 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 99.9 _refine.ls_R_factor_obs 0.221 _refine.ls_R_factor_all 0.24 _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.239 _refine.ls_R_factor_R_free_error .007 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1041 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 27.4 _refine.aniso_B[1][1] .00 _refine.aniso_B[2][2] .00 _refine.aniso_B[3][3] .00 _refine.aniso_B[1][2] .00 _refine.aniso_B[1][3] .00 _refine.aniso_B[2][3] .00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol .378654 _refine.solvent_model_param_bsol 45.9527 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2CU6 _refine_analyze.Luzzati_coordinate_error_obs .23 _refine_analyze.Luzzati_sigma_a_obs .06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free .26 _refine_analyze.Luzzati_sigma_a_free .14 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1412 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 1508 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 32.16 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d .008 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.4 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d .74 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.13 _refine_ls_shell.number_reflns_R_work 3144 _refine_ls_shell.R_factor_R_work 0.219 _refine_ls_shell.percent_reflns_obs 99.2 _refine_ls_shell.R_factor_R_free 0.259 _refine_ls_shell.R_factor_R_free_error .019 _refine_ls_shell.percent_reflns_R_free 5.7 _refine_ls_shell.number_reflns_R_free 191 _refine_ls_shell.number_reflns_obs 3310 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water.top 'X-RAY DIFFRACTION' # _struct.entry_id 2CU6 _struct.title 'Crystal Structure Of The dTDP-4-keto-L-rhamnose reductase-related Protein From Thermus Thermophilus HB8' _struct.pdbx_descriptor 'dTDP-4-keto-L-rhamnose reductase-related Protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CU6 _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;Thermus Thermophilus HB8, dTDP-4-keto-L-rhamnose reductase-related protein, Structural Genomics, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 6 ? GLU A 16 ? PRO A 6 GLU A 16 1 ? 11 HELX_P HELX_P2 2 ASP A 58 ? ARG A 70 ? ASP A 58 ARG A 70 1 ? 13 HELX_P HELX_P3 3 THR A 88 ? LEU A 92 ? THR A 88 LEU A 92 5 ? 5 HELX_P HELX_P4 4 PRO B 6 ? GLU B 16 ? PRO B 6 GLU B 16 1 ? 11 HELX_P HELX_P5 5 ASP B 58 ? ARG B 70 ? ASP B 58 ARG B 70 1 ? 13 HELX_P HELX_P6 6 THR B 88 ? LEU B 92 ? THR B 88 LEU B 92 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 54 SG ? ? ? 1_555 B CYS 54 SG ? ? A CYS 54 B CYS 54 3_455 ? ? ? ? ? ? ? 2.671 ? covale1 covale ? ? A ARG 46 C ? ? ? 1_555 A MSE 47 N ? ? A ARG 46 A MSE 47 1_555 ? ? ? ? ? ? ? 1.325 ? covale2 covale ? ? A MSE 47 C ? ? ? 1_555 A THR 48 N ? ? A MSE 47 A THR 48 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale ? ? B ARG 46 C ? ? ? 1_555 B MSE 47 N ? ? B ARG 46 B MSE 47 1_555 ? ? ? ? ? ? ? 1.324 ? covale4 covale ? ? B MSE 47 C ? ? ? 1_555 B THR 48 N ? ? B MSE 47 B THR 48 1_555 ? ? ? ? ? ? ? 1.328 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 PRO 40 A . ? PRO 40 A PRO 41 A ? PRO 41 A 1 0.30 2 GLU 84 A . ? GLU 84 A PRO 85 A ? PRO 85 A 1 -0.10 3 PRO 40 B . ? PRO 40 B PRO 41 B ? PRO 41 B 1 0.32 4 GLU 84 B . ? GLU 84 B PRO 85 B ? PRO 85 B 1 -0.07 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? C ? 2 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 19 ? ASP A 20 ? TYR A 19 ASP A 20 A 2 LEU A 25 ? ASP A 26 ? LEU A 25 ASP A 26 B 1 ILE A 33 ? GLU A 39 ? ILE A 33 GLU A 39 B 2 ARG A 42 ? MSE A 47 ? ARG A 42 MSE A 47 B 3 GLU A 76 ? VAL A 81 ? GLU A 76 VAL A 81 C 1 TYR B 19 ? ASP B 20 ? TYR B 19 ASP B 20 C 2 LEU B 25 ? ASP B 26 ? LEU B 25 ASP B 26 D 1 ILE B 33 ? GLU B 39 ? ILE B 33 GLU B 39 D 2 ARG B 42 ? MSE B 47 ? ARG B 42 MSE B 47 D 3 GLU B 76 ? VAL B 81 ? GLU B 76 VAL B 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASP A 20 ? N ASP A 20 O LEU A 25 ? O LEU A 25 B 1 2 N VAL A 37 ? N VAL A 37 O TYR A 44 ? O TYR A 44 B 2 3 N VAL A 45 ? N VAL A 45 O GLU A 80 ? O GLU A 80 C 1 2 N ASP B 20 ? N ASP B 20 O LEU B 25 ? O LEU B 25 D 1 2 N VAL B 37 ? N VAL B 37 O TYR B 44 ? O TYR B 44 D 2 3 N VAL B 45 ? N VAL B 45 O GLU B 80 ? O GLU B 80 # _database_PDB_matrix.entry_id 2CU6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] .000000 _database_PDB_matrix.origx[1][3] .000000 _database_PDB_matrix.origx[2][1] .000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] .000000 _database_PDB_matrix.origx[3][1] .000000 _database_PDB_matrix.origx[3][2] .000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] .00000 _database_PDB_matrix.origx_vector[2] .00000 _database_PDB_matrix.origx_vector[3] .00000 # _atom_sites.entry_id 2CU6 _atom_sites.fract_transf_matrix[1][1] .008210 _atom_sites.fract_transf_matrix[1][2] .000000 _atom_sites.fract_transf_matrix[1][3] .000000 _atom_sites.fract_transf_matrix[2][1] .000000 _atom_sites.fract_transf_matrix[2][2] .008210 _atom_sites.fract_transf_matrix[2][3] .000000 _atom_sites.fract_transf_matrix[3][1] .000000 _atom_sites.fract_transf_matrix[3][2] .000000 _atom_sites.fract_transf_matrix[3][3] .008210 _atom_sites.fract_transf_vector[1] .00000 _atom_sites.fract_transf_vector[2] .00000 _atom_sites.fract_transf_vector[3] .00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 ALA 3 3 ? ? ? A . n A 1 4 ARG 4 4 ? ? ? A . n A 1 5 ASN 5 5 ? ? ? A . n A 1 6 PRO 6 6 6 PRO PRO A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 GLN 10 10 10 GLN GLN A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 TRP 12 12 12 TRP TRP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 ASP 20 20 20 ASP ASP A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 ASP 35 35 35 ASP ASP A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 PRO 40 40 40 PRO PRO A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 ARG 42 42 42 ARG ARG A . n A 1 43 ALA 43 43 43 ALA ALA A . n A 1 44 TYR 44 44 44 TYR TYR A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 MSE 47 47 47 MSE MSE A . n A 1 48 THR 48 48 48 THR THR A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 GLY 53 53 53 GLY GLY A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 ASP 58 58 58 ASP ASP A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ALA 63 63 63 ALA ALA A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 ARG 65 65 65 ARG ARG A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 PRO 85 85 85 PRO PRO A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 THR 88 88 88 THR THR A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 ARG 91 91 91 ARG ARG A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 GLU 94 94 94 GLU GLU A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 ? ? ? A . n A 1 98 ARG 98 98 ? ? ? A . n A 1 99 LEU 99 99 ? ? ? A . n A 1 100 LEU 100 100 ? ? ? A . n A 1 101 GLY 101 101 ? ? ? A . n A 1 102 TRP 102 102 ? ? ? A . n A 1 103 GLY 103 103 ? ? ? A . n B 1 1 MSE 1 1 ? ? ? B . n B 1 2 THR 2 2 ? ? ? B . n B 1 3 ALA 3 3 ? ? ? B . n B 1 4 ARG 4 4 ? ? ? B . n B 1 5 ASN 5 5 ? ? ? B . n B 1 6 PRO 6 6 6 PRO PRO B . n B 1 7 LEU 7 7 7 LEU LEU B . n B 1 8 GLU 8 8 8 GLU GLU B . n B 1 9 ALA 9 9 9 ALA ALA B . n B 1 10 GLN 10 10 10 GLN GLN B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 TRP 12 12 12 TRP TRP B . n B 1 13 ALA 13 13 13 ALA ALA B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 LEU 15 15 15 LEU LEU B . n B 1 16 GLU 16 16 16 GLU GLU B . n B 1 17 ALA 17 17 17 ALA ALA B . n B 1 18 VAL 18 18 18 VAL VAL B . n B 1 19 TYR 19 19 19 TYR TYR B . n B 1 20 ASP 20 20 20 ASP ASP B . n B 1 21 PRO 21 21 21 PRO PRO B . n B 1 22 GLU 22 22 22 GLU GLU B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 GLY 24 24 24 GLY GLY B . n B 1 25 LEU 25 25 25 LEU LEU B . n B 1 26 ASP 26 26 26 ASP ASP B . n B 1 27 VAL 27 27 27 VAL VAL B . n B 1 28 VAL 28 28 28 VAL VAL B . n B 1 29 ASN 29 29 29 ASN ASN B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 GLY 31 31 31 GLY GLY B . n B 1 32 LEU 32 32 32 LEU LEU B . n B 1 33 ILE 33 33 33 ILE ILE B . n B 1 34 TYR 34 34 34 TYR TYR B . n B 1 35 ASP 35 35 35 ASP ASP B . n B 1 36 LEU 36 36 36 LEU LEU B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 GLU 39 39 39 GLU GLU B . n B 1 40 PRO 40 40 40 PRO PRO B . n B 1 41 PRO 41 41 41 PRO PRO B . n B 1 42 ARG 42 42 42 ARG ARG B . n B 1 43 ALA 43 43 43 ALA ALA B . n B 1 44 TYR 44 44 44 TYR TYR B . n B 1 45 VAL 45 45 45 VAL VAL B . n B 1 46 ARG 46 46 46 ARG ARG B . n B 1 47 MSE 47 47 47 MSE MSE B . n B 1 48 THR 48 48 48 THR THR B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 THR 50 50 50 THR THR B . n B 1 51 THR 51 51 51 THR THR B . n B 1 52 PRO 52 52 52 PRO PRO B . n B 1 53 GLY 53 53 53 GLY GLY B . n B 1 54 CYS 54 54 54 CYS CYS B . n B 1 55 PRO 55 55 55 PRO PRO B . n B 1 56 LEU 56 56 56 LEU LEU B . n B 1 57 HIS 57 57 57 HIS HIS B . n B 1 58 ASP 58 58 58 ASP ASP B . n B 1 59 SER 59 59 59 SER SER B . n B 1 60 LEU 60 60 60 LEU LEU B . n B 1 61 GLY 61 61 61 GLY GLY B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 ALA 63 63 63 ALA ALA B . n B 1 64 VAL 64 64 64 VAL VAL B . n B 1 65 ARG 65 65 65 ARG ARG B . n B 1 66 GLN 66 66 66 GLN GLN B . n B 1 67 ALA 67 67 67 ALA ALA B . n B 1 68 LEU 68 68 68 LEU LEU B . n B 1 69 SER 69 69 69 SER SER B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 LEU 71 71 71 LEU LEU B . n B 1 72 PRO 72 72 72 PRO PRO B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 VAL 74 74 74 VAL VAL B . n B 1 75 GLU 75 75 75 GLU GLU B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLU 78 78 78 GLU GLU B . n B 1 79 VAL 79 79 79 VAL VAL B . n B 1 80 GLU 80 80 80 GLU GLU B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 THR 82 82 82 THR THR B . n B 1 83 PHE 83 83 83 PHE PHE B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 PRO 85 85 85 PRO PRO B . n B 1 86 PRO 86 86 86 PRO PRO B . n B 1 87 TRP 87 87 87 TRP TRP B . n B 1 88 THR 88 88 88 THR THR B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 ALA 90 90 90 ALA ALA B . n B 1 91 ARG 91 91 91 ARG ARG B . n B 1 92 LEU 92 92 92 LEU LEU B . n B 1 93 SER 93 93 93 SER SER B . n B 1 94 GLU 94 94 94 GLU GLU B . n B 1 95 LYS 95 95 95 LYS LYS B . n B 1 96 ALA 96 96 96 ALA ALA B . n B 1 97 ARG 97 97 ? ? ? B . n B 1 98 ARG 98 98 ? ? ? B . n B 1 99 LEU 99 99 ? ? ? B . n B 1 100 LEU 100 100 ? ? ? B . n B 1 101 GLY 101 101 ? ? ? B . n B 1 102 TRP 102 102 ? ? ? B . n B 1 103 GLY 103 103 ? ? ? B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HOH 1 104 2 HOH WAT A . C 2 HOH 2 105 3 HOH WAT A . C 2 HOH 3 106 5 HOH WAT A . C 2 HOH 4 107 8 HOH WAT A . C 2 HOH 5 108 10 HOH WAT A . C 2 HOH 6 109 11 HOH WAT A . C 2 HOH 7 110 13 HOH WAT A . C 2 HOH 8 111 14 HOH WAT A . C 2 HOH 9 112 15 HOH WAT A . C 2 HOH 10 113 16 HOH WAT A . C 2 HOH 11 114 19 HOH WAT A . C 2 HOH 12 115 20 HOH WAT A . C 2 HOH 13 116 22 HOH WAT A . C 2 HOH 14 117 26 HOH WAT A . C 2 HOH 15 118 28 HOH WAT A . C 2 HOH 16 119 31 HOH WAT A . C 2 HOH 17 120 33 HOH WAT A . C 2 HOH 18 121 35 HOH WAT A . C 2 HOH 19 122 36 HOH WAT A . C 2 HOH 20 123 39 HOH WAT A . C 2 HOH 21 124 44 HOH WAT A . C 2 HOH 22 125 45 HOH WAT A . C 2 HOH 23 126 46 HOH WAT A . C 2 HOH 24 127 49 HOH WAT A . C 2 HOH 25 128 52 HOH WAT A . C 2 HOH 26 129 53 HOH WAT A . C 2 HOH 27 130 54 HOH WAT A . C 2 HOH 28 131 55 HOH WAT A . C 2 HOH 29 132 58 HOH WAT A . C 2 HOH 30 133 59 HOH WAT A . C 2 HOH 31 134 61 HOH WAT A . C 2 HOH 32 135 62 HOH WAT A . C 2 HOH 33 136 63 HOH WAT A . C 2 HOH 34 137 64 HOH WAT A . C 2 HOH 35 138 66 HOH WAT A . C 2 HOH 36 139 68 HOH WAT A . C 2 HOH 37 140 69 HOH WAT A . C 2 HOH 38 141 71 HOH WAT A . C 2 HOH 39 142 72 HOH WAT A . C 2 HOH 40 143 74 HOH WAT A . C 2 HOH 41 144 76 HOH WAT A . C 2 HOH 42 145 77 HOH WAT A . C 2 HOH 43 146 79 HOH WAT A . C 2 HOH 44 147 82 HOH WAT A . C 2 HOH 45 148 83 HOH WAT A . C 2 HOH 46 149 87 HOH WAT A . C 2 HOH 47 150 89 HOH WAT A . C 2 HOH 48 151 91 HOH WAT A . C 2 HOH 49 152 92 HOH WAT A . C 2 HOH 50 153 93 HOH WAT A . C 2 HOH 51 154 96 HOH WAT A . D 2 HOH 1 104 1 HOH WAT B . D 2 HOH 2 105 4 HOH WAT B . D 2 HOH 3 106 6 HOH WAT B . D 2 HOH 4 107 7 HOH WAT B . D 2 HOH 5 108 9 HOH WAT B . D 2 HOH 6 109 12 HOH WAT B . D 2 HOH 7 110 17 HOH WAT B . D 2 HOH 8 111 18 HOH WAT B . D 2 HOH 9 112 21 HOH WAT B . D 2 HOH 10 113 23 HOH WAT B . D 2 HOH 11 114 24 HOH WAT B . D 2 HOH 12 115 25 HOH WAT B . D 2 HOH 13 116 27 HOH WAT B . D 2 HOH 14 117 29 HOH WAT B . D 2 HOH 15 118 30 HOH WAT B . D 2 HOH 16 119 32 HOH WAT B . D 2 HOH 17 120 34 HOH WAT B . D 2 HOH 18 121 37 HOH WAT B . D 2 HOH 19 122 38 HOH WAT B . D 2 HOH 20 123 40 HOH WAT B . D 2 HOH 21 124 41 HOH WAT B . D 2 HOH 22 125 42 HOH WAT B . D 2 HOH 23 126 43 HOH WAT B . D 2 HOH 24 127 47 HOH WAT B . D 2 HOH 25 128 48 HOH WAT B . D 2 HOH 26 129 50 HOH WAT B . D 2 HOH 27 130 51 HOH WAT B . D 2 HOH 28 131 56 HOH WAT B . D 2 HOH 29 132 57 HOH WAT B . D 2 HOH 30 133 60 HOH WAT B . D 2 HOH 31 134 65 HOH WAT B . D 2 HOH 32 135 67 HOH WAT B . D 2 HOH 33 136 70 HOH WAT B . D 2 HOH 34 137 73 HOH WAT B . D 2 HOH 35 138 75 HOH WAT B . D 2 HOH 36 139 78 HOH WAT B . D 2 HOH 37 140 80 HOH WAT B . D 2 HOH 38 141 81 HOH WAT B . D 2 HOH 39 142 84 HOH WAT B . D 2 HOH 40 143 85 HOH WAT B . D 2 HOH 41 144 86 HOH WAT B . D 2 HOH 42 145 88 HOH WAT B . D 2 HOH 43 146 90 HOH WAT B . D 2 HOH 44 147 94 HOH WAT B . D 2 HOH 45 148 95 HOH WAT B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 47 A MSE 47 ? MET SELENOMETHIONINE 2 B MSE 47 B MSE 47 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 software_defined_assembly PISA octameric 8 3 software_defined_assembly PQS monomeric 1 4 software_defined_assembly PQS monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D 2 1,2,3,4 A,B,C,D 3 1 A,C 4 1 B,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 10610 ? 2 MORE -76 ? 2 'SSA (A^2)' 33520 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_455 -x-1,-y,z -1.0000000000 0.0000000000 0.0000000000 -121.8050000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_455 -x-1,y,-z -1.0000000000 0.0000000000 0.0000000000 -121.8050000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-25 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Source and taxonomy' 4 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MOLREP phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 40 ? ? -37.90 138.78 2 1 PRO B 40 ? ? -37.76 139.03 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE 1 ? A MSE 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A ALA 3 ? A ALA 3 4 1 Y 1 A ARG 4 ? A ARG 4 5 1 Y 1 A ASN 5 ? A ASN 5 6 1 Y 1 A ARG 97 ? A ARG 97 7 1 Y 1 A ARG 98 ? A ARG 98 8 1 Y 1 A LEU 99 ? A LEU 99 9 1 Y 1 A LEU 100 ? A LEU 100 10 1 Y 1 A GLY 101 ? A GLY 101 11 1 Y 1 A TRP 102 ? A TRP 102 12 1 Y 1 A GLY 103 ? A GLY 103 13 1 Y 1 B MSE 1 ? B MSE 1 14 1 Y 1 B THR 2 ? B THR 2 15 1 Y 1 B ALA 3 ? B ALA 3 16 1 Y 1 B ARG 4 ? B ARG 4 17 1 Y 1 B ASN 5 ? B ASN 5 18 1 Y 1 B ARG 97 ? B ARG 97 19 1 Y 1 B ARG 98 ? B ARG 98 20 1 Y 1 B LEU 99 ? B LEU 99 21 1 Y 1 B LEU 100 ? B LEU 100 22 1 Y 1 B GLY 101 ? B GLY 101 23 1 Y 1 B TRP 102 ? B TRP 102 24 1 Y 1 B GLY 103 ? B GLY 103 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #