HEADER HYDROLASE 17-JUN-05 2CW8 TITLE CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDONUCLEASE PI-PKOII; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 69014; SOURCE 4 STRAIN: KOD1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET8C KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.MATSUMURA,H.TAKAHASHI,T.INOUE,H.HASHIMOTO,M.NISHIOKA,S.FUJIWARA, AUTHOR 2 M.TAKAGI,T.IMANAKA,Y.KAI REVDAT 3 13-JUL-11 2CW8 1 VERSN REVDAT 2 24-FEB-09 2CW8 1 VERSN REVDAT 1 18-APR-06 2CW8 0 JRNL AUTH H.MATSUMURA,H.TAKAHASHI,T.INOUE,T.YAMAMOTO,H.HASHIMOTO, JRNL AUTH 2 M.NISHIOKA,S.FUJIWARA,M.TAKAGI,T.IMANAKA,Y.KAI JRNL TITL CRYSTAL STRUCTURE OF INTEIN HOMING ENDONUCLEASE II ENCODED JRNL TITL 2 IN DNA POLYMERASE GENE FROM HYPERTHERMOPHILIC ARCHAEON JRNL TITL 3 THERMOCOCCUS KODAKARAENSIS STRAIN KOD1 JRNL REF PROTEINS V. 63 711 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 16493661 JRNL DOI 10.1002/PROT.20858 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 275836.180 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.6 REMARK 3 NUMBER OF REFLECTIONS : 67647 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 3253 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 69.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 8552 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE : 0.3910 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 356 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.021 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 21.03000 REMARK 3 B22 (A**2) : -4.63000 REMARK 3 B33 (A**2) : -16.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.60 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.61 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.82 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.130 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.860 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.990 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 40.59 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GLL.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GLL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE FILE CONTAINS FRIEDEL PAIRS. REMARK 4 REMARK 4 2CW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-05. REMARK 100 THE RCSB ID CODE IS RCSB024694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792, 0.9794, 0.9840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.900 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE FILE CONTAINS FRIEDEL PAIRS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM PHOSPHATE, REMARK 280 SODIUM CHLORIDE, PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.74500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.74500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 51.98500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.27000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 51.98500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.27000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 72.74500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 51.98500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.27000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.74500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 51.98500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.27000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 83 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 TRP A 301 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 32 29.56 -143.19 REMARK 500 GLU A 39 77.97 -118.39 REMARK 500 LYS A 159 -104.69 -37.46 REMARK 500 LYS A 161 52.54 -110.52 REMARK 500 LYS A 162 96.42 -69.20 REMARK 500 PHE A 165 -72.01 -55.39 REMARK 500 LYS A 202 -51.80 -23.49 REMARK 500 ASN A 230 75.51 -116.72 REMARK 500 ARG A 234 62.59 60.25 REMARK 500 ASP A 245 30.10 -83.87 REMARK 500 ALA A 246 -29.98 -163.34 REMARK 500 ASN A 264 47.06 -109.21 REMARK 500 ASN A 296 -178.66 56.32 REMARK 500 PRO A 297 -104.18 -11.36 REMARK 500 LYS A 298 86.03 -66.26 REMARK 500 ASN A 299 84.41 -18.09 REMARK 500 TRP A 301 72.02 122.97 REMARK 500 ASN A 309 128.17 168.95 REMARK 500 PRO A 339 49.25 -87.89 REMARK 500 VAL A 353 -61.58 -102.45 REMARK 500 HIS A 387 70.70 -119.95 REMARK 500 LYS A 390 -159.92 -178.38 REMARK 500 SER A 423 66.80 -167.26 REMARK 500 LYS A 466 -148.64 -142.95 REMARK 500 ASP A 522 -59.84 69.65 REMARK 500 LEU A 532 115.26 78.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 TRP A 301 20.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2161 DISTANCE = 5.25 ANGSTROMS REMARK 525 HOH A2177 DISTANCE = 5.01 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2006 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CW7 RELATED DB: PDB DBREF 2CW8 A 1 537 UNP P77933 DPOL_PYRKO 852 1388 SEQADV 2CW8 MSE A 28 UNP P77933 MET 879 MODIFIED RESIDUE SEQADV 2CW8 MSE A 29 UNP P77933 MET 880 MODIFIED RESIDUE SEQADV 2CW8 ASN A 60 UNP P77933 LYS 911 SEE REMARK 999 SEQADV 2CW8 MSE A 154 UNP P77933 MET 1005 MODIFIED RESIDUE SEQADV 2CW8 MSE A 168 UNP P77933 MET 1019 MODIFIED RESIDUE SEQADV 2CW8 MSE A 250 UNP P77933 MET 1101 MODIFIED RESIDUE SEQADV 2CW8 MSE A 268 UNP P77933 MET 1119 MODIFIED RESIDUE SEQADV 2CW8 ARG A 269 UNP P77933 SER 1120 SEE REMARK 999 SEQADV 2CW8 LYS A 270 UNP P77933 PRO 1121 SEE REMARK 999 SEQADV 2CW8 MSE A 318 UNP P77933 MET 1169 MODIFIED RESIDUE SEQADV 2CW8 MSE A 350 UNP P77933 MET 1201 MODIFIED RESIDUE SEQADV 2CW8 MSE A 476 UNP P77933 MET 1327 MODIFIED RESIDUE SEQRES 1 A 537 SER ILE LEU PRO GLU GLU TRP LEU PRO VAL LEU GLU GLU SEQRES 2 A 537 GLY GLU VAL HIS PHE VAL ARG ILE GLY GLU LEU ILE ASP SEQRES 3 A 537 ARG MSE MSE GLU GLU ASN ALA GLY LYS VAL LYS ARG GLU SEQRES 4 A 537 GLY GLU THR GLU VAL LEU GLU VAL SER GLY LEU GLU VAL SEQRES 5 A 537 PRO SER PHE ASN ARG ARG THR ASN LYS ALA GLU LEU LYS SEQRES 6 A 537 ARG VAL LYS ALA LEU ILE ARG HIS ASP TYR SER GLY LYS SEQRES 7 A 537 VAL TYR THR ILE ARG LEU LYS SER GLY ARG ARG ILE LYS SEQRES 8 A 537 ILE THR SER GLY HIS SER LEU PHE SER VAL ARG ASN GLY SEQRES 9 A 537 GLU LEU VAL GLU VAL THR GLY ASP GLU LEU LYS PRO GLY SEQRES 10 A 537 ASP LEU VAL ALA VAL PRO ARG ARG LEU GLU LEU PRO GLU SEQRES 11 A 537 ARG ASN HIS VAL LEU ASN LEU VAL GLU LEU LEU LEU GLY SEQRES 12 A 537 THR PRO GLU GLU GLU THR LEU ASP ILE VAL MSE THR ILE SEQRES 13 A 537 PRO VAL LYS GLY LYS LYS ASN PHE PHE LYS GLY MSE LEU SEQRES 14 A 537 ARG THR LEU ARG TRP ILE PHE GLY GLU GLU LYS ARG PRO SEQRES 15 A 537 ARG THR ALA ARG ARG TYR LEU ARG HIS LEU GLU ASP LEU SEQRES 16 A 537 GLY TYR VAL ARG LEU LYS LYS ILE GLY TYR GLU VAL LEU SEQRES 17 A 537 ASP TRP ASP SER LEU LYS ASN TYR ARG ARG LEU TYR GLU SEQRES 18 A 537 ALA LEU VAL GLU ASN VAL ARG TYR ASN GLY ASN LYS ARG SEQRES 19 A 537 GLU TYR LEU VAL GLU PHE ASN SER ILE ARG ASP ALA VAL SEQRES 20 A 537 GLY ILE MSE PRO LEU LYS GLU LEU LYS GLU TRP LYS ILE SEQRES 21 A 537 GLY THR LEU ASN GLY PHE ARG MSE ARG LYS LEU ILE GLU SEQRES 22 A 537 VAL ASP GLU SER LEU ALA LYS LEU LEU GLY TYR TYR VAL SEQRES 23 A 537 SER GLU GLY TYR ALA ARG LYS GLN ARG ASN PRO LYS ASN SEQRES 24 A 537 GLY TRP SER TYR SER VAL LYS LEU TYR ASN GLU ASP PRO SEQRES 25 A 537 GLU VAL LEU ASP ASP MSE GLU ARG LEU ALA SER ARG PHE SEQRES 26 A 537 PHE GLY LYS VAL ARG ARG GLY ARG ASN TYR VAL GLU ILE SEQRES 27 A 537 PRO LYS LYS ILE GLY TYR LEU LEU PHE GLU ASN MSE CYS SEQRES 28 A 537 GLY VAL LEU ALA GLU ASN LYS ARG ILE PRO GLU PHE VAL SEQRES 29 A 537 PHE THR SER PRO LYS GLY VAL ARG LEU ALA PHE LEU GLU SEQRES 30 A 537 GLY TYR PHE ILE GLY ASP GLY ASP VAL HIS PRO ASN LYS SEQRES 31 A 537 ARG LEU ARG LEU SER THR LYS SER GLU LEU LEU ALA ASN SEQRES 32 A 537 GLN LEU VAL LEU LEU LEU ASN SER VAL GLY VAL SER ALA SEQRES 33 A 537 VAL LYS LEU GLY HIS ASP SER GLY VAL TYR ARG VAL TYR SEQRES 34 A 537 ILE ASN GLU GLU LEU PRO PHE VAL LYS LEU ASP LYS LYS SEQRES 35 A 537 LYS ASN ALA TYR TYR SER HIS VAL ILE PRO LYS GLU VAL SEQRES 36 A 537 LEU SER GLU VAL PHE GLY LYS VAL PHE GLN LYS ASN VAL SEQRES 37 A 537 SER PRO GLN THR PHE ARG LYS MSE VAL GLU ASP GLY ARG SEQRES 38 A 537 LEU ASP PRO GLU LYS ALA GLN ARG LEU SER TRP LEU ILE SEQRES 39 A 537 GLU GLY ASP VAL VAL LEU ASP ARG VAL GLU SER VAL ASP SEQRES 40 A 537 VAL GLU ASP TYR ASP GLY TYR VAL TYR ASP LEU SER VAL SEQRES 41 A 537 GLU ASP ASN GLU ASN PHE LEU VAL GLY PHE GLY LEU VAL SEQRES 42 A 537 TYR ALA HIS ASN MODRES 2CW8 MSE A 28 MET SELENOMETHIONINE MODRES 2CW8 MSE A 29 MET SELENOMETHIONINE MODRES 2CW8 MSE A 154 MET SELENOMETHIONINE MODRES 2CW8 MSE A 168 MET SELENOMETHIONINE MODRES 2CW8 MSE A 250 MET SELENOMETHIONINE MODRES 2CW8 MSE A 268 MET SELENOMETHIONINE MODRES 2CW8 MSE A 318 MET SELENOMETHIONINE MODRES 2CW8 MSE A 350 MET SELENOMETHIONINE MODRES 2CW8 MSE A 476 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 29 8 HET MSE A 154 8 HET MSE A 168 8 HET MSE A 250 8 HET MSE A 268 8 HET MSE A 318 8 HET MSE A 350 8 HET MSE A 476 8 HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET SO4 A1004 5 HET SO4 A1005 5 HET SO4 A1006 5 HET SO4 A1007 5 HET SO4 A1008 5 HET GOL A2001 6 HET GOL A2002 6 HET GOL A2003 6 HET GOL A2006 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 SO4 8(O4 S 2-) FORMUL 10 GOL 4(C3 H8 O3) FORMUL 14 HOH *279(H2 O) HELIX 1 1 ILE A 21 GLU A 31 1 11 HELIX 2 2 ASN A 32 VAL A 36 5 5 HELIX 3 3 LEU A 137 GLY A 143 1 7 HELIX 4 4 THR A 144 THR A 149 5 6 HELIX 5 5 ASN A 163 PHE A 176 1 14 HELIX 6 6 THR A 184 GLY A 196 1 13 HELIX 7 7 ASP A 209 VAL A 227 1 19 HELIX 8 8 GLU A 239 SER A 242 5 4 HELIX 9 9 ILE A 243 GLY A 248 1 6 HELIX 10 10 PRO A 251 LYS A 256 1 6 HELIX 11 11 ASP A 275 GLU A 288 1 14 HELIX 12 12 ASP A 311 GLY A 327 1 17 HELIX 13 13 LYS A 340 GLY A 352 1 13 HELIX 14 14 LEU A 354 LYS A 358 5 5 HELIX 15 15 PRO A 361 PHE A 365 5 5 HELIX 16 16 PRO A 368 GLY A 384 1 17 HELIX 17 17 SER A 398 VAL A 412 1 15 HELIX 18 18 TYR A 446 VAL A 450 5 5 HELIX 19 19 PRO A 452 GLY A 461 1 10 HELIX 20 20 SER A 469 ASP A 479 1 11 HELIX 21 21 ASP A 483 GLN A 488 1 6 HELIX 22 22 LEU A 490 GLY A 496 1 7 SHEET 1 A 5 GLU A 15 ARG A 20 0 SHEET 2 A 5 TRP A 7 GLU A 12 -1 N VAL A 10 O HIS A 17 SHEET 3 A 5 LEU A 50 PHE A 55 -1 O GLU A 51 N LEU A 11 SHEET 4 A 5 ALA A 62 LEU A 84 -1 O GLU A 63 N SER A 54 SHEET 5 A 5 ARG A 89 THR A 93 -1 O ILE A 90 N ILE A 82 SHEET 1 B 5 LYS A 37 GLU A 39 0 SHEET 2 B 5 THR A 42 GLU A 46 -1 O VAL A 44 N LYS A 37 SHEET 3 B 5 ALA A 62 LEU A 84 -1 O LEU A 70 N LEU A 45 SHEET 4 B 5 VAL A 498 VAL A 520 -1 O GLY A 513 N TYR A 75 SHEET 5 B 5 LEU A 119 PRO A 123 -1 N VAL A 120 O ASP A 501 SHEET 1 C 2 SER A 97 ARG A 102 0 SHEET 2 C 2 GLU A 105 THR A 110 -1 O VAL A 109 N LEU A 98 SHEET 1 D 2 VAL A 134 ASN A 136 0 SHEET 2 D 2 LEU A 271 GLU A 273 -1 O ILE A 272 N LEU A 135 SHEET 1 E 5 ARG A 228 TYR A 229 0 SHEET 2 E 5 GLU A 235 LEU A 237 -1 O LEU A 237 N ARG A 228 SHEET 3 E 5 VAL A 153 PRO A 157 -1 N ILE A 156 O TYR A 236 SHEET 4 E 5 LYS A 259 GLY A 261 -1 O GLY A 261 N VAL A 153 SHEET 5 E 5 ARG A 267 ARG A 269 -1 O MSE A 268 N ILE A 260 SHEET 1 F 2 VAL A 198 LEU A 200 0 SHEET 2 F 2 TYR A 205 VAL A 207 -1 O GLU A 206 N ARG A 199 SHEET 1 G 4 GLY A 289 GLN A 294 0 SHEET 2 G 4 SER A 302 TYR A 308 -1 O SER A 304 N ARG A 292 SHEET 3 G 4 TYR A 335 ILE A 338 -1 O ILE A 338 N VAL A 305 SHEET 4 G 4 ARG A 330 ARG A 331 -1 N ARG A 330 O GLU A 337 SHEET 1 H 3 LEU A 392 THR A 396 0 SHEET 2 H 3 TYR A 426 ILE A 430 -1 O TYR A 426 N THR A 396 SHEET 3 H 3 VAL A 417 HIS A 421 -1 N GLY A 420 O ARG A 427 SHEET 1 I 2 ASN A 525 VAL A 528 0 SHEET 2 I 2 VAL A 533 HIS A 536 -1 O ALA A 535 N PHE A 526 LINK C ARG A 27 N MSE A 28 1555 1555 1.33 LINK C MSE A 28 N MSE A 29 1555 1555 1.33 LINK C MSE A 29 N GLU A 30 1555 1555 1.33 LINK C VAL A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N THR A 155 1555 1555 1.33 LINK C GLY A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N LEU A 169 1555 1555 1.33 LINK C ILE A 249 N MSE A 250 1555 1555 1.33 LINK C MSE A 250 N PRO A 251 1555 1555 1.34 LINK C ARG A 267 N MSE A 268 1555 1555 1.33 LINK C MSE A 268 N ARG A 269 1555 1555 1.32 LINK C ASP A 317 N MSE A 318 1555 1555 1.33 LINK C MSE A 318 N GLU A 319 1555 1555 1.33 LINK C ASN A 349 N MSE A 350 1555 1555 1.32 LINK C MSE A 350 N CYS A 351 1555 1555 1.33 LINK C LYS A 475 N MSE A 476 1555 1555 1.33 LINK C MSE A 476 N VAL A 477 1555 1555 1.33 SITE 1 AC1 6 TYR A 75 THR A 93 SER A 94 GLY A 95 SITE 2 AC1 6 HOH A2085 HOH A2203 SITE 1 AC2 3 ASN A 56 ARG A 58 HOH A2247 SITE 1 AC3 4 LYS A 161 PHE A 164 ARG A 187 HIS A 191 SITE 1 AC4 3 ARG A 186 ARG A 190 LEU A 200 SITE 1 AC5 7 THR A 262 GLY A 265 PHE A 266 PRO A 339 SITE 2 AC5 7 LYS A 340 LYS A 341 HOH A2159 SITE 1 AC6 6 LYS A 441 HIS A 449 SER A 469 PRO A 470 SITE 2 AC6 6 GLN A 471 HOH A2193 SITE 1 AC7 7 LYS A 418 TYR A 429 HOH A2039 HOH A2246 SITE 2 AC7 7 HOH A2252 HOH A2253 HOH A2256 SITE 1 AC8 3 ARG A 83 ARG A 89 HOH A2233 SITE 1 AC9 8 ILE A 156 LYS A 161 PHE A 164 HIS A 191 SITE 2 AC9 8 TYR A 220 GLU A 254 GLU A 257 TRP A 258 SITE 1 BC1 7 VAL A 134 ASN A 136 LEU A 140 ASP A 211 SITE 2 BC1 7 HOH A2104 HOH A2164 HOH A2217 SITE 1 BC2 7 ASN A 136 LEU A 208 ASP A 209 TRP A 210 SITE 2 BC2 7 ASP A 211 LEU A 252 HOH A2164 SITE 1 BC3 6 THR A 144 PRO A 145 GLU A 146 HOH A2079 SITE 2 BC3 6 HOH A2208 HOH A2209 CRYST1 103.970 150.540 145.490 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006643 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006873 0.00000