data_2CW9 # _entry.id 2CW9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2CW9 RCSB RCSB024695 WWPDB D_1000024695 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001002567.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2CW9 _pdbx_database_status.recvd_initial_deposition_date 2005-06-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Handa, N.' 1 'Kishishita, S.' 2 'Morita, S.' 3 'Kinoshita, Y.' 4 'Nagano, Y.' 5 'Uda, H.' 6 'Terada, T.' 7 'Uchikubo, T.' 8 'Takemoto, C.' 9 'Jin, Z.' 10 'Chrzas, J.' 11 'Chen, L.' 12 'Liu, Z.-J.' 13 'Wang, B.-C.' 14 'Shirouzu, M.' 15 'Yokoyama, S.' 16 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 17 # _citation.id primary _citation.title 'Structure of the human Tim44 C-terminal domain in complex with pentaethylene glycol: ligand-bound form.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 63 _citation.page_first 1225 _citation.page_last 1234 _citation.year 2007 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 18084070 _citation.pdbx_database_id_DOI 10.1107/S0907444907051463 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Handa, N.' 1 primary 'Kishishita, S.' 2 primary 'Morita, S.' 3 primary 'Akasaka, R.' 4 primary 'Jin, Z.' 5 primary 'Chrzas, J.' 6 primary 'Chen, L.' 7 primary 'Liu, Z.J.' 8 primary 'Wang, B.C.' 9 primary 'Sugano, S.' 10 primary 'Tanaka, A.' 11 primary 'Terada, T.' 12 primary 'Shirouzu, M.' 13 primary 'Yokoyama, S.' 14 # _cell.entry_id 2CW9 _cell.length_a 108.119 _cell.length_b 108.119 _cell.length_c 114.056 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2CW9 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'translocase of inner mitochondrial membrane' 21935.025 1 ? ? 'C-TERMINAL DOMAIN' ? 2 non-polymer syn 'PENTAETHYLENE GLYCOL' 238.278 2 ? ? ? ? 3 water nat water 18.015 151 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGDESDNAFIRASRALTDKVTDLLGGLFSKTE(MSE)SEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEA (MSE)ISGELDILKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLA(MSE)GK(MSE)VEQGPVLIITFQAQLV (MSE)VVRNPKGEVVEGDPDKVLR(MSE)LYVWALCRDQDELNPYAAWRLLDISASSTEQIL ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDI LKDWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLR MLYVWALCRDQDELNPYAAWRLLDISASSTEQIL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001002567.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASP n 1 9 GLU n 1 10 SER n 1 11 ASP n 1 12 ASN n 1 13 ALA n 1 14 PHE n 1 15 ILE n 1 16 ARG n 1 17 ALA n 1 18 SER n 1 19 ARG n 1 20 ALA n 1 21 LEU n 1 22 THR n 1 23 ASP n 1 24 LYS n 1 25 VAL n 1 26 THR n 1 27 ASP n 1 28 LEU n 1 29 LEU n 1 30 GLY n 1 31 GLY n 1 32 LEU n 1 33 PHE n 1 34 SER n 1 35 LYS n 1 36 THR n 1 37 GLU n 1 38 MSE n 1 39 SER n 1 40 GLU n 1 41 VAL n 1 42 LEU n 1 43 THR n 1 44 GLU n 1 45 ILE n 1 46 LEU n 1 47 ARG n 1 48 VAL n 1 49 ASP n 1 50 PRO n 1 51 ALA n 1 52 PHE n 1 53 ASP n 1 54 LYS n 1 55 ASP n 1 56 ARG n 1 57 PHE n 1 58 LEU n 1 59 LYS n 1 60 GLN n 1 61 CYS n 1 62 GLU n 1 63 ASN n 1 64 ASP n 1 65 ILE n 1 66 ILE n 1 67 PRO n 1 68 ASN n 1 69 VAL n 1 70 LEU n 1 71 GLU n 1 72 ALA n 1 73 MSE n 1 74 ILE n 1 75 SER n 1 76 GLY n 1 77 GLU n 1 78 LEU n 1 79 ASP n 1 80 ILE n 1 81 LEU n 1 82 LYS n 1 83 ASP n 1 84 TRP n 1 85 CYS n 1 86 TYR n 1 87 GLU n 1 88 ALA n 1 89 THR n 1 90 TYR n 1 91 SER n 1 92 GLN n 1 93 LEU n 1 94 ALA n 1 95 HIS n 1 96 PRO n 1 97 ILE n 1 98 GLN n 1 99 GLN n 1 100 ALA n 1 101 LYS n 1 102 ALA n 1 103 LEU n 1 104 GLY n 1 105 LEU n 1 106 GLN n 1 107 PHE n 1 108 HIS n 1 109 SER n 1 110 ARG n 1 111 ILE n 1 112 LEU n 1 113 ASP n 1 114 ILE n 1 115 ASP n 1 116 ASN n 1 117 VAL n 1 118 ASP n 1 119 LEU n 1 120 ALA n 1 121 MSE n 1 122 GLY n 1 123 LYS n 1 124 MSE n 1 125 VAL n 1 126 GLU n 1 127 GLN n 1 128 GLY n 1 129 PRO n 1 130 VAL n 1 131 LEU n 1 132 ILE n 1 133 ILE n 1 134 THR n 1 135 PHE n 1 136 GLN n 1 137 ALA n 1 138 GLN n 1 139 LEU n 1 140 VAL n 1 141 MSE n 1 142 VAL n 1 143 VAL n 1 144 ARG n 1 145 ASN n 1 146 PRO n 1 147 LYS n 1 148 GLY n 1 149 GLU n 1 150 VAL n 1 151 VAL n 1 152 GLU n 1 153 GLY n 1 154 ASP n 1 155 PRO n 1 156 ASP n 1 157 LYS n 1 158 VAL n 1 159 LEU n 1 160 ARG n 1 161 MSE n 1 162 LEU n 1 163 TYR n 1 164 VAL n 1 165 TRP n 1 166 ALA n 1 167 LEU n 1 168 CYS n 1 169 ARG n 1 170 ASP n 1 171 GLN n 1 172 ASP n 1 173 GLU n 1 174 LEU n 1 175 ASN n 1 176 PRO n 1 177 TYR n 1 178 ALA n 1 179 ALA n 1 180 TRP n 1 181 ARG n 1 182 LEU n 1 183 LEU n 1 184 ASP n 1 185 ILE n 1 186 SER n 1 187 ALA n 1 188 SER n 1 189 SER n 1 190 THR n 1 191 GLU n 1 192 GLN n 1 193 ILE n 1 194 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell free' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TIM44_HUMAN _struct_ref.pdbx_db_accession O43615 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILKDWCYE ATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRMLYVWAL CRDQDELNPYAAWRLLDISASSTEQIL ; _struct_ref.pdbx_align_begin 266 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2CW9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 194 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O43615 _struct_ref_seq.db_align_beg 266 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 452 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 266 _struct_ref_seq.pdbx_auth_seq_align_end 452 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2CW9 GLY A 1 ? UNP O43615 ? ? 'EXPRESSION TAG' 259 1 1 2CW9 SER A 2 ? UNP O43615 ? ? 'EXPRESSION TAG' 260 2 1 2CW9 SER A 3 ? UNP O43615 ? ? 'EXPRESSION TAG' 261 3 1 2CW9 GLY A 4 ? UNP O43615 ? ? 'EXPRESSION TAG' 262 4 1 2CW9 SER A 5 ? UNP O43615 ? ? 'EXPRESSION TAG' 263 5 1 2CW9 SER A 6 ? UNP O43615 ? ? 'EXPRESSION TAG' 264 6 1 2CW9 GLY A 7 ? UNP O43615 ? ? 'EXPRESSION TAG' 265 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1PE non-polymer . 'PENTAETHYLENE GLYCOL' PEG400 'C10 H22 O6' 238.278 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2CW9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 4.2 _exptl_crystal.density_percent_sol 70.6 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG400, HEPES, ammonium sulfate, glycerol, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2005-05-23 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol SAD _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9792 # _reflns.entry_id 2CW9 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.9 _reflns.number_obs 31350 _reflns.number_all ? _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_netI_over_sigmaI 25.6 _reflns.B_iso_Wilson_estimate 20.5 _reflns.pdbx_redundancy 8.2 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 1.97 _reflns_shell.percent_possible_all 95.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.313 _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2CW9 _refine.ls_number_reflns_obs 31278 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 2021435.15 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.93 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 99.1 _refine.ls_R_factor_obs 0.218 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.218 _refine.ls_R_factor_R_free 0.221 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1553 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 34.7 _refine.aniso_B[1][1] -0.45 _refine.aniso_B[2][2] -0.45 _refine.aniso_B[3][3] 0.90 _refine.aniso_B[1][2] -0.25 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.364381 _refine.solvent_model_param_bsol 58.40 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2CW9 _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.17 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.23 _refine_analyze.Luzzati_sigma_a_free 0.16 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1441 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.number_atoms_solvent 151 _refine_hist.number_atoms_total 1624 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 19.93 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.65 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.36 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.47 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.81 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 2.02 _refine_ls_shell.number_reflns_R_work 4729 _refine_ls_shell.R_factor_R_work 0.263 _refine_ls_shell.percent_reflns_obs 96.8 _refine_ls_shell.R_factor_R_free 0.256 _refine_ls_shell.R_factor_R_free_error 0.016 _refine_ls_shell.percent_reflns_R_free 4.9 _refine_ls_shell.number_reflns_R_free 244 _refine_ls_shell.number_reflns_obs 244 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param water_rep.top 'X-RAY DIFFRACTION' 3 1pe.param 1pe.top 'X-RAY DIFFRACTION' # _struct.entry_id 2CW9 _struct.title 'Crystal structure of human Tim44 C-terminal domain' _struct.pdbx_descriptor 'translocase of inner mitochondrial membrane' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2CW9 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text ;Structure Genomics, TIM, Structural Genomics, NPPFSA, RIKEN Structural Genomics/Proteomics Initiative, RSGI, NPPSFA, National Project on Protein Structural and Functional Analyses, PROTEIN TRANSPORT ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 12 ? LEU A 29 ? ASN A 270 LEU A 287 1 ? 18 HELX_P HELX_P2 2 PHE A 33 ? ASP A 49 ? PHE A 291 ASP A 307 1 ? 17 HELX_P HELX_P3 3 ASP A 53 ? ASP A 64 ? ASP A 311 ASP A 322 1 ? 12 HELX_P HELX_P4 4 ASP A 64 ? GLY A 76 ? ASP A 322 GLY A 334 1 ? 13 HELX_P HELX_P5 5 GLU A 77 ? CYS A 85 ? GLU A 335 CYS A 343 1 ? 9 HELX_P HELX_P6 6 TYR A 86 ? LEU A 103 ? TYR A 344 LEU A 361 1 ? 18 HELX_P HELX_P7 7 ASN A 175 ? ALA A 178 ? ASN A 433 ALA A 436 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLU 37 C ? ? ? 1_555 A MSE 38 N ? ? A GLU 295 A MSE 296 1_555 ? ? ? ? ? ? ? 1.330 ? covale2 covale ? ? A MSE 38 C ? ? ? 1_555 A SER 39 N ? ? A MSE 296 A SER 297 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A ALA 72 C ? ? ? 1_555 A MSE 73 N ? ? A ALA 330 A MSE 331 1_555 ? ? ? ? ? ? ? 1.330 ? covale4 covale ? ? A MSE 73 C ? ? ? 1_555 A ILE 74 N ? ? A MSE 331 A ILE 332 1_555 ? ? ? ? ? ? ? 1.329 ? covale5 covale ? ? A ALA 120 C ? ? ? 1_555 A MSE 121 N ? ? A ALA 378 A MSE 379 1_555 ? ? ? ? ? ? ? 1.329 ? covale6 covale ? ? A MSE 121 C ? ? ? 1_555 A GLY 122 N ? ? A MSE 379 A GLY 380 1_555 ? ? ? ? ? ? ? 1.330 ? covale7 covale ? ? A LYS 123 C ? ? ? 1_555 A MSE 124 N ? ? A LYS 381 A MSE 382 1_555 ? ? ? ? ? ? ? 1.332 ? covale8 covale ? ? A MSE 124 C ? ? ? 1_555 A VAL 125 N ? ? A MSE 382 A VAL 383 1_555 ? ? ? ? ? ? ? 1.328 ? covale9 covale ? ? A VAL 140 C ? ? ? 1_555 A MSE 141 N ? ? A VAL 398 A MSE 399 1_555 ? ? ? ? ? ? ? 1.330 ? covale10 covale ? ? A MSE 141 C ? ? ? 1_555 A VAL 142 N ? ? A MSE 399 A VAL 400 1_555 ? ? ? ? ? ? ? 1.329 ? covale11 covale ? ? A ARG 160 C ? ? ? 1_555 A MSE 161 N ? ? A ARG 418 A MSE 419 1_555 ? ? ? ? ? ? ? 1.329 ? covale12 covale ? ? A MSE 161 C ? ? ? 1_555 A LEU 162 N ? ? A MSE 419 A LEU 420 1_555 ? ? ? ? ? ? ? 1.331 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 106 ? PHE A 107 ? GLN A 364 PHE A 365 A 2 VAL A 142 ? ARG A 144 ? VAL A 400 ARG A 402 A 3 VAL A 150 ? GLY A 153 ? VAL A 408 GLY A 411 B 1 ARG A 110 ? VAL A 125 ? ARG A 368 VAL A 383 B 2 GLY A 128 ? VAL A 140 ? GLY A 386 VAL A 398 B 3 LEU A 159 ? ARG A 169 ? LEU A 417 ARG A 427 B 4 TRP A 180 ? SER A 189 ? TRP A 438 SER A 447 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 106 ? N GLN A 364 O ARG A 144 ? O ARG A 402 A 2 3 N VAL A 143 ? N VAL A 401 O GLU A 152 ? O GLU A 410 B 1 2 N ASP A 115 ? N ASP A 373 O GLN A 136 ? O GLN A 394 B 2 3 N LEU A 139 ? N LEU A 397 O LEU A 159 ? O LEU A 417 B 3 4 N ALA A 166 ? N ALA A 424 O LEU A 183 ? O LEU A 441 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE 1PE A 1001' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE 1PE A 1002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 HOH D . ? HOH A 6 . ? 1_555 ? 2 AC1 7 HOH D . ? HOH A 54 . ? 1_555 ? 3 AC1 7 HOH D . ? HOH A 61 . ? 1_555 ? 4 AC1 7 MSE A 73 ? MSE A 331 . ? 1_555 ? 5 AC1 7 MSE A 161 ? MSE A 419 . ? 1_555 ? 6 AC1 7 ALA A 187 ? ALA A 445 . ? 1_555 ? 7 AC1 7 1PE C . ? 1PE A 1002 . ? 1_555 ? 8 AC2 8 HOH D . ? HOH A 16 . ? 1_555 ? 9 AC2 8 HOH D . ? HOH A 103 . ? 1_555 ? 10 AC2 8 GLY A 31 ? GLY A 289 . ? 12_555 ? 11 AC2 8 LEU A 32 ? LEU A 290 . ? 12_555 ? 12 AC2 8 SER A 34 ? SER A 292 . ? 12_555 ? 13 AC2 8 PRO A 50 ? PRO A 308 . ? 5_555 ? 14 AC2 8 GLN A 92 ? GLN A 350 . ? 1_555 ? 15 AC2 8 1PE B . ? 1PE A 1001 . ? 1_555 ? # _database_PDB_matrix.entry_id 2CW9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2CW9 _atom_sites.fract_transf_matrix[1][1] 0.009249 _atom_sites.fract_transf_matrix[1][2] 0.005340 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010680 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008768 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 259 ? ? ? A . n A 1 2 SER 2 260 ? ? ? A . n A 1 3 SER 3 261 ? ? ? A . n A 1 4 GLY 4 262 ? ? ? A . n A 1 5 SER 5 263 ? ? ? A . n A 1 6 SER 6 264 ? ? ? A . n A 1 7 GLY 7 265 ? ? ? A . n A 1 8 ASP 8 266 ? ? ? A . n A 1 9 GLU 9 267 ? ? ? A . n A 1 10 SER 10 268 ? ? ? A . n A 1 11 ASP 11 269 ? ? ? A . n A 1 12 ASN 12 270 270 ASN ASN A . n A 1 13 ALA 13 271 271 ALA ALA A . n A 1 14 PHE 14 272 272 PHE PHE A . n A 1 15 ILE 15 273 273 ILE ILE A . n A 1 16 ARG 16 274 274 ARG ARG A . n A 1 17 ALA 17 275 275 ALA ALA A . n A 1 18 SER 18 276 276 SER SER A . n A 1 19 ARG 19 277 277 ARG ARG A . n A 1 20 ALA 20 278 278 ALA ALA A . n A 1 21 LEU 21 279 279 LEU LEU A . n A 1 22 THR 22 280 280 THR THR A . n A 1 23 ASP 23 281 281 ASP ASP A . n A 1 24 LYS 24 282 282 LYS LYS A . n A 1 25 VAL 25 283 283 VAL VAL A . n A 1 26 THR 26 284 284 THR THR A . n A 1 27 ASP 27 285 285 ASP ASP A . n A 1 28 LEU 28 286 286 LEU LEU A . n A 1 29 LEU 29 287 287 LEU LEU A . n A 1 30 GLY 30 288 288 GLY GLY A . n A 1 31 GLY 31 289 289 GLY GLY A . n A 1 32 LEU 32 290 290 LEU LEU A . n A 1 33 PHE 33 291 291 PHE PHE A . n A 1 34 SER 34 292 292 SER SER A . n A 1 35 LYS 35 293 293 LYS LYS A . n A 1 36 THR 36 294 294 THR THR A . n A 1 37 GLU 37 295 295 GLU GLU A . n A 1 38 MSE 38 296 296 MSE MSE A . n A 1 39 SER 39 297 297 SER SER A . n A 1 40 GLU 40 298 298 GLU GLU A . n A 1 41 VAL 41 299 299 VAL VAL A . n A 1 42 LEU 42 300 300 LEU LEU A . n A 1 43 THR 43 301 301 THR THR A . n A 1 44 GLU 44 302 302 GLU GLU A . n A 1 45 ILE 45 303 303 ILE ILE A . n A 1 46 LEU 46 304 304 LEU LEU A . n A 1 47 ARG 47 305 305 ARG ARG A . n A 1 48 VAL 48 306 306 VAL VAL A . n A 1 49 ASP 49 307 307 ASP ASP A . n A 1 50 PRO 50 308 308 PRO PRO A . n A 1 51 ALA 51 309 309 ALA ALA A . n A 1 52 PHE 52 310 310 PHE PHE A . n A 1 53 ASP 53 311 311 ASP ASP A . n A 1 54 LYS 54 312 312 LYS LYS A . n A 1 55 ASP 55 313 313 ASP ASP A . n A 1 56 ARG 56 314 314 ARG ARG A . n A 1 57 PHE 57 315 315 PHE PHE A . n A 1 58 LEU 58 316 316 LEU LEU A . n A 1 59 LYS 59 317 317 LYS LYS A . n A 1 60 GLN 60 318 318 GLN GLN A . n A 1 61 CYS 61 319 319 CYS CYS A . n A 1 62 GLU 62 320 320 GLU GLU A . n A 1 63 ASN 63 321 321 ASN ASN A . n A 1 64 ASP 64 322 322 ASP ASP A . n A 1 65 ILE 65 323 323 ILE ILE A . n A 1 66 ILE 66 324 324 ILE ILE A . n A 1 67 PRO 67 325 325 PRO PRO A . n A 1 68 ASN 68 326 326 ASN ASN A . n A 1 69 VAL 69 327 327 VAL VAL A . n A 1 70 LEU 70 328 328 LEU LEU A . n A 1 71 GLU 71 329 329 GLU GLU A . n A 1 72 ALA 72 330 330 ALA ALA A . n A 1 73 MSE 73 331 331 MSE MSE A . n A 1 74 ILE 74 332 332 ILE ILE A . n A 1 75 SER 75 333 333 SER SER A . n A 1 76 GLY 76 334 334 GLY GLY A . n A 1 77 GLU 77 335 335 GLU GLU A . n A 1 78 LEU 78 336 336 LEU LEU A . n A 1 79 ASP 79 337 337 ASP ASP A . n A 1 80 ILE 80 338 338 ILE ILE A . n A 1 81 LEU 81 339 339 LEU LEU A . n A 1 82 LYS 82 340 340 LYS LYS A . n A 1 83 ASP 83 341 341 ASP ASP A . n A 1 84 TRP 84 342 342 TRP TRP A . n A 1 85 CYS 85 343 343 CYS CYS A . n A 1 86 TYR 86 344 344 TYR TYR A . n A 1 87 GLU 87 345 345 GLU GLU A . n A 1 88 ALA 88 346 346 ALA ALA A . n A 1 89 THR 89 347 347 THR THR A . n A 1 90 TYR 90 348 348 TYR TYR A . n A 1 91 SER 91 349 349 SER SER A . n A 1 92 GLN 92 350 350 GLN GLN A . n A 1 93 LEU 93 351 351 LEU LEU A . n A 1 94 ALA 94 352 352 ALA ALA A . n A 1 95 HIS 95 353 353 HIS HIS A . n A 1 96 PRO 96 354 354 PRO PRO A . n A 1 97 ILE 97 355 355 ILE ILE A . n A 1 98 GLN 98 356 356 GLN GLN A . n A 1 99 GLN 99 357 357 GLN GLN A . n A 1 100 ALA 100 358 358 ALA ALA A . n A 1 101 LYS 101 359 359 LYS LYS A . n A 1 102 ALA 102 360 360 ALA ALA A . n A 1 103 LEU 103 361 361 LEU LEU A . n A 1 104 GLY 104 362 362 GLY GLY A . n A 1 105 LEU 105 363 363 LEU LEU A . n A 1 106 GLN 106 364 364 GLN GLN A . n A 1 107 PHE 107 365 365 PHE PHE A . n A 1 108 HIS 108 366 366 HIS HIS A . n A 1 109 SER 109 367 367 SER SER A . n A 1 110 ARG 110 368 368 ARG ARG A . n A 1 111 ILE 111 369 369 ILE ILE A . n A 1 112 LEU 112 370 370 LEU LEU A . n A 1 113 ASP 113 371 371 ASP ASP A . n A 1 114 ILE 114 372 372 ILE ILE A . n A 1 115 ASP 115 373 373 ASP ASP A . n A 1 116 ASN 116 374 374 ASN ASN A . n A 1 117 VAL 117 375 375 VAL VAL A . n A 1 118 ASP 118 376 376 ASP ASP A . n A 1 119 LEU 119 377 377 LEU LEU A . n A 1 120 ALA 120 378 378 ALA ALA A . n A 1 121 MSE 121 379 379 MSE MSE A . n A 1 122 GLY 122 380 380 GLY GLY A . n A 1 123 LYS 123 381 381 LYS LYS A . n A 1 124 MSE 124 382 382 MSE MSE A . n A 1 125 VAL 125 383 383 VAL VAL A . n A 1 126 GLU 126 384 384 GLU GLU A . n A 1 127 GLN 127 385 385 GLN GLN A . n A 1 128 GLY 128 386 386 GLY GLY A . n A 1 129 PRO 129 387 387 PRO PRO A . n A 1 130 VAL 130 388 388 VAL VAL A . n A 1 131 LEU 131 389 389 LEU LEU A . n A 1 132 ILE 132 390 390 ILE ILE A . n A 1 133 ILE 133 391 391 ILE ILE A . n A 1 134 THR 134 392 392 THR THR A . n A 1 135 PHE 135 393 393 PHE PHE A . n A 1 136 GLN 136 394 394 GLN GLN A . n A 1 137 ALA 137 395 395 ALA ALA A . n A 1 138 GLN 138 396 396 GLN GLN A . n A 1 139 LEU 139 397 397 LEU LEU A . n A 1 140 VAL 140 398 398 VAL VAL A . n A 1 141 MSE 141 399 399 MSE MSE A . n A 1 142 VAL 142 400 400 VAL VAL A . n A 1 143 VAL 143 401 401 VAL VAL A . n A 1 144 ARG 144 402 402 ARG ARG A . n A 1 145 ASN 145 403 403 ASN ASN A . n A 1 146 PRO 146 404 404 PRO PRO A . n A 1 147 LYS 147 405 405 LYS LYS A . n A 1 148 GLY 148 406 406 GLY GLY A . n A 1 149 GLU 149 407 407 GLU GLU A . n A 1 150 VAL 150 408 408 VAL VAL A . n A 1 151 VAL 151 409 409 VAL VAL A . n A 1 152 GLU 152 410 410 GLU GLU A . n A 1 153 GLY 153 411 411 GLY GLY A . n A 1 154 ASP 154 412 412 ASP ASP A . n A 1 155 PRO 155 413 413 PRO PRO A . n A 1 156 ASP 156 414 414 ASP ASP A . n A 1 157 LYS 157 415 415 LYS LYS A . n A 1 158 VAL 158 416 416 VAL VAL A . n A 1 159 LEU 159 417 417 LEU LEU A . n A 1 160 ARG 160 418 418 ARG ARG A . n A 1 161 MSE 161 419 419 MSE MSE A . n A 1 162 LEU 162 420 420 LEU LEU A . n A 1 163 TYR 163 421 421 TYR TYR A . n A 1 164 VAL 164 422 422 VAL VAL A . n A 1 165 TRP 165 423 423 TRP TRP A . n A 1 166 ALA 166 424 424 ALA ALA A . n A 1 167 LEU 167 425 425 LEU LEU A . n A 1 168 CYS 168 426 426 CYS CYS A . n A 1 169 ARG 169 427 427 ARG ARG A . n A 1 170 ASP 170 428 428 ASP ASP A . n A 1 171 GLN 171 429 429 GLN GLN A . n A 1 172 ASP 172 430 430 ASP ASP A . n A 1 173 GLU 173 431 431 GLU GLU A . n A 1 174 LEU 174 432 432 LEU LEU A . n A 1 175 ASN 175 433 433 ASN ASN A . n A 1 176 PRO 176 434 434 PRO PRO A . n A 1 177 TYR 177 435 435 TYR TYR A . n A 1 178 ALA 178 436 436 ALA ALA A . n A 1 179 ALA 179 437 437 ALA ALA A . n A 1 180 TRP 180 438 438 TRP TRP A . n A 1 181 ARG 181 439 439 ARG ARG A . n A 1 182 LEU 182 440 440 LEU LEU A . n A 1 183 LEU 183 441 441 LEU LEU A . n A 1 184 ASP 184 442 442 ASP ASP A . n A 1 185 ILE 185 443 443 ILE ILE A . n A 1 186 SER 186 444 444 SER SER A . n A 1 187 ALA 187 445 445 ALA ALA A . n A 1 188 SER 188 446 446 SER SER A . n A 1 189 SER 189 447 447 SER SER A . n A 1 190 THR 190 448 448 THR THR A . n A 1 191 GLU 191 449 449 GLU GLU A . n A 1 192 GLN 192 450 450 GLN GLN A . n A 1 193 ILE 193 451 451 ILE ILE A . n A 1 194 LEU 194 452 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1PE 1 1001 1 1PE 1PE A . C 2 1PE 1 1002 2 1PE 1PE A . D 3 HOH 1 1 1 HOH TIP A . D 3 HOH 2 2 2 HOH TIP A . D 3 HOH 3 3 3 HOH TIP A . D 3 HOH 4 4 4 HOH TIP A . D 3 HOH 5 5 5 HOH TIP A . D 3 HOH 6 6 6 HOH TIP A . D 3 HOH 7 7 7 HOH TIP A . D 3 HOH 8 8 8 HOH TIP A . D 3 HOH 9 9 9 HOH TIP A . D 3 HOH 10 10 10 HOH TIP A . D 3 HOH 11 11 11 HOH TIP A . D 3 HOH 12 12 12 HOH TIP A . D 3 HOH 13 13 13 HOH TIP A . D 3 HOH 14 14 14 HOH TIP A . D 3 HOH 15 15 15 HOH TIP A . D 3 HOH 16 16 16 HOH TIP A . D 3 HOH 17 17 17 HOH TIP A . D 3 HOH 18 18 18 HOH TIP A . D 3 HOH 19 19 19 HOH TIP A . D 3 HOH 20 20 20 HOH TIP A . D 3 HOH 21 21 21 HOH TIP A . D 3 HOH 22 22 22 HOH TIP A . D 3 HOH 23 23 23 HOH TIP A . D 3 HOH 24 24 24 HOH TIP A . D 3 HOH 25 25 25 HOH TIP A . D 3 HOH 26 26 26 HOH TIP A . D 3 HOH 27 27 27 HOH TIP A . D 3 HOH 28 28 28 HOH TIP A . D 3 HOH 29 29 29 HOH TIP A . D 3 HOH 30 30 30 HOH TIP A . D 3 HOH 31 31 31 HOH TIP A . D 3 HOH 32 32 32 HOH TIP A . D 3 HOH 33 33 33 HOH TIP A . D 3 HOH 34 34 34 HOH TIP A . D 3 HOH 35 35 35 HOH TIP A . D 3 HOH 36 36 36 HOH TIP A . D 3 HOH 37 37 37 HOH TIP A . D 3 HOH 38 38 38 HOH TIP A . D 3 HOH 39 39 39 HOH TIP A . D 3 HOH 40 40 40 HOH TIP A . D 3 HOH 41 41 41 HOH TIP A . D 3 HOH 42 42 42 HOH TIP A . D 3 HOH 43 43 43 HOH TIP A . D 3 HOH 44 44 44 HOH TIP A . D 3 HOH 45 45 45 HOH TIP A . D 3 HOH 46 46 46 HOH TIP A . D 3 HOH 47 47 47 HOH TIP A . D 3 HOH 48 48 48 HOH TIP A . D 3 HOH 49 49 49 HOH TIP A . D 3 HOH 50 50 50 HOH TIP A . D 3 HOH 51 51 51 HOH TIP A . D 3 HOH 52 52 52 HOH TIP A . D 3 HOH 53 53 53 HOH TIP A . D 3 HOH 54 54 54 HOH TIP A . D 3 HOH 55 55 55 HOH TIP A . D 3 HOH 56 56 56 HOH TIP A . D 3 HOH 57 57 57 HOH TIP A . D 3 HOH 58 58 58 HOH TIP A . D 3 HOH 59 59 59 HOH TIP A . D 3 HOH 60 60 60 HOH TIP A . D 3 HOH 61 61 61 HOH TIP A . D 3 HOH 62 62 62 HOH TIP A . D 3 HOH 63 63 63 HOH TIP A . D 3 HOH 64 64 64 HOH TIP A . D 3 HOH 65 65 65 HOH TIP A . D 3 HOH 66 66 66 HOH TIP A . D 3 HOH 67 67 67 HOH TIP A . D 3 HOH 68 68 68 HOH TIP A . D 3 HOH 69 69 69 HOH TIP A . D 3 HOH 70 70 70 HOH TIP A . D 3 HOH 71 71 71 HOH TIP A . D 3 HOH 72 72 72 HOH TIP A . D 3 HOH 73 73 73 HOH TIP A . D 3 HOH 74 74 74 HOH TIP A . D 3 HOH 75 75 75 HOH TIP A . D 3 HOH 76 76 76 HOH TIP A . D 3 HOH 77 77 77 HOH TIP A . D 3 HOH 78 78 78 HOH TIP A . D 3 HOH 79 79 79 HOH TIP A . D 3 HOH 80 80 80 HOH TIP A . D 3 HOH 81 81 81 HOH TIP A . D 3 HOH 82 82 82 HOH TIP A . D 3 HOH 83 83 83 HOH TIP A . D 3 HOH 84 84 84 HOH TIP A . D 3 HOH 85 85 85 HOH TIP A . D 3 HOH 86 86 86 HOH TIP A . D 3 HOH 87 87 87 HOH TIP A . D 3 HOH 88 88 88 HOH TIP A . D 3 HOH 89 89 89 HOH TIP A . D 3 HOH 90 90 90 HOH TIP A . D 3 HOH 91 91 91 HOH TIP A . D 3 HOH 92 92 92 HOH TIP A . D 3 HOH 93 93 93 HOH TIP A . D 3 HOH 94 94 94 HOH TIP A . D 3 HOH 95 95 95 HOH TIP A . D 3 HOH 96 96 96 HOH TIP A . D 3 HOH 97 97 97 HOH TIP A . D 3 HOH 98 98 98 HOH TIP A . D 3 HOH 99 99 99 HOH TIP A . D 3 HOH 100 100 100 HOH TIP A . D 3 HOH 101 101 101 HOH TIP A . D 3 HOH 102 102 102 HOH TIP A . D 3 HOH 103 103 103 HOH TIP A . D 3 HOH 104 104 104 HOH TIP A . D 3 HOH 105 105 105 HOH TIP A . D 3 HOH 106 106 106 HOH TIP A . D 3 HOH 107 107 107 HOH TIP A . D 3 HOH 108 108 108 HOH TIP A . D 3 HOH 109 109 109 HOH TIP A . D 3 HOH 110 110 110 HOH TIP A . D 3 HOH 111 111 111 HOH TIP A . D 3 HOH 112 112 112 HOH TIP A . D 3 HOH 113 113 113 HOH TIP A . D 3 HOH 114 114 114 HOH TIP A . D 3 HOH 115 115 115 HOH TIP A . D 3 HOH 116 116 116 HOH TIP A . D 3 HOH 117 117 117 HOH TIP A . D 3 HOH 118 118 118 HOH TIP A . D 3 HOH 119 119 119 HOH TIP A . D 3 HOH 120 120 120 HOH TIP A . D 3 HOH 121 121 121 HOH TIP A . D 3 HOH 122 122 122 HOH TIP A . D 3 HOH 123 123 123 HOH TIP A . D 3 HOH 124 124 124 HOH TIP A . D 3 HOH 125 125 125 HOH TIP A . D 3 HOH 126 126 126 HOH TIP A . D 3 HOH 127 127 127 HOH TIP A . D 3 HOH 128 128 128 HOH TIP A . D 3 HOH 129 129 129 HOH TIP A . D 3 HOH 130 130 130 HOH TIP A . D 3 HOH 131 131 131 HOH TIP A . D 3 HOH 132 132 132 HOH TIP A . D 3 HOH 133 133 133 HOH TIP A . D 3 HOH 134 134 134 HOH TIP A . D 3 HOH 135 135 135 HOH TIP A . D 3 HOH 136 136 136 HOH TIP A . D 3 HOH 137 137 137 HOH TIP A . D 3 HOH 138 138 138 HOH TIP A . D 3 HOH 139 139 139 HOH TIP A . D 3 HOH 140 140 140 HOH TIP A . D 3 HOH 141 141 141 HOH TIP A . D 3 HOH 142 142 142 HOH TIP A . D 3 HOH 143 143 143 HOH TIP A . D 3 HOH 144 144 144 HOH TIP A . D 3 HOH 145 145 145 HOH TIP A . D 3 HOH 146 147 147 HOH TIP A . D 3 HOH 147 148 148 HOH TIP A . D 3 HOH 148 149 149 HOH TIP A . D 3 HOH 149 150 150 HOH TIP A . D 3 HOH 150 151 151 HOH TIP A . D 3 HOH 151 152 152 HOH TIP A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 38 A MSE 296 ? MET SELENOMETHIONINE 2 A MSE 73 A MSE 331 ? MET SELENOMETHIONINE 3 A MSE 121 A MSE 379 ? MET SELENOMETHIONINE 4 A MSE 124 A MSE 382 ? MET SELENOMETHIONINE 5 A MSE 141 A MSE 399 ? MET SELENOMETHIONINE 6 A MSE 161 A MSE 419 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 1 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id D _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-12-17 2 'Structure model' 1 1 2007-10-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 322 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -131.10 _pdbx_validate_torsion.psi -63.90 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 259 ? A GLY 1 2 1 Y 1 A SER 260 ? A SER 2 3 1 Y 1 A SER 261 ? A SER 3 4 1 Y 1 A GLY 262 ? A GLY 4 5 1 Y 1 A SER 263 ? A SER 5 6 1 Y 1 A SER 264 ? A SER 6 7 1 Y 1 A GLY 265 ? A GLY 7 8 1 Y 1 A ASP 266 ? A ASP 8 9 1 Y 1 A GLU 267 ? A GLU 9 10 1 Y 1 A SER 268 ? A SER 10 11 1 Y 1 A ASP 269 ? A ASP 11 12 1 Y 1 A LEU 452 ? A LEU 194 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PENTAETHYLENE GLYCOL' 1PE 3 water HOH #