HEADER HYDROLASE 06-JUL-05 2CY9 TITLE CRYSTAL STRUCTURE OF THIOESTERASE SUPERFAMILY MEMBER2 FROM TITLE 2 MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOESTERASE SUPERFAMILY MEMBER 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MS0341; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PX040902-05; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, THIOESTERASE SUPERFAMILY MEMBER 2, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,K.MURAYAMA,S.KISHISHITA,M.SHIROUZU,S.YOKOYAMA, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2CY9 1 VERSN REVDAT 1 06-JAN-06 2CY9 0 JRNL AUTH T.HOSAKA,K.MURAYAMA,S.KISHISHITA,M.SHIROUZU, JRNL AUTH 2 S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THIOESTERASE SUPERFAMILY JRNL TITL 2 MEMBER2 FROM MUS MUSCULUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 7819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 383 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 396 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 25 REMARK 3 BIN FREE R VALUE : 0.5090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1916 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.47000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : 0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.45000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.370 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.284 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.693 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1941 ; 0.078 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1857 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2605 ; 4.788 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4350 ; 1.989 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ;12.329 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.306 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2062 ; 0.020 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 318 ; 0.015 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 556 ; 0.334 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2501 ; 0.327 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1253 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 60 ; 0.234 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 30 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 99 ; 0.339 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1262 ; 2.952 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2036 ; 5.192 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 679 ; 6.963 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 569 ;10.815 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2CY9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB024762. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922, 0.97957, 0.964 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9667 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.0 REMARK 200 DATA REDUNDANCY : 2.790 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 8.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 23.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.24000 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, 2.0 M AMMONIUM REMARK 280 SULPHATE, PH 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 33.26100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.09750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 33.26100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.09750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THIS CRYSTAL PACKING, IT LOOKS LIKE DIMER. BUT THERE REMARK 300 IS NO EXPERIMENTAL EVIDENCE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 MSE A 4 REMARK 465 THR A 5 REMARK 465 GLN A 6 REMARK 465 ASN A 7 REMARK 465 LEU A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 10 REMARK 465 VAL A 11 REMARK 465 MSE A 12 REMARK 465 ARG A 23 REMARK 465 GLU A 76 REMARK 465 ARG A 77 REMARK 465 GLY A 78 REMARK 465 ALA A 79 REMARK 465 ASN A 140 REMARK 465 LYS B 17 REMARK 465 VAL B 18 REMARK 465 PRO B 19 REMARK 465 ARG B 77 REMARK 465 GLY B 78 REMARK 465 ALA B 79 REMARK 465 ASN B 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 141 O HOH A 150 1.76 REMARK 500 O PHE A 16 CG2 VAL A 18 1.78 REMARK 500 O VAL A 28 NZ LYS A 43 2.04 REMARK 500 O LYS A 13 CE MSE A 15 2.12 REMARK 500 OD1 ASN A 50 O THR A 54 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 13 N LYS A 13 CA 0.139 REMARK 500 VAL A 14 CA VAL A 14 CB 0.128 REMARK 500 VAL A 14 CB VAL A 14 CG1 0.197 REMARK 500 VAL A 14 CB VAL A 14 CG2 0.152 REMARK 500 PHE A 16 CB PHE A 16 CG 0.127 REMARK 500 PHE A 16 CG PHE A 16 CD2 0.090 REMARK 500 PHE A 16 CG PHE A 16 CD1 0.096 REMARK 500 PHE A 16 CD1 PHE A 16 CE1 0.136 REMARK 500 PHE A 16 CE1 PHE A 16 CZ 0.132 REMARK 500 PHE A 16 CZ PHE A 16 CE2 0.117 REMARK 500 PHE A 16 CE2 PHE A 16 CD2 0.188 REMARK 500 LYS A 17 CD LYS A 17 CE 0.170 REMARK 500 PHE A 21 CG PHE A 21 CD2 0.103 REMARK 500 PHE A 21 CG PHE A 21 CD1 0.099 REMARK 500 PHE A 21 CE1 PHE A 21 CZ 0.175 REMARK 500 VAL A 24 N VAL A 24 CA 0.216 REMARK 500 VAL A 24 CB VAL A 24 CG1 0.218 REMARK 500 VAL A 24 CB VAL A 24 CG2 -0.192 REMARK 500 LEU A 25 C LEU A 25 O 0.165 REMARK 500 GLU A 26 C GLU A 26 O -0.125 REMARK 500 LYS A 27 CB LYS A 27 CG 0.170 REMARK 500 LYS A 27 CD LYS A 27 CE 0.175 REMARK 500 VAL A 28 CB VAL A 28 CG2 0.143 REMARK 500 LEU A 30 CG LEU A 30 CD1 0.232 REMARK 500 VAL A 31 CA VAL A 31 CB 0.234 REMARK 500 VAL A 31 CB VAL A 31 CG2 0.214 REMARK 500 VAL A 31 CA VAL A 31 C 0.178 REMARK 500 SER A 32 CB SER A 32 OG 0.086 REMARK 500 ALA A 33 CA ALA A 33 CB 0.165 REMARK 500 GLU A 36 CA GLU A 36 CB 0.149 REMARK 500 GLU A 36 CB GLU A 36 CG 0.184 REMARK 500 GLU A 36 CG GLU A 36 CD 0.184 REMARK 500 GLU A 36 CD GLU A 36 OE1 0.072 REMARK 500 LYS A 37 CE LYS A 37 NZ 0.170 REMARK 500 ILE A 39 C ILE A 39 O -0.142 REMARK 500 GLU A 41 CG GLU A 41 CD 0.121 REMARK 500 GLU A 41 CD GLU A 41 OE1 0.085 REMARK 500 GLU A 41 C GLU A 41 O -0.118 REMARK 500 VAL A 44 CB VAL A 44 CG1 0.135 REMARK 500 VAL A 44 CB VAL A 44 CG2 -0.132 REMARK 500 GLU A 45 CD GLU A 45 OE2 0.104 REMARK 500 GLN A 47 CD GLN A 47 OE1 0.152 REMARK 500 HIS A 48 C HIS A 48 O -0.150 REMARK 500 ASN A 50 CB ASN A 50 CG 0.158 REMARK 500 LYS A 51 CA LYS A 51 CB 0.133 REMARK 500 LYS A 51 CE LYS A 51 NZ 0.250 REMARK 500 SER A 66 CB SER A 66 OG 0.092 REMARK 500 SER A 68 CB SER A 68 OG 0.081 REMARK 500 THR A 69 CB THR A 69 CG2 -0.227 REMARK 500 PRO A 80 N PRO A 80 CA 0.222 REMARK 500 REMARK 500 THIS ENTRY HAS 169 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 17 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 22 N - CA - C ANGL. DEV. = 23.4 DEGREES REMARK 500 VAL A 24 CA - CB - CG1 ANGL. DEV. = 10.7 DEGREES REMARK 500 GLU A 26 OE1 - CD - OE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LYS A 27 CD - CE - NZ ANGL. DEV. = 17.2 DEGREES REMARK 500 LEU A 30 CB - CG - CD1 ANGL. DEV. = 14.3 DEGREES REMARK 500 VAL A 31 N - CA - C ANGL. DEV. = 19.1 DEGREES REMARK 500 GLU A 41 CG - CD - OE1 ANGL. DEV. = 13.3 DEGREES REMARK 500 LEU A 52 CB - CG - CD1 ANGL. DEV. = -11.0 DEGREES REMARK 500 GLY A 53 C - N - CA ANGL. DEV. = -19.1 DEGREES REMARK 500 THR A 54 OG1 - CB - CG2 ANGL. DEV. = -13.9 DEGREES REMARK 500 HIS A 56 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 LEU A 63 CB - CG - CD2 ANGL. DEV. = -12.4 DEGREES REMARK 500 SER A 66 CA - CB - OG ANGL. DEV. = -26.2 DEGREES REMARK 500 SER A 68 N - CA - C ANGL. DEV. = -21.4 DEGREES REMARK 500 LEU A 72 CB - CG - CD1 ANGL. DEV. = 10.7 DEGREES REMARK 500 ILE A 100 CG1 - CB - CG2 ANGL. DEV. = 15.2 DEGREES REMARK 500 THR A 103 CA - CB - CG2 ANGL. DEV. = -10.3 DEGREES REMARK 500 GLY A 110 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 LEU A 120 CB - CG - CD2 ANGL. DEV. = -10.7 DEGREES REMARK 500 THR A 121 CA - CB - CG2 ANGL. DEV. = -14.4 DEGREES REMARK 500 LEU A 128 CB - CG - CD1 ANGL. DEV. = 10.4 DEGREES REMARK 500 LEU A 128 CB - CG - CD2 ANGL. DEV. = -10.8 DEGREES REMARK 500 SER B 3 C - N - CA ANGL. DEV. = -19.1 DEGREES REMARK 500 PHE B 16 CA - C - O ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG B 23 CA - CB - CG ANGL. DEV. = -13.5 DEGREES REMARK 500 VAL B 28 CG1 - CB - CG2 ANGL. DEV. = -10.0 DEGREES REMARK 500 ASN B 50 CB - CA - C ANGL. DEV. = -13.1 DEGREES REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = 10.2 DEGREES REMARK 500 ILE B 67 CG1 - CB - CG2 ANGL. DEV. = 13.3 DEGREES REMARK 500 GLU B 76 CA - C - O ANGL. DEV. = 15.3 DEGREES REMARK 500 SER B 92 N - CA - CB ANGL. DEV. = -9.1 DEGREES REMARK 500 ASP B 119 CB - CG - OD1 ANGL. DEV. = 8.7 DEGREES REMARK 500 LYS B 123 CD - CE - NZ ANGL. DEV. = -16.8 DEGREES REMARK 500 THR B 125 OG1 - CB - CG2 ANGL. DEV. = -15.5 DEGREES REMARK 500 LEU B 128 CB - CG - CD2 ANGL. DEV. = -12.9 DEGREES REMARK 500 ARG B 133 NH1 - CZ - NH2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = -8.0 DEGREES REMARK 500 LYS B 136 CD - CE - NZ ANGL. DEV. = 18.2 DEGREES REMARK 500 LEU B 138 CB - CG - CD1 ANGL. DEV. = -14.7 DEGREES REMARK 500 LEU B 138 CB - CG - CD2 ANGL. DEV. = 15.0 DEGREES REMARK 500 GLY B 139 CA - C - O ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 17 53.59 31.51 REMARK 500 PRO A 19 85.53 -57.86 REMARK 500 LEU A 25 93.54 174.21 REMARK 500 VAL A 28 22.19 -152.81 REMARK 500 LEU A 30 -117.78 -114.25 REMARK 500 VAL A 31 163.32 173.34 REMARK 500 SER A 32 110.42 -176.73 REMARK 500 ALA A 34 -167.82 -112.02 REMARK 500 GLU A 36 38.95 70.31 REMARK 500 LYS A 37 147.46 -174.80 REMARK 500 LEU A 38 74.38 -170.58 REMARK 500 LYS A 51 -28.83 -24.84 REMARK 500 ALA A 61 -78.62 -50.13 REMARK 500 THR A 62 -32.93 -30.31 REMARK 500 ASP A 65 -76.30 -51.56 REMARK 500 ILE A 67 37.29 83.06 REMARK 500 SER A 68 -65.25 -169.02 REMARK 500 VAL A 84 -63.85 -131.33 REMARK 500 ILE A 129 -67.40 -99.13 REMARK 500 LEU B 25 54.18 -115.83 REMARK 500 LYS B 27 26.57 -76.92 REMARK 500 SER B 32 135.24 -172.90 REMARK 500 GLU B 45 -119.54 -86.09 REMARK 500 GLU B 46 -31.99 -160.66 REMARK 500 ASN B 50 -172.39 -62.16 REMARK 500 VAL B 84 -60.26 -108.76 REMARK 500 GLN B 109 -116.67 -49.79 REMARK 500 ALA B 130 -8.57 -163.28 REMARK 500 GLN B 131 118.08 48.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 14 MSE A 15 -146.23 REMARK 500 PHE A 16 LYS A 17 124.44 REMARK 500 GLY A 57 GLY A 58 147.73 REMARK 500 THR A 125 GLY A 126 -145.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS B 48 -11.19 REMARK 500 PRO B 93 10.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 142 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH A 143 DISTANCE = 10.72 ANGSTROMS REMARK 525 HOH B 144 DISTANCE = 11.35 ANGSTROMS REMARK 525 HOH A 146 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A 147 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A 148 DISTANCE = 5.35 ANGSTROMS REMARK 525 HOH A 149 DISTANCE = 12.49 ANGSTROMS REMARK 525 HOH B 150 DISTANCE = 11.76 ANGSTROMS REMARK 525 HOH A 152 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH B 152 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A 153 DISTANCE = 8.01 ANGSTROMS REMARK 525 HOH A 154 DISTANCE = 5.42 ANGSTROMS REMARK 525 HOH B 154 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 155 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH B 157 DISTANCE = 7.56 ANGSTROMS REMARK 525 HOH A 159 DISTANCE = 12.96 ANGSTROMS REMARK 525 HOH B 159 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH A 160 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 161 DISTANCE = 11.36 ANGSTROMS REMARK 525 HOH A 162 DISTANCE = 7.98 ANGSTROMS REMARK 525 HOH A 163 DISTANCE = 9.66 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007007994.1 RELATED DB: TARGETDB DBREF 2CY9 A 1 140 UNP Q9CQR4 THEM2_MOUSE 1 140 DBREF 2CY9 B 1 140 UNP Q9CQR4 THEM2_MOUSE 1 140 SEQADV 2CY9 MSE A 1 UNP Q9CQR4 MET 1 MODIFIED RESIDUE SEQADV 2CY9 MSE A 4 UNP Q9CQR4 MET 4 MODIFIED RESIDUE SEQADV 2CY9 MSE A 12 UNP Q9CQR4 MET 12 MODIFIED RESIDUE SEQADV 2CY9 MSE A 15 UNP Q9CQR4 MET 15 MODIFIED RESIDUE SEQADV 2CY9 MSE A 42 UNP Q9CQR4 MET 42 MODIFIED RESIDUE SEQADV 2CY9 MSE A 70 UNP Q9CQR4 MET 70 MODIFIED RESIDUE SEQADV 2CY9 MSE A 73 UNP Q9CQR4 MET 73 MODIFIED RESIDUE SEQADV 2CY9 MSE A 86 UNP Q9CQR4 MET 86 MODIFIED RESIDUE SEQADV 2CY9 MSE A 91 UNP Q9CQR4 MET 91 MODIFIED RESIDUE SEQADV 2CY9 MSE B 1 UNP Q9CQR4 MET 1 MODIFIED RESIDUE SEQADV 2CY9 MSE B 4 UNP Q9CQR4 MET 4 MODIFIED RESIDUE SEQADV 2CY9 MSE B 12 UNP Q9CQR4 MET 12 MODIFIED RESIDUE SEQADV 2CY9 MSE B 15 UNP Q9CQR4 MET 15 MODIFIED RESIDUE SEQADV 2CY9 MSE B 42 UNP Q9CQR4 MET 42 MODIFIED RESIDUE SEQADV 2CY9 MSE B 70 UNP Q9CQR4 MET 70 MODIFIED RESIDUE SEQADV 2CY9 MSE B 73 UNP Q9CQR4 MET 73 MODIFIED RESIDUE SEQADV 2CY9 MSE B 86 UNP Q9CQR4 MET 86 MODIFIED RESIDUE SEQADV 2CY9 MSE B 91 UNP Q9CQR4 MET 91 MODIFIED RESIDUE SEQRES 1 A 140 MSE SER SER MSE THR GLN ASN LEU ARG GLU VAL MSE LYS SEQRES 2 A 140 VAL MSE PHE LYS VAL PRO GLY PHE ASP ARG VAL LEU GLU SEQRES 3 A 140 LYS VAL THR LEU VAL SER ALA ALA PRO GLU LYS LEU ILE SEQRES 4 A 140 CYS GLU MSE LYS VAL GLU GLU GLN HIS THR ASN LYS LEU SEQRES 5 A 140 GLY THR LEU HIS GLY GLY LEU THR ALA THR LEU VAL ASP SEQRES 6 A 140 SER ILE SER THR MSE ALA LEU MSE CYS THR GLU ARG GLY SEQRES 7 A 140 ALA PRO GLY VAL SER VAL ASP MSE ASN ILE THR TYR MSE SEQRES 8 A 140 SER PRO ALA LYS ILE GLY GLU GLU ILE VAL ILE THR ALA SEQRES 9 A 140 HIS ILE LEU LYS GLN GLY LYS THR LEU ALA PHE ALA SER SEQRES 10 A 140 VAL ASP LEU THR ASN LYS THR THR GLY LYS LEU ILE ALA SEQRES 11 A 140 GLN GLY ARG HIS THR LYS HIS LEU GLY ASN SEQRES 1 B 140 MSE SER SER MSE THR GLN ASN LEU ARG GLU VAL MSE LYS SEQRES 2 B 140 VAL MSE PHE LYS VAL PRO GLY PHE ASP ARG VAL LEU GLU SEQRES 3 B 140 LYS VAL THR LEU VAL SER ALA ALA PRO GLU LYS LEU ILE SEQRES 4 B 140 CYS GLU MSE LYS VAL GLU GLU GLN HIS THR ASN LYS LEU SEQRES 5 B 140 GLY THR LEU HIS GLY GLY LEU THR ALA THR LEU VAL ASP SEQRES 6 B 140 SER ILE SER THR MSE ALA LEU MSE CYS THR GLU ARG GLY SEQRES 7 B 140 ALA PRO GLY VAL SER VAL ASP MSE ASN ILE THR TYR MSE SEQRES 8 B 140 SER PRO ALA LYS ILE GLY GLU GLU ILE VAL ILE THR ALA SEQRES 9 B 140 HIS ILE LEU LYS GLN GLY LYS THR LEU ALA PHE ALA SER SEQRES 10 B 140 VAL ASP LEU THR ASN LYS THR THR GLY LYS LEU ILE ALA SEQRES 11 B 140 GLN GLY ARG HIS THR LYS HIS LEU GLY ASN MODRES 2CY9 MSE A 15 MET SELENOMETHIONINE MODRES 2CY9 MSE A 42 MET SELENOMETHIONINE MODRES 2CY9 MSE A 70 MET SELENOMETHIONINE MODRES 2CY9 MSE A 73 MET SELENOMETHIONINE MODRES 2CY9 MSE A 86 MET SELENOMETHIONINE MODRES 2CY9 MSE A 91 MET SELENOMETHIONINE MODRES 2CY9 MSE B 1 MET SELENOMETHIONINE MODRES 2CY9 MSE B 4 MET SELENOMETHIONINE MODRES 2CY9 MSE B 12 MET SELENOMETHIONINE MODRES 2CY9 MSE B 15 MET SELENOMETHIONINE MODRES 2CY9 MSE B 42 MET SELENOMETHIONINE MODRES 2CY9 MSE B 70 MET SELENOMETHIONINE MODRES 2CY9 MSE B 73 MET SELENOMETHIONINE MODRES 2CY9 MSE B 86 MET SELENOMETHIONINE MODRES 2CY9 MSE B 91 MET SELENOMETHIONINE HET MSE A 15 8 HET MSE A 42 8 HET MSE A 70 8 HET MSE A 73 8 HET MSE A 86 8 HET MSE A 91 8 HET MSE B 1 8 HET MSE B 4 8 HET MSE B 12 8 HET MSE B 15 8 HET MSE B 42 8 HET MSE B 70 8 HET MSE B 73 8 HET MSE B 86 8 HET MSE B 91 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 3 HOH *43(H2 O) HELIX 1 1 HIS A 56 SER A 66 1 11 HELIX 2 2 THR A 69 MSE A 73 5 5 HELIX 3 3 SER B 3 PHE B 16 1 14 HELIX 4 4 PHE B 21 LEU B 25 5 5 HELIX 5 5 HIS B 56 THR B 75 1 20 SHEET 1 A 6 SER A 32 ALA A 33 0 SHEET 2 A 6 LEU A 38 LYS A 43 -1 O ILE A 39 N SER A 32 SHEET 3 A 6 GLU A 99 THR A 103 -1 O ILE A 100 N MSE A 42 SHEET 4 A 6 LEU A 113 ASN A 122 -1 O ASP A 119 N THR A 103 SHEET 5 A 6 LEU A 128 HIS A 137 -1 O LYS A 136 N ALA A 114 SHEET 6 A 6 VAL A 82 TYR A 90 -1 N ASP A 85 O THR A 135 SHEET 1 B 5 SER A 32 ALA A 33 0 SHEET 2 B 5 LEU A 38 LYS A 43 -1 O ILE A 39 N SER A 32 SHEET 3 B 5 GLU A 99 THR A 103 -1 O ILE A 100 N MSE A 42 SHEET 4 B 5 LEU A 113 ASN A 122 -1 O ASP A 119 N THR A 103 SHEET 5 B 5 ILE A 106 LYS A 108 -1 N LEU A 107 O PHE A 115 SHEET 1 C 6 THR B 29 ALA B 33 0 SHEET 2 C 6 LYS B 37 LYS B 43 -1 O ILE B 39 N SER B 32 SHEET 3 C 6 GLU B 99 LYS B 108 -1 O ILE B 102 N CYS B 40 SHEET 4 C 6 LEU B 113 ASN B 122 -1 O SER B 117 N HIS B 105 SHEET 5 C 6 GLY B 132 HIS B 137 -1 O GLY B 132 N VAL B 118 SHEET 6 C 6 VAL B 82 ILE B 88 -1 N ASN B 87 O ARG B 133 LINK C VAL A 14 N MSE A 15 1555 1555 1.37 LINK C MSE A 15 N PHE A 16 1555 1555 1.34 LINK C GLU A 41 N MSE A 42 1555 1555 1.27 LINK C MSE A 42 N LYS A 43 1555 1555 1.38 LINK C THR A 69 N MSE A 70 1555 1555 1.31 LINK C MSE A 70 N ALA A 71 1555 1555 1.34 LINK C LEU A 72 N MSE A 73 1555 1555 1.31 LINK C MSE A 73 N CYS A 74 1555 1555 1.35 LINK C ASP A 85 N MSE A 86 1555 1555 1.38 LINK C MSE A 86 N ASN A 87 1555 1555 1.31 LINK C TYR A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N SER A 92 1555 1555 1.32 LINK C MSE B 1 N SER B 2 1555 1555 1.30 LINK C SER B 3 N MSE B 4 1555 1555 1.41 LINK C MSE B 4 N THR B 5 1555 1555 1.32 LINK C VAL B 11 N MSE B 12 1555 1555 1.33 LINK C MSE B 12 N LYS B 13 1555 1555 1.39 LINK C VAL B 14 N MSE B 15 1555 1555 1.33 LINK C MSE B 15 N PHE B 16 1555 1555 1.26 LINK C GLU B 41 N MSE B 42 1555 1555 1.27 LINK C MSE B 42 N LYS B 43 1555 1555 1.31 LINK C THR B 69 N MSE B 70 1555 1555 1.36 LINK C MSE B 70 N ALA B 71 1555 1555 1.34 LINK C LEU B 72 N MSE B 73 1555 1555 1.32 LINK C MSE B 73 N CYS B 74 1555 1555 1.35 LINK C ASP B 85 N MSE B 86 1555 1555 1.24 LINK C MSE B 86 N ASN B 87 1555 1555 1.28 LINK C TYR B 90 N MSE B 91 1555 1555 1.33 LINK C MSE B 91 N SER B 92 1555 1555 1.36 CRYST1 66.522 90.195 61.210 90.00 118.32 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015033 0.000000 0.008101 0.00000 SCALE2 0.000000 0.011087 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018558 0.00000