HEADER HYDROLASE 06-JUL-05 2CYE TITLE CRYSTAL STRUCTURE OF THIOESTERASE COMPLEXED WITH COENZYME A TITLE 2 AND ZN FROM THERMUS THERMOPHILUS HB8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOESTERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: TTHA1846; COMPND 5 EC: 3.1.2.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 GENE: TTHA1846; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3)PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11 KEYWDS STRUCTURAL GENOMICS, ESTERASE, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HOSAKA,M.KATO-MURAYAMA,K.MURAYAMA,S.KISHISHITA,N.HANDA, AUTHOR 2 M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 4 05-JAN-10 2CYE 1 COMPND DBREF SEQADV LINK REVDAT 3 29-DEC-09 2CYE 1 JRNL REVDAT 2 24-FEB-09 2CYE 1 VERSN REVDAT 1 06-JAN-06 2CYE 0 JRNL AUTH T.HOSAKA,K.MURAYAMA,M.KATO-MURAYAMA,A.URUSHIBATA, JRNL AUTH 2 R.AKASAKA,T.TERADA,M.SHIROUZU,S.KURAMITSU, JRNL AUTH 3 S.YOKOYAMA JRNL TITL STRUCTURE OF THE PUTATIVE THIOESTERASE PROTEIN JRNL TITL 2 TTHA1846 FROM THERMUS THERMOPHILUS HB8 COMPLEXED JRNL TITL 3 WITH COENZYME A AND A ZINC ION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 65 767 2009 JRNL REFN ISSN 0907-4449 JRNL PMID 19622860 JRNL DOI 10.1107/S0907444909015601 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2182480.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 41903 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 3880 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 12387 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 687 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4142 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 196 REMARK 3 SOLVENT ATOMS : 296 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.33000 REMARK 3 B22 (A**2) : -1.04000 REMARK 3 B33 (A**2) : -2.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.11 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.17 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.03 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.430 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.820 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.260 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 53.28 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : COA13.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : COA13.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2CYE COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB024767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.962, 0.97919, 0.97949 REMARK 200 MONOCHROMATOR : SILICON REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41903 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.942 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 13.3748 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.28600 REMARK 200 FOR SHELL : 4.145 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M ACETATE, 0.8M AMMONIUM REMARK 280 SULPHATE, 3% PEG400, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.76500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.90850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.76500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.90850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: IN THIS CRYSTAL PACKING, IT LOOKS LIKE DIMER. BUT, THERE REMARK 300 IS NO EXPERIMENTAL EVIDENCE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -202.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 44 REMARK 465 PRO A 45 REMARK 465 LEU A 133 REMARK 465 SER B 44 REMARK 465 PRO B 45 REMARK 465 LEU B 133 REMARK 465 MSE D 1 REMARK 465 GLU D 2 REMARK 465 LEU D 128 REMARK 465 GLU D 129 REMARK 465 GLY D 130 REMARK 465 ARG D 131 REMARK 465 PRO D 132 REMARK 465 LEU D 133 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 83 -68.08 -91.06 REMARK 500 ARG B 42 44.28 -78.67 REMARK 500 ASP C 46 49.80 -79.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1031 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1033 DISTANCE = 5.21 ANGSTROMS REMARK 525 HOH A1044 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH A1059 DISTANCE = 7.02 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 18 OD1 REMARK 620 2 GLU C 50 OE2 99.0 REMARK 620 3 COA C 602 S1P 109.1 131.1 REMARK 620 4 HIS A 22 NE2 98.9 108.4 105.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 COA B 601 S1P REMARK 620 2 GLU D 50 OE2 85.4 REMARK 620 3 ASP B 18 OD2 108.9 86.0 REMARK 620 4 HIS B 22 NE2 108.4 157.3 105.6 REMARK 620 5 GLU D 50 OE1 130.8 52.9 94.4 105.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 50 OE1 REMARK 620 2 COA C 603 S1P 88.7 REMARK 620 3 HIS C 22 NE2 159.4 107.1 REMARK 620 4 ASP C 18 OD2 87.0 106.9 100.5 REMARK 620 5 GLU A 50 OE2 53.0 131.9 106.6 99.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 50 OE1 REMARK 620 2 ASP D 18 OD1 85.4 REMARK 620 3 GLU B 50 OE2 54.7 98.7 REMARK 620 4 HIS D 22 NE2 158.7 103.6 104.5 REMARK 620 5 COA B 604 S1P 87.8 106.0 132.9 107.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1003 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 1004 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 601 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C 602 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA C 603 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TTK003001811.1 RELATED DB: TARGETDB DBREF 2CYE A 1 133 UNP Q5SH84 Q5SH84_THET8 1 133 DBREF 2CYE B 1 133 UNP Q5SH84 Q5SH84_THET8 1 133 DBREF 2CYE C 1 133 UNP Q5SH84 Q5SH84_THET8 1 133 DBREF 2CYE D 1 133 UNP Q5SH84 Q5SH84_THET8 1 133 SEQRES 1 A 133 MSE GLU GLY PHE PRO VAL ARG VAL ARG VAL ASP VAL ARG SEQRES 2 A 133 PHE ARG ASP LEU ASP PRO LEU GLY HIS VAL ASN ASN ALA SEQRES 3 A 133 VAL PHE LEU SER TYR MSE GLU LEU ALA ARG ILE ARG TYR SEQRES 4 A 133 PHE GLN ARG ILE SER PRO ASP TRP LEU GLU GLU GLY HIS SEQRES 5 A 133 PHE VAL VAL ALA ARG MSE GLU VAL ASP TYR LEU ARG PRO SEQRES 6 A 133 ILE LEU LEU GLY ASP GLU VAL PHE VAL GLY VAL ARG THR SEQRES 7 A 133 VAL GLY LEU GLY ARG SER SER LEU ARG MSE GLU HIS LEU SEQRES 8 A 133 VAL THR ALA ASN GLY GLU SER ALA ALA LYS GLY LEU GLY SEQRES 9 A 133 VAL LEU VAL TRP LEU GLU GLY GLY ARG PRO ALA PRO LEU SEQRES 10 A 133 PRO GLU ALA ILE ARG GLU ARG ILE ARG ALA LEU GLU GLY SEQRES 11 A 133 ARG PRO LEU SEQRES 1 B 133 MSE GLU GLY PHE PRO VAL ARG VAL ARG VAL ASP VAL ARG SEQRES 2 B 133 PHE ARG ASP LEU ASP PRO LEU GLY HIS VAL ASN ASN ALA SEQRES 3 B 133 VAL PHE LEU SER TYR MSE GLU LEU ALA ARG ILE ARG TYR SEQRES 4 B 133 PHE GLN ARG ILE SER PRO ASP TRP LEU GLU GLU GLY HIS SEQRES 5 B 133 PHE VAL VAL ALA ARG MSE GLU VAL ASP TYR LEU ARG PRO SEQRES 6 B 133 ILE LEU LEU GLY ASP GLU VAL PHE VAL GLY VAL ARG THR SEQRES 7 B 133 VAL GLY LEU GLY ARG SER SER LEU ARG MSE GLU HIS LEU SEQRES 8 B 133 VAL THR ALA ASN GLY GLU SER ALA ALA LYS GLY LEU GLY SEQRES 9 B 133 VAL LEU VAL TRP LEU GLU GLY GLY ARG PRO ALA PRO LEU SEQRES 10 B 133 PRO GLU ALA ILE ARG GLU ARG ILE ARG ALA LEU GLU GLY SEQRES 11 B 133 ARG PRO LEU SEQRES 1 C 133 MSE GLU GLY PHE PRO VAL ARG VAL ARG VAL ASP VAL ARG SEQRES 2 C 133 PHE ARG ASP LEU ASP PRO LEU GLY HIS VAL ASN ASN ALA SEQRES 3 C 133 VAL PHE LEU SER TYR MSE GLU LEU ALA ARG ILE ARG TYR SEQRES 4 C 133 PHE GLN ARG ILE SER PRO ASP TRP LEU GLU GLU GLY HIS SEQRES 5 C 133 PHE VAL VAL ALA ARG MSE GLU VAL ASP TYR LEU ARG PRO SEQRES 6 C 133 ILE LEU LEU GLY ASP GLU VAL PHE VAL GLY VAL ARG THR SEQRES 7 C 133 VAL GLY LEU GLY ARG SER SER LEU ARG MSE GLU HIS LEU SEQRES 8 C 133 VAL THR ALA ASN GLY GLU SER ALA ALA LYS GLY LEU GLY SEQRES 9 C 133 VAL LEU VAL TRP LEU GLU GLY GLY ARG PRO ALA PRO LEU SEQRES 10 C 133 PRO GLU ALA ILE ARG GLU ARG ILE ARG ALA LEU GLU GLY SEQRES 11 C 133 ARG PRO LEU SEQRES 1 D 133 MSE GLU GLY PHE PRO VAL ARG VAL ARG VAL ASP VAL ARG SEQRES 2 D 133 PHE ARG ASP LEU ASP PRO LEU GLY HIS VAL ASN ASN ALA SEQRES 3 D 133 VAL PHE LEU SER TYR MSE GLU LEU ALA ARG ILE ARG TYR SEQRES 4 D 133 PHE GLN ARG ILE SER PRO ASP TRP LEU GLU GLU GLY HIS SEQRES 5 D 133 PHE VAL VAL ALA ARG MSE GLU VAL ASP TYR LEU ARG PRO SEQRES 6 D 133 ILE LEU LEU GLY ASP GLU VAL PHE VAL GLY VAL ARG THR SEQRES 7 D 133 VAL GLY LEU GLY ARG SER SER LEU ARG MSE GLU HIS LEU SEQRES 8 D 133 VAL THR ALA ASN GLY GLU SER ALA ALA LYS GLY LEU GLY SEQRES 9 D 133 VAL LEU VAL TRP LEU GLU GLY GLY ARG PRO ALA PRO LEU SEQRES 10 D 133 PRO GLU ALA ILE ARG GLU ARG ILE ARG ALA LEU GLU GLY SEQRES 11 D 133 ARG PRO LEU MODRES 2CYE MSE A 1 MET SELENOMETHIONINE MODRES 2CYE MSE A 32 MET SELENOMETHIONINE MODRES 2CYE MSE A 58 MET SELENOMETHIONINE MODRES 2CYE MSE A 88 MET SELENOMETHIONINE MODRES 2CYE MSE B 1 MET SELENOMETHIONINE MODRES 2CYE MSE B 32 MET SELENOMETHIONINE MODRES 2CYE MSE B 58 MET SELENOMETHIONINE MODRES 2CYE MSE B 88 MET SELENOMETHIONINE MODRES 2CYE MSE C 1 MET SELENOMETHIONINE MODRES 2CYE MSE C 32 MET SELENOMETHIONINE MODRES 2CYE MSE C 58 MET SELENOMETHIONINE MODRES 2CYE MSE C 88 MET SELENOMETHIONINE MODRES 2CYE MSE D 32 MET SELENOMETHIONINE MODRES 2CYE MSE D 58 MET SELENOMETHIONINE MODRES 2CYE MSE D 88 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 32 8 HET MSE A 58 8 HET MSE A 88 8 HET MSE B 1 8 HET MSE B 32 8 HET MSE B 58 8 HET MSE B 88 8 HET MSE C 1 8 HET MSE C 32 8 HET MSE C 58 8 HET MSE C 88 8 HET MSE D 32 8 HET MSE D 58 8 HET MSE D 88 8 HET ZN A1001 1 HET ZN B1002 1 HET ZN C1003 1 HET ZN D1004 1 HET COA B 601 48 HET COA C 602 48 HET COA C 603 48 HET COA B 604 48 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM COA COENZYME A FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 5 ZN 4(ZN 2+) FORMUL 9 COA 4(C21 H36 N7 O16 P3 S) FORMUL 13 HOH *296(H2 O) HELIX 1 1 ARG A 13 LEU A 17 5 5 HELIX 2 2 ASN A 24 GLN A 41 1 18 HELIX 3 3 ARG A 42 ILE A 43 5 2 HELIX 4 4 ASP A 46 GLY A 51 5 6 HELIX 5 5 PRO A 118 GLY A 130 1 13 HELIX 6 6 ARG B 13 LEU B 17 5 5 HELIX 7 7 ASN B 24 GLN B 41 1 18 HELIX 8 8 ASP B 46 GLY B 51 5 6 HELIX 9 9 PRO B 118 GLY B 130 1 13 HELIX 10 10 ARG C 13 LEU C 17 5 5 HELIX 11 11 ASN C 24 SER C 44 1 21 HELIX 12 12 GLU C 49 GLY C 51 5 3 HELIX 13 13 PRO C 118 GLY C 130 1 13 HELIX 14 14 ARG D 13 LEU D 17 5 5 HELIX 15 15 ASN D 24 GLN D 41 1 18 HELIX 16 16 ASP D 46 GLY D 51 5 6 HELIX 17 17 PRO D 118 ARG D 126 1 9 SHEET 1 A10 VAL A 6 ASP A 11 0 SHEET 2 A10 GLU A 71 LEU A 81 -1 O VAL A 74 N VAL A 8 SHEET 3 A10 SER A 85 ALA A 94 -1 O ARG A 87 N VAL A 79 SHEET 4 A10 GLU A 97 GLU A 110 -1 O ALA A 99 N VAL A 92 SHEET 5 A10 PHE A 53 TYR A 62 -1 N ALA A 56 O VAL A 105 SHEET 6 A10 PHE C 53 TYR C 62 -1 O TYR C 62 N ALA A 56 SHEET 7 A10 GLU C 97 GLU C 110 -1 O VAL C 105 N ALA C 56 SHEET 8 A10 SER C 85 ALA C 94 -1 N VAL C 92 O ALA C 99 SHEET 9 A10 GLU C 71 LEU C 81 -1 N VAL C 79 O ARG C 87 SHEET 10 A10 VAL C 6 ASP C 11 -1 N VAL C 10 O VAL C 72 SHEET 1 B 6 ARG A 113 PRO A 114 0 SHEET 2 B 6 GLU A 97 GLU A 110 -1 N GLU A 110 O ARG A 113 SHEET 3 B 6 PHE A 53 TYR A 62 -1 N ALA A 56 O VAL A 105 SHEET 4 B 6 PHE C 53 TYR C 62 -1 O TYR C 62 N ALA A 56 SHEET 5 B 6 GLU C 97 GLU C 110 -1 O VAL C 105 N ALA C 56 SHEET 6 B 6 ARG C 113 PRO C 114 -1 O ARG C 113 N GLU C 110 SHEET 1 C10 VAL B 6 VAL B 10 0 SHEET 2 C10 VAL B 72 LEU B 81 -1 O VAL B 74 N VAL B 8 SHEET 3 C10 SER B 85 ALA B 94 -1 O ARG B 87 N VAL B 79 SHEET 4 C10 GLU B 97 GLU B 110 -1 O GLY B 104 N MSE B 88 SHEET 5 C10 PHE B 53 TYR B 62 -1 N ALA B 56 O VAL B 105 SHEET 6 C10 PHE D 53 TYR D 62 -1 O VAL D 60 N MSE B 58 SHEET 7 C10 GLU D 97 GLU D 110 -1 O VAL D 105 N ALA D 56 SHEET 8 C10 SER D 85 ALA D 94 -1 N VAL D 92 O ALA D 99 SHEET 9 C10 VAL D 72 LEU D 81 -1 N VAL D 79 O ARG D 87 SHEET 10 C10 VAL D 6 VAL D 10 -1 N VAL D 8 O VAL D 74 SHEET 1 D 6 ARG B 113 PRO B 114 0 SHEET 2 D 6 GLU B 97 GLU B 110 -1 N GLU B 110 O ARG B 113 SHEET 3 D 6 PHE B 53 TYR B 62 -1 N ALA B 56 O VAL B 105 SHEET 4 D 6 PHE D 53 TYR D 62 -1 O VAL D 60 N MSE B 58 SHEET 5 D 6 GLU D 97 GLU D 110 -1 O VAL D 105 N ALA D 56 SHEET 6 D 6 ARG D 113 PRO D 114 -1 O ARG D 113 N GLU D 110 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C TYR A 31 N MSE A 32 1555 1555 1.33 LINK C MSE A 32 N GLU A 33 1555 1555 1.33 LINK C ARG A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N GLU A 59 1555 1555 1.33 LINK C ARG A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N GLU A 89 1555 1555 1.33 LINK ZN ZN A1001 OD1 ASP A 18 1555 1555 2.26 LINK ZN ZN A1001 OE2 GLU C 50 1555 1555 2.15 LINK ZN ZN A1001 S1P COA C 602 1555 1555 2.41 LINK ZN ZN A1001 NE2 HIS A 22 1555 1555 2.11 LINK C MSE B 1 N GLU B 2 1555 1555 1.33 LINK C TYR B 31 N MSE B 32 1555 1555 1.33 LINK C MSE B 32 N GLU B 33 1555 1555 1.32 LINK C ARG B 57 N MSE B 58 1555 1555 1.32 LINK C MSE B 58 N GLU B 59 1555 1555 1.33 LINK C ARG B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N GLU B 89 1555 1555 1.33 LINK ZN ZN B1002 S1P COA B 601 1555 1555 2.40 LINK ZN ZN B1002 OE2 GLU D 50 1555 1555 2.68 LINK ZN ZN B1002 OD2 ASP B 18 1555 1555 2.16 LINK ZN ZN B1002 NE2 HIS B 22 1555 1555 2.10 LINK ZN ZN B1002 OE1 GLU D 50 1555 1555 2.12 LINK C MSE C 1 N GLU C 2 1555 1555 1.33 LINK C TYR C 31 N MSE C 32 1555 1555 1.33 LINK C MSE C 32 N GLU C 33 1555 1555 1.33 LINK C ARG C 57 N MSE C 58 1555 1555 1.33 LINK C MSE C 58 N GLU C 59 1555 1555 1.33 LINK C ARG C 87 N MSE C 88 1555 1555 1.33 LINK C MSE C 88 N GLU C 89 1555 1555 1.33 LINK ZN ZN C1003 OE1 GLU A 50 1555 1555 2.70 LINK ZN ZN C1003 S1P COA C 603 1555 1555 2.37 LINK ZN ZN C1003 NE2 HIS C 22 1555 1555 2.10 LINK ZN ZN C1003 OD2 ASP C 18 1555 1555 2.13 LINK ZN ZN C1003 OE2 GLU A 50 1555 1555 2.08 LINK C TYR D 31 N MSE D 32 1555 1555 1.33 LINK C MSE D 32 N GLU D 33 1555 1555 1.32 LINK C ARG D 57 N MSE D 58 1555 1555 1.33 LINK C MSE D 58 N GLU D 59 1555 1555 1.33 LINK C ARG D 87 N MSE D 88 1555 1555 1.33 LINK C MSE D 88 N GLU D 89 1555 1555 1.33 LINK ZN ZN D1004 OE1 GLU B 50 1555 1555 2.63 LINK ZN ZN D1004 OD1 ASP D 18 1555 1555 2.18 LINK ZN ZN D1004 OE2 GLU B 50 1555 1555 2.04 LINK ZN ZN D1004 NE2 HIS D 22 1555 1555 2.11 LINK ZN ZN D1004 S1P COA B 604 1555 1555 2.36 SITE 1 AC1 4 ASP A 18 HIS A 22 GLU C 50 COA C 602 SITE 1 AC2 4 ASP B 18 HIS B 22 COA B 601 GLU D 50 SITE 1 AC3 4 GLU A 50 ASP C 18 HIS C 22 COA C 603 SITE 1 AC4 4 GLU B 50 COA B 604 ASP D 18 HIS D 22 SITE 1 AC5 23 HIS B 22 VAL B 23 ASP B 61 TYR B 62 SITE 2 AC5 23 LEU B 63 ARG B 64 PRO B 65 ZN B1002 SITE 3 AC5 23 HOH B1006 HOH B1016 HOH B1034 HOH B1041 SITE 4 AC5 23 HOH B1073 GLU D 50 VAL D 55 ALA D 56 SITE 5 AC5 23 ARG D 57 GLY D 82 ARG D 83 SER D 84 SITE 6 AC5 23 SER D 85 PRO D 114 HOH D1042 SITE 1 AC6 26 HIS A 22 VAL A 23 ASP A 61 TYR A 62 SITE 2 AC6 26 LEU A 63 ARG A 64 PRO A 65 ZN A1001 SITE 3 AC6 26 HOH A1006 HOH A1012 HOH A1023 GLU C 50 SITE 4 AC6 26 VAL C 55 ALA C 56 ARG C 57 GLY C 82 SITE 5 AC6 26 ARG C 83 SER C 84 SER C 85 PRO C 114 SITE 6 AC6 26 COA C 603 HOH C1040 HOH C1050 HOH C1051 SITE 7 AC6 26 HOH C1064 HOH C1081 SITE 1 AC7 31 GLU A 50 VAL A 55 ALA A 56 ARG A 57 SITE 2 AC7 31 GLY A 82 ARG A 83 SER A 84 SER A 85 SITE 3 AC7 31 PRO A 114 ASP C 18 HIS C 22 VAL C 23 SITE 4 AC7 31 ASP C 61 TYR C 62 LEU C 63 ARG C 64 SITE 5 AC7 31 PRO C 65 ARG C 83 COA C 602 ZN C1003 SITE 6 AC7 31 HOH C1007 HOH C1010 HOH C1014 HOH C1040 SITE 7 AC7 31 HOH C1045 HOH C1062 HOH C1064 HOH C1065 SITE 8 AC7 31 HOH C1074 HOH C1075 HOH C1081 SITE 1 AC8 30 GLU B 50 VAL B 55 ALA B 56 ARG B 57 SITE 2 AC8 30 GLY B 82 ARG B 83 SER B 84 SER B 85 SITE 3 AC8 30 LEU B 109 PRO B 114 HOH B1003 HOH B1043 SITE 4 AC8 30 HOH B1048 HOH B1052 HOH B1062 ASP D 18 SITE 5 AC8 30 HIS D 22 VAL D 23 ASP D 61 TYR D 62 SITE 6 AC8 30 LEU D 63 ARG D 64 PRO D 65 LEU D 81 SITE 7 AC8 30 GLY D 82 ARG D 83 ARG D 122 ZN D1004 SITE 8 AC8 30 HOH D1007 HOH D1008 CRYST1 89.530 55.817 110.147 90.00 102.42 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011169 0.000000 0.002459 0.00000 SCALE2 0.000000 0.017916 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009296 0.00000 HETATM 1 N MSE A 1 36.279 30.347 45.108 1.00 11.00 N HETATM 2 CA MSE A 1 35.576 31.147 46.160 1.00 18.75 C HETATM 3 C MSE A 1 35.264 30.217 47.329 1.00 16.92 C HETATM 4 O MSE A 1 34.579 29.208 47.152 1.00 20.34 O HETATM 5 CB MSE A 1 34.274 31.730 45.597 1.00 17.71 C HETATM 6 CG MSE A 1 33.574 32.685 46.551 1.00 18.21 C HETATM 7 SE MSE A 1 31.954 33.441 45.818 1.00 12.84 SE HETATM 8 CE MSE A 1 32.758 34.551 44.433 1.00 14.13 C