HEADER ISOMERASE, TRANSFERASE 10-JUL-05 2CZ2 TITLE CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE ZETA 1-1 TITLE 2 (MALEYLACETOACETATE ISOMERASE) FROM MUS MUSCULUS (FORM-1 CRYSTAL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALEYLACETOACETATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTATHIONE TRANSFERASE ZETA 1-1 (MALEYLACETOACETATE COMPND 5 ISOMERASE), MAAI, GLUTATHIONE S-TRANSFERASE ZETA 1, GSTZ1-1; COMPND 6 EC: 5.2.1.2, 2.5.1.18; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PX041214-30; SOURCE 7 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS STRUCTURAL GENOMICS, GST, GSTZ1-1, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, ISOMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MIZOHATA,S.MORITA,Y.KINOSHITA,K.NAGANO,H.UDA,T.UCHIKUBO,M.SHIROUZU, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 13-JUL-11 2CZ2 1 VERSN REVDAT 2 24-FEB-09 2CZ2 1 VERSN REVDAT 1 10-JAN-06 2CZ2 0 JRNL AUTH E.MIZOHATA,S.MORITA,Y.KINOSHITA,K.NAGANO,H.UDA,T.UCHIKUBO, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE ZETA 1-1 JRNL TITL 2 (MALEYLACETOACETATE ISOMERASE) FROM MUS MUSCULUS (FORM-1 JRNL TITL 3 CRYSTAL) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 40428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2152 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.95000 REMARK 3 B33 (A**2) : -0.68000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.063 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.043 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.140 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1730 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1624 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2344 ; 1.516 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3800 ; 0.918 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 5.538 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 270 ; 0.244 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1873 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 308 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 411 ; 0.242 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1950 ; 0.243 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1012 ; 0.082 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 142 ; 0.207 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.199 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.274 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.342 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1063 ; 1.398 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1736 ; 2.114 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 667 ; 3.731 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 608 ; 5.624 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4875 20.0089 3.8774 REMARK 3 T TENSOR REMARK 3 T11: 0.0080 T22: 0.0004 REMARK 3 T33: 0.0071 T12: -0.0008 REMARK 3 T13: -0.0021 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.1196 L22: 0.1443 REMARK 3 L33: 0.1557 L12: -0.0119 REMARK 3 L13: 0.0244 L23: 0.0360 REMARK 3 S TENSOR REMARK 3 S11: -0.0050 S12: 0.0067 S13: 0.0050 REMARK 3 S21: -0.0136 S22: 0.0024 S23: -0.0088 REMARK 3 S31: -0.0081 S32: 0.0011 S33: 0.0026 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2CZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-JUL-05. REMARK 100 THE RCSB ID CODE IS RCSB024784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS V REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42592 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, SODIUM CACODYLATE, REMARK 280 DITHIOTHREITOL, SODIUM CHLORIDE, TRIS, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.52550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.52550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.98350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 76.06700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.98350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 76.06700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.52550 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.98350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 76.06700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.52550 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.98350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 76.06700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 5460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.52550 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2153 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2166 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2150 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2172 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2157 LIES ON A SPECIAL POSITION. REMARK 375 HOH A2151 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 SER A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 2 REMARK 465 ALA A 3 REMARK 465 THR A 216 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 215 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2135 O HOH A 2167 1.97 REMARK 500 CG MSE A 128 O HOH A 2152 2.08 REMARK 500 O HOH A 2084 O HOH A 2085 2.11 REMARK 500 OE1 GLU A 197 O HOH A 2163 2.18 REMARK 500 SE MSE A 128 O HOH A 2152 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2057 O HOH A 2057 3655 2.08 REMARK 500 O HOH A 2123 O HOH A 2184 4555 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 71 109.93 80.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2115 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A2127 DISTANCE = 5.47 ANGSTROMS REMARK 525 HOH A2128 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A2132 DISTANCE = 5.08 ANGSTROMS REMARK 525 HOH A2166 DISTANCE = 5.20 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 2001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CZ3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN, FORM-2 CRYSTAL REMARK 900 RELATED ID: MMK001000137.2 RELATED DB: TARGETDB DBREF 2CZ2 A 1 216 UNP Q9WVL0 MAAI_MOUSE 1 216 SEQADV 2CZ2 GLY A -6 UNP Q9WVL0 CLONING ARTIFACT SEQADV 2CZ2 SER A -5 UNP Q9WVL0 CLONING ARTIFACT SEQADV 2CZ2 SER A -4 UNP Q9WVL0 CLONING ARTIFACT SEQADV 2CZ2 GLY A -3 UNP Q9WVL0 CLONING ARTIFACT SEQADV 2CZ2 SER A -2 UNP Q9WVL0 CLONING ARTIFACT SEQADV 2CZ2 SER A -1 UNP Q9WVL0 CLONING ARTIFACT SEQADV 2CZ2 GLY A 0 UNP Q9WVL0 CLONING ARTIFACT SEQADV 2CZ2 MSE A 1 UNP Q9WVL0 MET 1 MODIFIED RESIDUE SEQADV 2CZ2 MSE A 56 UNP Q9WVL0 MET 56 MODIFIED RESIDUE SEQADV 2CZ2 MSE A 76 UNP Q9WVL0 MET 76 MODIFIED RESIDUE SEQADV 2CZ2 MSE A 101 UNP Q9WVL0 MET 101 MODIFIED RESIDUE SEQADV 2CZ2 MSE A 128 UNP Q9WVL0 MET 128 MODIFIED RESIDUE SEQADV 2CZ2 MSE A 161 UNP Q9WVL0 MET 161 MODIFIED RESIDUE SEQRES 1 A 223 GLY SER SER GLY SER SER GLY MSE GLN ALA GLY LYS PRO SEQRES 2 A 223 ILE LEU TYR SER TYR PHE ARG SER SER CYS SER TRP ARG SEQRES 3 A 223 VAL ARG ILE ALA LEU ALA LEU LYS GLY ILE ASP TYR GLU SEQRES 4 A 223 ILE VAL PRO ILE ASN LEU ILE LYS ASP GLY GLY GLN GLN SEQRES 5 A 223 PHE THR GLU GLU PHE GLN THR LEU ASN PRO MSE LYS GLN SEQRES 6 A 223 VAL PRO ALA LEU LYS ILE ASP GLY ILE THR ILE VAL GLN SEQRES 7 A 223 SER LEU ALA ILE MSE GLU TYR LEU GLU GLU THR ARG PRO SEQRES 8 A 223 ILE PRO ARG LEU LEU PRO GLN ASP PRO GLN LYS ARG ALA SEQRES 9 A 223 ILE VAL ARG MSE ILE SER ASP LEU ILE ALA SER GLY ILE SEQRES 10 A 223 GLN PRO LEU GLN ASN LEU SER VAL LEU LYS GLN VAL GLY SEQRES 11 A 223 GLN GLU ASN GLN MSE GLN TRP ALA GLN LYS VAL ILE THR SEQRES 12 A 223 SER GLY PHE ASN ALA LEU GLU LYS ILE LEU GLN SER THR SEQRES 13 A 223 ALA GLY LYS TYR CYS VAL GLY ASP GLU VAL SER MSE ALA SEQRES 14 A 223 ASP VAL CYS LEU VAL PRO GLN VAL ALA ASN ALA GLU ARG SEQRES 15 A 223 PHE LYS VAL ASP LEU SER PRO TYR PRO THR ILE SER HIS SEQRES 16 A 223 ILE ASN LYS GLU LEU LEU ALA LEU GLU VAL PHE GLN VAL SEQRES 17 A 223 SER HIS PRO ARG ARG GLN PRO ASP THR PRO ALA GLU LEU SEQRES 18 A 223 ARG THR MODRES 2CZ2 MSE A 56 MET SELENOMETHIONINE MODRES 2CZ2 MSE A 76 MET SELENOMETHIONINE MODRES 2CZ2 MSE A 101 MET SELENOMETHIONINE MODRES 2CZ2 MSE A 128 MET SELENOMETHIONINE MODRES 2CZ2 MSE A 161 MET SELENOMETHIONINE HET MSE A 56 8 HET MSE A 76 8 HET MSE A 101 8 HET MSE A 128 8 HET MSE A 161 8 HET GSH A1001 20 HET GOL A2001 6 HETNAM MSE SELENOMETHIONINE HETNAM GSH GLUTATHIONE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 GSH C10 H17 N3 O6 S FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *190(H2 O) HELIX 1 1 SER A 14 LYS A 27 1 14 HELIX 2 2 ILE A 39 PHE A 46 5 8 HELIX 3 3 THR A 47 ASN A 54 1 8 HELIX 4 4 GLN A 71 ARG A 83 1 13 HELIX 5 5 ASP A 92 ILE A 110 1 19 HELIX 6 6 GLN A 111 GLN A 114 5 4 HELIX 7 7 ASN A 115 GLY A 123 1 9 HELIX 8 8 ASN A 126 ALA A 150 1 25 HELIX 9 9 SER A 160 PHE A 176 1 17 HELIX 10 10 TYR A 183 ALA A 195 1 13 HELIX 11 11 LEU A 196 VAL A 201 1 6 HELIX 12 12 HIS A 203 GLN A 207 5 5 HELIX 13 13 PRO A 211 ARG A 215 5 5 SHEET 1 A 4 GLU A 32 PRO A 35 0 SHEET 2 A 4 ILE A 7 SER A 10 1 N LEU A 8 O GLU A 32 SHEET 3 A 4 ALA A 61 ILE A 64 -1 O ALA A 61 N TYR A 9 SHEET 4 A 4 ILE A 67 VAL A 70 -1 O ILE A 69 N LEU A 62 LINK C PRO A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N LYS A 57 1555 1555 1.33 LINK C ILE A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N GLU A 77 1555 1555 1.33 LINK C ARG A 100 N MSE A 101 1555 1555 1.32 LINK C MSE A 101 N ILE A 102 1555 1555 1.33 LINK C GLN A 127 N MSE A 128 1555 1555 1.32 LINK C MSE A 128 N GLN A 129 1555 1555 1.33 LINK C SER A 160 N MSE A 161 1555 1555 1.32 LINK C MSE A 161 N ALA A 162 1555 1555 1.35 CISPEP 1 VAL A 59 PRO A 60 0 4.42 CISPEP 2 ILE A 85 PRO A 86 0 -8.21 SITE 1 AC1 19 SER A 14 CYS A 16 ARG A 19 GLN A 45 SITE 2 AC1 19 GLN A 58 VAL A 59 PRO A 60 GLN A 71 SITE 3 AC1 19 SER A 72 SER A 108 GLN A 111 ASN A 115 SITE 4 AC1 19 LEU A 116 SER A 117 HOH A2020 HOH A2022 SITE 5 AC1 19 HOH A2025 HOH A2026 HOH A2074 SITE 1 AC2 8 VAL A 155 GLY A 156 ASP A 157 GLU A 158 SITE 2 AC2 8 VAL A 159 SER A 160 HOH A2059 HOH A2076 CRYST1 49.967 152.134 57.051 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020013 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017528 0.00000