HEADER ELECTRON TRANSPORT 10-AUG-05 2D0W TITLE CRYSTAL STRUCTURE OF CYTOCHROME CL FROM HYPHOMICROBIUM TITLE 2 DENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME CL; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPHOMICROBIUM DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 53399; SOURCE 4 STRAIN: A3151 KEYWDS ELECTRON TRANSFER, CYTOCHROME, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.NOJIRI,D.HIRA,K.YAMAGUCHI,S.SUZUKI REVDAT 2 24-FEB-09 2D0W 1 VERSN REVDAT 1 10-AUG-06 2D0W 0 JRNL AUTH M.NOJIRI,D.HIRA,K.YAMAGUCHI,T.OKAJIMA,K.TANIZAWA, JRNL AUTH 2 S.SUZUKI JRNL TITL CRYSTAL STRUCTURES OF CYTOCHROME C(L) AND METHANOL JRNL TITL 2 DEHYDROGENASE FROM HYPHOMICROBIUM DENITRIFICANS: JRNL TITL 3 STRUCTURAL AND MECHANISTIC INSIGHTS INTO JRNL TITL 4 INTERACTIONS BETWEEN THE TWO PROTEINS JRNL REF BIOCHEMISTRY V. 45 3481 2006 JRNL REFN ISSN 0006-2960 JRNL PMID 16533029 JRNL DOI 10.1021/BI051877J REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 140721.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 22502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2196 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.11 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3148 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 292 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.66000 REMARK 3 B22 (A**2) : -3.29000 REMARK 3 B33 (A**2) : -1.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.15 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 1.90 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.94 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 51.40 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : TEST2HEC.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : TEST2HEC.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D0W COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-AUG-05. REMARK 100 THE RCSB ID CODE IS RCSB024849. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.7 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22502 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 29.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG10000, ZINC SULFATE, PH 7.3, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.64150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 169 REMARK 465 ASN A 170 REMARK 465 GLY B 169 REMARK 465 ASN B 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 6 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 6 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 2 133.10 -37.97 REMARK 500 PRO A 21 150.33 -46.59 REMARK 500 LYS A 70 -115.34 -146.05 REMARK 500 ALA A 99 -138.71 -133.35 REMARK 500 THR A 155 -29.32 -145.43 REMARK 500 GLN B 2 129.18 -23.19 REMARK 500 LYS B 70 -91.07 -142.67 REMARK 500 ALA B 99 -132.47 -139.13 REMARK 500 ASP B 129 156.81 3.27 REMARK 500 THR B 155 -39.71 -144.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1312 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH A1391 DISTANCE = 5.54 ANGSTROMS REMARK 525 HOH B1431 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A1437 DISTANCE = 7.62 ANGSTROMS REMARK 525 HOH B1438 DISTANCE = 6.40 ANGSTROMS REMARK 525 HOH B1439 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH B1440 DISTANCE = 5.55 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 63 NE2 REMARK 620 2 MET A 103 SD 178.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 63 NE2 REMARK 620 2 MET B 103 SD 178.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 65 ND1 REMARK 620 2 GLU A 68 OE1 111.2 REMARK 620 3 HIS A 65 N 94.9 119.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1424 O REMARK 620 2 ASP A 109 OD1 118.6 REMARK 620 3 HIS A 106 ND1 120.3 105.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1214 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1252 O REMARK 620 2 HOH A1235 O 161.5 REMARK 620 3 TYR A 79 O 86.6 95.4 REMARK 620 4 GLY A 74 O 87.1 95.9 161.9 REMARK 620 5 HOH A1225 O 130.9 67.5 86.5 84.9 REMARK 620 6 ASP A 77 OD2 76.8 84.8 91.3 103.7 151.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1220 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 153 OE1 REMARK 620 2 HOH A1309 O 107.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B1313 O REMARK 620 2 TYR B 79 O 93.9 REMARK 620 3 ASP B 77 OD1 91.5 83.1 REMARK 620 4 HOH B1432 O 120.0 90.5 148.2 REMARK 620 5 HOH B1225 O 169.8 95.2 85.0 64.5 REMARK 620 6 ASP B 77 OD2 92.0 133.9 51.1 124.9 78.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 68 OE1 REMARK 620 2 HIS B 65 ND1 109.9 REMARK 620 3 HIS B 65 N 119.7 92.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1211 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 134 OD2 REMARK 620 2 ASP B 134 OD1 53.5 REMARK 620 3 HOH B1298 O 91.8 106.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 109 OD1 REMARK 620 2 HIS B 106 ND1 142.8 REMARK 620 3 HOH B1410 O 76.7 106.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1203 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1205 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1206 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1207 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1211 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1214 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1218 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1219 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1220 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 200 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D0V RELATED DB: PDB REMARK 900 METHANOL DEHYDROGENASE FROM HYPHOMICROBIUM DENITRIFICANS DBREF 2D0W A 1 170 UNP Q4AE24 Q4AE24_9RHIZ 24 193 DBREF 2D0W B 1 170 UNP Q4AE24 Q4AE24_9RHIZ 24 193 SEQRES 1 A 170 ALA GLN GLU VAL PHE ARG ASN THR VAL THR GLY GLU ALA SEQRES 2 A 170 LEU ASP VAL GLU GLY GLN ALA PRO LYS GLU GLY ARG ASP SEQRES 3 A 170 THR PRO ALA VAL LYS GLN PHE MET GLN THR GLY VAL ASP SEQRES 4 A 170 PRO TYR VAL GLU VAL ALA GLY CYS LEU PRO LYS GLY GLU SEQRES 5 A 170 GLU ILE TYR LEU GLU SER CYS SER GLY CYS HIS GLY HIS SEQRES 6 A 170 ILE GLY GLU GLY LYS VAL GLY PRO GLY LEU ASN ASP SER SEQRES 7 A 170 TYR TRP THR TYR PRO LYS ASN THR THR ASP LYS GLY LEU SEQRES 8 A 170 PHE GLU THR ILE PHE GLY GLY ALA ASN GLY MET MET GLY SEQRES 9 A 170 PRO HIS GLY GLN ASP LEU GLU LEU ASP ASN MET LEU LYS SEQRES 10 A 170 LEU ILE ALA TRP ILE ARG HIS ILE GLN LYS ASP ASP VAL SEQRES 11 A 170 ALA ASP ALA ASP TRP LEU SER ASP GLU GLN LYS LYS ASN SEQRES 12 A 170 PHE LYS PRO PHE ASP ILE LYS ALA TRP GLU ALA THR GLY SEQRES 13 A 170 LYS ALA ALA ALA GLU LYS ALA GLN CYS LYS ILE SER GLY SEQRES 14 A 170 ASN SEQRES 1 B 170 ALA GLN GLU VAL PHE ARG ASN THR VAL THR GLY GLU ALA SEQRES 2 B 170 LEU ASP VAL GLU GLY GLN ALA PRO LYS GLU GLY ARG ASP SEQRES 3 B 170 THR PRO ALA VAL LYS GLN PHE MET GLN THR GLY VAL ASP SEQRES 4 B 170 PRO TYR VAL GLU VAL ALA GLY CYS LEU PRO LYS GLY GLU SEQRES 5 B 170 GLU ILE TYR LEU GLU SER CYS SER GLY CYS HIS GLY HIS SEQRES 6 B 170 ILE GLY GLU GLY LYS VAL GLY PRO GLY LEU ASN ASP SER SEQRES 7 B 170 TYR TRP THR TYR PRO LYS ASN THR THR ASP LYS GLY LEU SEQRES 8 B 170 PHE GLU THR ILE PHE GLY GLY ALA ASN GLY MET MET GLY SEQRES 9 B 170 PRO HIS GLY GLN ASP LEU GLU LEU ASP ASN MET LEU LYS SEQRES 10 B 170 LEU ILE ALA TRP ILE ARG HIS ILE GLN LYS ASP ASP VAL SEQRES 11 B 170 ALA ASP ALA ASP TRP LEU SER ASP GLU GLN LYS LYS ASN SEQRES 12 B 170 PHE LYS PRO PHE ASP ILE LYS ALA TRP GLU ALA THR GLY SEQRES 13 B 170 LYS ALA ALA ALA GLU LYS ALA GLN CYS LYS ILE SER GLY SEQRES 14 B 170 ASN HET ZN B1203 1 HET ZN A1205 1 HET ZN A1206 1 HET ZN B1207 1 HET ZN B1211 1 HET ZN A1214 1 HET ZN B1218 1 HET ZN B1219 1 HET ZN A1220 1 HET ZN A1222 1 HET HEM A 200 43 HET HEM B 201 43 HETNAM ZN ZINC ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 3 ZN 10(ZN 2+) FORMUL 13 HEM 2(C34 H32 FE N4 O4) FORMUL 15 HOH *447(H2 O) HELIX 1 1 ASP A 15 ALA A 20 1 6 HELIX 2 2 THR A 27 GLY A 37 1 11 HELIX 3 3 VAL A 44 GLY A 46 5 3 HELIX 4 4 CYS A 47 CYS A 59 1 13 HELIX 5 5 CYS A 59 GLY A 64 1 6 HELIX 6 6 TYR A 82 THR A 86 5 5 HELIX 7 7 THR A 87 GLY A 98 1 12 HELIX 8 8 GLU A 111 ILE A 125 1 15 HELIX 9 9 SER A 137 PHE A 144 1 8 HELIX 10 10 ASP A 148 THR A 155 1 8 HELIX 11 11 THR A 155 LYS A 162 1 8 HELIX 12 12 ASP B 15 ALA B 20 1 6 HELIX 13 13 THR B 27 GLY B 37 1 11 HELIX 14 14 VAL B 44 GLY B 46 5 3 HELIX 15 15 CYS B 47 CYS B 59 1 13 HELIX 16 16 CYS B 59 GLY B 64 1 6 HELIX 17 17 TYR B 82 THR B 86 5 5 HELIX 18 18 THR B 87 GLY B 98 1 12 HELIX 19 19 GLU B 111 ILE B 125 1 15 HELIX 20 20 SER B 137 ASN B 143 1 7 HELIX 21 21 ASP B 148 THR B 155 1 8 HELIX 22 22 THR B 155 ALA B 163 1 9 SSBOND 1 CYS A 47 CYS A 165 1555 1555 2.05 SSBOND 2 CYS B 47 CYS B 165 1555 1555 2.04 LINK FE HEM A 200 NE2 HIS A 63 1555 1555 1.86 LINK FE HEM A 200 SD MET A 103 1555 1555 2.35 LINK CAB HEM A 200 SG CYS A 59 1555 1555 2.09 LINK CAC HEM A 200 SG CYS A 62 1555 1555 2.19 LINK FE HEM B 201 NE2 HIS B 63 1555 1555 2.15 LINK FE HEM B 201 SD MET B 103 1555 1555 2.22 LINK CAB HEM B 201 SG CYS B 59 1555 1555 2.09 LINK CAC HEM B 201 SG CYS B 62 1555 1555 2.13 LINK ZN ZN A1205 ND1 HIS A 65 1555 1555 1.93 LINK ZN ZN A1205 OE1 GLU A 68 1555 1555 1.80 LINK ZN ZN A1205 N HIS A 65 1555 1555 2.22 LINK ZN ZN A1206 O HOH A1424 1555 1555 2.16 LINK ZN ZN A1206 OD1 ASP A 109 1555 1555 2.21 LINK ZN ZN A1206 ND1 HIS A 106 1555 1555 2.23 LINK ZN ZN A1214 O HOH A1252 1555 1555 2.44 LINK ZN ZN A1214 O HOH A1235 1555 1555 2.61 LINK ZN ZN A1214 O TYR A 79 1555 1555 2.32 LINK ZN ZN A1214 O GLY A 74 1555 1555 2.54 LINK ZN ZN A1214 O HOH A1225 1555 1555 2.57 LINK ZN ZN A1214 OD2 ASP A 77 1555 1555 2.26 LINK ZN ZN A1220 OE1 GLU A 153 1555 1555 2.25 LINK ZN ZN A1220 O HOH A1309 1555 1555 2.53 LINK ZN ZN B1203 O HOH B1313 1555 1555 2.38 LINK ZN ZN B1203 O TYR B 79 1555 1555 2.10 LINK ZN ZN B1203 OD1 ASP B 77 1555 1555 2.28 LINK ZN ZN B1203 O HOH B1432 1555 1555 2.13 LINK ZN ZN B1203 O HOH B1225 1555 1555 2.35 LINK ZN ZN B1203 OD2 ASP B 77 1555 1555 2.72 LINK ZN ZN B1207 OE1 GLU B 68 1555 1555 1.78 LINK ZN ZN B1207 ND1 HIS B 65 1555 1555 2.19 LINK ZN ZN B1207 N HIS B 65 1555 1555 2.05 LINK ZN ZN B1211 OD2 ASP B 134 1555 1555 2.67 LINK ZN ZN B1211 OD1 ASP B 134 1555 1555 2.16 LINK ZN ZN B1211 O HOH B1298 1555 1555 2.29 LINK ZN ZN B1218 OD1 ASP B 109 1555 1555 2.23 LINK ZN ZN B1218 ND1 HIS B 106 1555 1555 2.19 LINK ZN ZN B1218 O HOH B1410 1555 1555 2.66 LINK ZN ZN B1219 OE2 GLU B 3 1555 1555 1.94 SITE 1 AC1 6 GLY B 74 ASP B 77 TYR B 79 HOH B1225 SITE 2 AC1 6 HOH B1313 HOH B1432 SITE 1 AC2 4 GLY A 64 HIS A 65 ILE A 66 GLU A 68 SITE 1 AC3 3 HIS A 106 ASP A 109 HOH A1424 SITE 1 AC4 3 GLY B 64 HIS B 65 GLU B 68 SITE 1 AC5 3 ASP B 134 HOH B1298 HOH B1323 SITE 1 AC6 6 GLY A 74 ASP A 77 TYR A 79 HOH A1225 SITE 2 AC6 6 HOH A1235 HOH A1252 SITE 1 AC7 3 HIS B 106 ASP B 109 HOH B1410 SITE 1 AC8 1 GLU B 3 SITE 1 AC9 2 GLU A 153 HOH A1309 SITE 1 BC1 19 SER A 58 CYS A 59 CYS A 62 HIS A 63 SITE 2 BC1 19 PRO A 73 TRP A 80 THR A 81 TYR A 82 SITE 3 BC1 19 ASN A 85 LEU A 91 THR A 94 ALA A 99 SITE 4 BC1 19 ASN A 100 MET A 103 HIS A 106 ILE A 122 SITE 5 BC1 19 HOH A1225 HOH A1266 HOH A1305 SITE 1 BC2 20 SER B 58 CYS B 59 CYS B 62 HIS B 63 SITE 2 BC2 20 PRO B 73 LEU B 75 TRP B 80 THR B 81 SITE 3 BC2 20 TYR B 82 ASN B 85 LEU B 91 ILE B 95 SITE 4 BC2 20 ALA B 99 ASN B 100 MET B 103 HIS B 106 SITE 5 BC2 20 ILE B 122 HOH B1242 HOH B1318 HOH B1432 CRYST1 45.779 57.283 67.007 90.00 101.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021844 0.000000 0.004464 0.00000 SCALE2 0.000000 0.017457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015232 0.00000