HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-AUG-05 2D16 TITLE CRYSTAL STRUCTURE OF PH1918 PROTEIN FROM PYROCOCCUS HORIKOSHII OT3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN PH1918; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS HORIKOSHII; SOURCE 3 ORGANISM_TAXID: 70601; SOURCE 4 STRAIN: OT3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS HYPOTHETICAL, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON KEYWDS 2 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR N.K.LOKANATH,N.KUNISHIMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 4 25-OCT-23 2D16 1 REMARK LINK REVDAT 3 13-JUL-11 2D16 1 VERSN REVDAT 2 24-FEB-09 2D16 1 VERSN REVDAT 1 31-OCT-06 2D16 0 JRNL AUTH N.K.LOKANATH,N.KUNISHIMA JRNL TITL CRYSTAL STRUCTURE OF PH1918 PROTEIN FROM PYROCOCCUS JRNL TITL 2 HORIKOSHII OT3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1827339.780 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3748 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11409 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 613 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 596 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.85000 REMARK 3 B22 (A**2) : 5.85000 REMARK 3 B33 (A**2) : -11.70000 REMARK 3 B12 (A**2) : 3.62000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.24 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.940 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.370 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.870 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.830 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 50.73 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GOL.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-05. REMARK 100 THE DEPOSITION ID IS D_1000024859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : GRAPHITE REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VGG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES-NAOH, PEG 4000, PH 6.3, REMARK 280 MICROBATCH, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 30390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 33.06000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 57.26160 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -33.06000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 57.26160 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A1001 LIES ON A SPECIAL POSITION. REMARK 375 NA NA B1002 LIES ON A SPECIAL POSITION. REMARK 375 NA NA C1003 LIES ON A SPECIAL POSITION. REMARK 375 NA NA D1004 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1102 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1149 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1144 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1145 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1054 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1059 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1163 LIES ON A SPECIAL POSITION. REMARK 375 HOH C1165 LIES ON A SPECIAL POSITION. REMARK 375 HOH D1137 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 MET D 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 53 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 60 -170.12 -172.25 REMARK 500 SER A 112 -174.75 174.92 REMARK 500 THR B 60 -169.96 -167.45 REMARK 500 SER B 112 -177.93 178.35 REMARK 500 THR B 123 -169.69 -116.64 REMARK 500 SER C 112 -175.01 175.59 REMARK 500 SER D 112 -176.41 176.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1001 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 130 O REMARK 620 2 ILE A 130 O 92.3 REMARK 620 3 ILE A 130 O 92.3 92.3 REMARK 620 4 HOH A1009 O 84.4 174.2 92.6 REMARK 620 5 HOH A1009 O 92.6 84.4 174.2 90.9 REMARK 620 6 HOH A1009 O 174.2 92.6 84.4 90.9 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1002 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE B 130 O REMARK 620 2 ILE B 130 O 91.5 REMARK 620 3 ILE B 130 O 91.5 91.5 REMARK 620 4 HOH B1003 O 86.9 90.6 177.3 REMARK 620 5 HOH B1003 O 177.3 86.9 90.6 91.0 REMARK 620 6 HOH B1003 O 90.6 177.3 86.9 91.0 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C1003 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE C 130 O REMARK 620 2 ILE C 130 O 90.1 REMARK 620 3 ILE C 130 O 90.1 90.1 REMARK 620 4 HOH C1005 O 84.6 94.5 173.0 REMARK 620 5 HOH C1005 O 94.5 173.0 84.6 91.1 REMARK 620 6 HOH C1005 O 173.0 84.6 94.5 91.1 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D1004 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE D 130 O REMARK 620 2 ILE D 130 O 92.1 REMARK 620 3 ILE D 130 O 92.1 92.1 REMARK 620 4 HOH D1124 O 89.1 176.4 91.3 REMARK 620 5 HOH D1124 O 91.3 89.1 176.4 87.5 REMARK 620 6 HOH D1124 O 176.4 91.3 89.1 87.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 646 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 647 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 648 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 649 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PHO001001918.1 RELATED DB: TARGETDB DBREF 2D16 A 1 162 UNP O59581 O59581_PYRHO 1 162 DBREF 2D16 B 1 162 UNP O59581 O59581_PYRHO 1 162 DBREF 2D16 C 1 162 UNP O59581 O59581_PYRHO 1 162 DBREF 2D16 D 1 162 UNP O59581 O59581_PYRHO 1 162 SEQRES 1 A 162 MET VAL ARG ILE GLU VAL ILE ASP ILE GLU LYS PRO GLU SEQRES 2 A 162 GLY VAL GLU VAL ILE ILE GLY GLN GLY ASN PHE SER ILE SEQRES 3 A 162 PHE THR VAL ASP ASP LEU ALA ARG ALA LEU LEU THR ALA SEQRES 4 A 162 VAL PRO GLY ILE LYS PHE GLY ILE ALA MET ASN GLU ALA SEQRES 5 A 162 LYS PRO GLN LEU THR ARG TYR THR GLY ASN ASP PRO GLU SEQRES 6 A 162 LEU GLU ALA LEU ALA ALA LYS ASN ALA VAL LYS ILE GLY SEQRES 7 A 162 ALA GLY HIS VAL PHE VAL ILE LEU MET LYS ASN ALA TYR SEQRES 8 A 162 PRO ILE ASN VAL LEU ASN THR ILE LYS ASN HIS PRO ALA SEQRES 9 A 162 VAL ALA MET ILE TYR GLY ALA SER GLU ASN PRO PHE GLN SEQRES 10 A 162 VAL ILE VAL ALA GLU THR GLU LEU GLY ARG ALA VAL ILE SEQRES 11 A 162 GLY VAL VAL ASP GLY LYS ALA ALA ASN LYS ILE GLU THR SEQRES 12 A 162 ASP GLU GLN LYS LYS GLU ARG ARG GLU LEU VAL GLU LYS SEQRES 13 A 162 ILE GLY TYR LYS ILE ASP SEQRES 1 B 162 MET VAL ARG ILE GLU VAL ILE ASP ILE GLU LYS PRO GLU SEQRES 2 B 162 GLY VAL GLU VAL ILE ILE GLY GLN GLY ASN PHE SER ILE SEQRES 3 B 162 PHE THR VAL ASP ASP LEU ALA ARG ALA LEU LEU THR ALA SEQRES 4 B 162 VAL PRO GLY ILE LYS PHE GLY ILE ALA MET ASN GLU ALA SEQRES 5 B 162 LYS PRO GLN LEU THR ARG TYR THR GLY ASN ASP PRO GLU SEQRES 6 B 162 LEU GLU ALA LEU ALA ALA LYS ASN ALA VAL LYS ILE GLY SEQRES 7 B 162 ALA GLY HIS VAL PHE VAL ILE LEU MET LYS ASN ALA TYR SEQRES 8 B 162 PRO ILE ASN VAL LEU ASN THR ILE LYS ASN HIS PRO ALA SEQRES 9 B 162 VAL ALA MET ILE TYR GLY ALA SER GLU ASN PRO PHE GLN SEQRES 10 B 162 VAL ILE VAL ALA GLU THR GLU LEU GLY ARG ALA VAL ILE SEQRES 11 B 162 GLY VAL VAL ASP GLY LYS ALA ALA ASN LYS ILE GLU THR SEQRES 12 B 162 ASP GLU GLN LYS LYS GLU ARG ARG GLU LEU VAL GLU LYS SEQRES 13 B 162 ILE GLY TYR LYS ILE ASP SEQRES 1 C 162 MET VAL ARG ILE GLU VAL ILE ASP ILE GLU LYS PRO GLU SEQRES 2 C 162 GLY VAL GLU VAL ILE ILE GLY GLN GLY ASN PHE SER ILE SEQRES 3 C 162 PHE THR VAL ASP ASP LEU ALA ARG ALA LEU LEU THR ALA SEQRES 4 C 162 VAL PRO GLY ILE LYS PHE GLY ILE ALA MET ASN GLU ALA SEQRES 5 C 162 LYS PRO GLN LEU THR ARG TYR THR GLY ASN ASP PRO GLU SEQRES 6 C 162 LEU GLU ALA LEU ALA ALA LYS ASN ALA VAL LYS ILE GLY SEQRES 7 C 162 ALA GLY HIS VAL PHE VAL ILE LEU MET LYS ASN ALA TYR SEQRES 8 C 162 PRO ILE ASN VAL LEU ASN THR ILE LYS ASN HIS PRO ALA SEQRES 9 C 162 VAL ALA MET ILE TYR GLY ALA SER GLU ASN PRO PHE GLN SEQRES 10 C 162 VAL ILE VAL ALA GLU THR GLU LEU GLY ARG ALA VAL ILE SEQRES 11 C 162 GLY VAL VAL ASP GLY LYS ALA ALA ASN LYS ILE GLU THR SEQRES 12 C 162 ASP GLU GLN LYS LYS GLU ARG ARG GLU LEU VAL GLU LYS SEQRES 13 C 162 ILE GLY TYR LYS ILE ASP SEQRES 1 D 162 MET VAL ARG ILE GLU VAL ILE ASP ILE GLU LYS PRO GLU SEQRES 2 D 162 GLY VAL GLU VAL ILE ILE GLY GLN GLY ASN PHE SER ILE SEQRES 3 D 162 PHE THR VAL ASP ASP LEU ALA ARG ALA LEU LEU THR ALA SEQRES 4 D 162 VAL PRO GLY ILE LYS PHE GLY ILE ALA MET ASN GLU ALA SEQRES 5 D 162 LYS PRO GLN LEU THR ARG TYR THR GLY ASN ASP PRO GLU SEQRES 6 D 162 LEU GLU ALA LEU ALA ALA LYS ASN ALA VAL LYS ILE GLY SEQRES 7 D 162 ALA GLY HIS VAL PHE VAL ILE LEU MET LYS ASN ALA TYR SEQRES 8 D 162 PRO ILE ASN VAL LEU ASN THR ILE LYS ASN HIS PRO ALA SEQRES 9 D 162 VAL ALA MET ILE TYR GLY ALA SER GLU ASN PRO PHE GLN SEQRES 10 D 162 VAL ILE VAL ALA GLU THR GLU LEU GLY ARG ALA VAL ILE SEQRES 11 D 162 GLY VAL VAL ASP GLY LYS ALA ALA ASN LYS ILE GLU THR SEQRES 12 D 162 ASP GLU GLN LYS LYS GLU ARG ARG GLU LEU VAL GLU LYS SEQRES 13 D 162 ILE GLY TYR LYS ILE ASP HET NA A1001 1 HET GOL A 646 6 HET NA B1002 1 HET GOL B 647 6 HET NA C1003 1 HET GOL C 648 6 HET NA D1004 1 HET GOL D 649 6 HETNAM NA SODIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NA 4(NA 1+) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 13 HOH *596(H2 O) HELIX 1 1 PHE A 24 VAL A 40 1 17 HELIX 2 2 ASP A 63 GLY A 78 1 16 HELIX 3 3 TYR A 91 ASN A 101 1 11 HELIX 4 4 THR A 143 GLY A 158 1 16 HELIX 5 5 PHE B 24 VAL B 40 1 17 HELIX 6 6 ASP B 63 GLY B 78 1 16 HELIX 7 7 TYR B 91 ASN B 101 1 11 HELIX 8 8 THR B 143 GLY B 158 1 16 HELIX 9 9 PHE C 24 VAL C 40 1 17 HELIX 10 10 ASP C 63 GLY C 78 1 16 HELIX 11 11 TYR C 91 ASN C 101 1 11 HELIX 12 12 THR C 143 GLY C 158 1 16 HELIX 13 13 PHE D 24 VAL D 40 1 17 HELIX 14 14 ASP D 63 GLY D 78 1 16 HELIX 15 15 TYR D 91 ASN D 101 1 11 HELIX 16 16 THR D 143 GLY D 158 1 16 SHEET 1 A 3 ARG A 3 ASP A 8 0 SHEET 2 A 3 PHE A 116 GLU A 122 -1 O VAL A 120 N GLU A 5 SHEET 3 A 3 ARG A 127 ASP A 134 -1 O GLY A 131 N ILE A 119 SHEET 1 B 5 LEU A 56 GLY A 61 0 SHEET 2 B 5 LYS A 44 GLU A 51 -1 N GLU A 51 O LEU A 56 SHEET 3 B 5 VAL A 82 LYS A 88 -1 O VAL A 84 N ALA A 48 SHEET 4 B 5 GLU A 16 GLY A 22 -1 N ILE A 18 O ILE A 85 SHEET 5 B 5 VAL A 105 SER A 112 -1 O SER A 112 N VAL A 17 SHEET 1 C 3 ARG B 3 ASP B 8 0 SHEET 2 C 3 PHE B 116 GLU B 122 -1 O VAL B 120 N GLU B 5 SHEET 3 C 3 ARG B 127 ASP B 134 -1 O ALA B 128 N ALA B 121 SHEET 1 D 5 LEU B 56 GLY B 61 0 SHEET 2 D 5 LYS B 44 GLU B 51 -1 N GLU B 51 O LEU B 56 SHEET 3 D 5 VAL B 82 LYS B 88 -1 O VAL B 84 N ALA B 48 SHEET 4 D 5 GLU B 16 GLY B 22 -1 N ILE B 18 O ILE B 85 SHEET 5 D 5 VAL B 105 SER B 112 -1 O SER B 112 N VAL B 17 SHEET 1 E 3 ARG C 3 ASP C 8 0 SHEET 2 E 3 PHE C 116 GLU C 122 -1 O VAL C 120 N GLU C 5 SHEET 3 E 3 ARG C 127 ASP C 134 -1 O GLY C 131 N ILE C 119 SHEET 1 F 5 LEU C 56 GLY C 61 0 SHEET 2 F 5 LYS C 44 GLU C 51 -1 N GLU C 51 O LEU C 56 SHEET 3 F 5 VAL C 82 LYS C 88 -1 O VAL C 84 N ALA C 48 SHEET 4 F 5 GLU C 16 GLY C 22 -1 N ILE C 18 O ILE C 85 SHEET 5 F 5 VAL C 105 SER C 112 -1 O SER C 112 N VAL C 17 SHEET 1 G 3 ARG D 3 ASP D 8 0 SHEET 2 G 3 PHE D 116 GLU D 122 -1 O VAL D 120 N GLU D 5 SHEET 3 G 3 ARG D 127 ASP D 134 -1 O ALA D 128 N ALA D 121 SHEET 1 H 5 LEU D 56 GLY D 61 0 SHEET 2 H 5 LYS D 44 GLU D 51 -1 N GLU D 51 O LEU D 56 SHEET 3 H 5 VAL D 82 LYS D 88 -1 O VAL D 84 N ALA D 48 SHEET 4 H 5 GLU D 16 GLY D 22 -1 N ILE D 18 O ILE D 85 SHEET 5 H 5 VAL D 105 SER D 112 -1 O SER D 112 N VAL D 17 LINK O ILE A 130 NA NA A1001 1555 1555 2.43 LINK O ILE A 130 NA NA A1001 2555 1555 2.43 LINK O ILE A 130 NA NA A1001 3555 1555 2.43 LINK NA NA A1001 O HOH A1009 1555 1555 2.41 LINK NA NA A1001 O HOH A1009 1555 2555 2.41 LINK NA NA A1001 O HOH A1009 1555 3555 2.41 LINK O ILE B 130 NA NA B1002 1555 1555 2.42 LINK O ILE B 130 NA NA B1002 2555 1555 2.42 LINK O ILE B 130 NA NA B1002 3555 1555 2.42 LINK NA NA B1002 O HOH B1003 1555 1555 2.45 LINK NA NA B1002 O HOH B1003 1555 2555 2.45 LINK NA NA B1002 O HOH B1003 1555 3555 2.45 LINK O ILE C 130 NA NA C1003 1555 1555 2.50 LINK O ILE C 130 NA NA C1003 3565 1555 2.50 LINK O ILE C 130 NA NA C1003 2665 1555 2.50 LINK NA NA C1003 O HOH C1005 1555 1555 2.36 LINK NA NA C1003 O HOH C1005 1555 2665 2.36 LINK NA NA C1003 O HOH C1005 1555 3565 2.36 LINK O ILE D 130 NA NA D1004 1555 1555 2.40 LINK O ILE D 130 NA NA D1004 3565 1555 2.40 LINK O ILE D 130 NA NA D1004 2665 1555 2.40 LINK NA NA D1004 O HOH D1124 1555 1555 2.44 LINK NA NA D1004 O HOH D1124 1555 3565 2.44 LINK NA NA D1004 O HOH D1124 1555 2665 2.44 SITE 1 AC1 2 ILE A 130 HOH A1009 SITE 1 AC2 2 ILE B 130 HOH B1003 SITE 1 AC3 2 ILE C 130 HOH C1005 SITE 1 AC4 2 ILE D 130 HOH D1124 SITE 1 AC5 6 LEU A 37 VAL A 40 PRO A 41 GLY A 42 SITE 2 AC5 6 HOH A1021 TYR B 159 SITE 1 AC6 6 ILE A 157 LEU B 37 VAL B 40 PRO B 41 SITE 2 AC6 6 GLY B 42 HOH B1007 SITE 1 AC7 7 LEU C 37 VAL C 40 PRO C 41 GLY C 42 SITE 2 AC7 7 HOH C1019 HOH C1132 TYR D 159 SITE 1 AC8 6 TYR C 159 LEU D 37 VAL D 40 PRO D 41 SITE 2 AC8 6 GLY D 42 HOH D1011 CRYST1 66.120 66.120 125.072 90.00 90.00 120.00 P 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015124 0.008732 0.000000 0.00000 SCALE2 0.000000 0.017464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007995 0.00000