data_2D19 # _entry.id 2D19 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D19 pdb_00002d19 10.2210/pdb2d19/pdb RCSB RCSB024862 ? ? WWPDB D_1000024862 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 5 'Structure model' 1 4 2024-05-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 5 'Structure model' chem_comp_atom 6 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D19 _pdbx_database_status.recvd_initial_deposition_date 2005-08-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D17 'Solution structure of stem-bulge-stem region of DIS' unspecified PDB 2D18 'Solution structure of loop region of the extended-duplex dimer' unspecified PDB 2D1A 'Solution structure model of the extended-duplex dimer' unspecified PDB 2D1B 'Solution structure models of the kissing-loop dimer' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baba, S.' 1 'Takahashi, K.' 2 'Noguchi, S.' 3 'Takaku, H.' 4 'Koyanagi, Y.' 5 'Yamamoto, N.' 6 'Kawai, G.' 7 # _citation.id primary _citation.title 'Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.' _citation.journal_abbrev 'J.Biochem.(Tokyo)' _citation.journal_volume 138 _citation.page_first 583 _citation.page_last 592 _citation.year 2005 _citation.journal_id_ASTM JOBIAO _citation.country JA _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD 0418 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16272570 _citation.pdbx_database_id_DOI 10.1093/jb/mvi158 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baba, S.' 1 ? primary 'Takahashi, K.' 2 ? primary 'Noguchi, S.' 3 ? primary 'Takaku, H.' 4 ? primary 'Koyanagi, Y.' 5 ? primary 'Yamamoto, N.' 6 ? primary 'Kawai, G.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*CP*UP*GP*AP*AP*GP*UP*GP*CP*AP*CP*AP*CP*GP*GP*C)-3'" _entity.formula_weight 5481.341 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCUGAAGUGCACACGGC _entity_poly.pdbx_seq_one_letter_code_can GCUGAAGUGCACACGGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 U n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 U n 1 9 G n 1 10 C n 1 11 A n 1 12 C n 1 13 A n 1 14 C n 1 15 G n 1 16 G n 1 17 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 U 3 3 3 U U A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 A 13 13 13 A A A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 C 17 17 17 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 C 2 2 2 C C B . n B 1 3 U 3 3 3 U U B . n B 1 4 G 4 4 4 G G B . n B 1 5 A 5 5 5 A A B . n B 1 6 A 6 6 6 A A B . n B 1 7 G 7 7 7 G G B . n B 1 8 U 8 8 8 U U B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n B 1 11 A 11 11 11 A A B . n B 1 12 C 12 12 12 C C B . n B 1 13 A 13 13 13 A A B . n B 1 14 C 14 14 14 C C B . n B 1 15 G 15 15 15 G G B . n B 1 16 G 16 16 16 G G B . n B 1 17 C 17 17 17 C C B . n # _exptl.entry_id 2D19 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2D19 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2D19 _struct.title 'Solution RNA structure of loop region of the HIV-1 dimerization initiation site in the kissing-loop dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2D19 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'DIS, HIV-1, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2D19 _struct_ref.pdbx_db_accession 2D19 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2D19 A 1 ? 17 ? 2D19 1 ? 17 ? 1 17 2 1 2D19 B 1 ? 17 ? 2D19 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 1 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 16 N1 ? ? A C 2 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 16 O6 ? ? A C 2 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 16 N2 ? ? A C 2 A G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 15 O6 ? ? A U 3 A G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 15 N1 ? ? A U 3 A G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 14 N3 ? ? A G 4 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 14 O2 ? ? A G 4 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 14 N4 ? ? A G 4 A C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 7 N7 ? ? ? 1_555 B A 6 N6 ? ? A G 7 B A 6 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog13 hydrog ? ? A G 7 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 7 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 7 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 7 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 8 N3 ? ? ? 1_555 B A 11 N1 ? ? A U 8 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 8 O4 ? ? ? 1_555 B A 11 N6 ? ? A U 8 B A 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 9 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 10 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 11 N1 ? ? ? 1_555 B U 8 N3 ? ? A A 11 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A A 11 N6 ? ? ? 1_555 B U 8 O4 ? ? A A 11 B U 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 7 N1 ? ? A C 12 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 7 O6 ? ? A C 12 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 7 N2 ? ? A C 12 B G 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 17 N3 ? ? B G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 17 O2 ? ? B G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 17 N4 ? ? B G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 16 N1 ? ? B C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 16 O6 ? ? B C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 16 N2 ? ? B C 2 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? B U 3 N3 ? ? ? 1_555 B G 15 O6 ? ? B U 3 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? B U 3 O2 ? ? ? 1_555 B G 15 N1 ? ? B U 3 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? B G 4 N1 ? ? ? 1_555 B C 14 N3 ? ? B G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? B G 4 N2 ? ? ? 1_555 B C 14 O2 ? ? B G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? B G 4 O6 ? ? ? 1_555 B C 14 N4 ? ? B G 4 B C 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? B A 5 N1 ? ? ? 1_555 B A 13 N6 ? ? B A 5 B A 13 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog41 hydrog ? ? B A 5 N6 ? ? ? 1_555 B A 13 N1 ? ? B A 5 B A 13 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.81 108.50 5.31 0.70 N 2 1 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.08 108.50 6.58 0.70 N 3 1 "O4'" A A 5 ? ? "C1'" A A 5 ? ? N9 A A 5 ? ? 113.10 108.50 4.60 0.70 N 4 1 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.97 108.50 5.47 0.70 N 5 1 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.44 108.50 6.94 0.70 N 6 1 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.55 108.50 9.05 0.70 N 7 1 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.10 108.50 4.60 0.70 N 8 1 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 114.70 108.50 6.20 0.70 N 9 1 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.96 108.50 4.46 0.70 N 10 1 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.45 108.50 4.95 0.70 N 11 1 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.09 108.50 6.59 0.70 N 12 1 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.43 108.50 4.93 0.70 N 13 1 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.91 108.50 6.41 0.70 N 14 1 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.75 108.50 8.25 0.70 N 15 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.87 108.50 4.37 0.70 N 16 1 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.57 108.50 5.07 0.70 N 17 1 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 113.06 108.50 4.56 0.70 N 18 2 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.33 108.50 5.83 0.70 N 19 2 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.25 108.50 6.75 0.70 N 20 2 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.96 108.50 5.46 0.70 N 21 2 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 114.10 108.50 5.60 0.70 N 22 2 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 116.55 108.50 8.05 0.70 N 23 2 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.82 108.50 5.32 0.70 N 24 2 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 112.92 108.50 4.42 0.70 N 25 2 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.48 108.50 4.98 0.70 N 26 2 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.76 108.50 4.26 0.70 N 27 2 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 114.13 108.50 5.63 0.70 N 28 2 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.25 108.50 6.75 0.70 N 29 2 "O4'" B G 7 ? ? "C1'" B G 7 ? ? N9 B G 7 ? ? 115.58 108.50 7.08 0.70 N 30 2 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.74 108.50 5.24 0.70 N 31 2 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 115.37 108.50 6.87 0.70 N 32 2 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 117.03 108.50 8.53 0.70 N 33 2 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.37 108.50 4.87 0.70 N 34 2 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.74 108.50 4.24 0.70 N 35 2 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.97 108.50 4.47 0.70 N 36 2 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 113.03 108.50 4.53 0.70 N 37 3 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.90 108.50 5.40 0.70 N 38 3 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.25 108.50 6.75 0.70 N 39 3 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 115.82 108.50 7.32 0.70 N 40 3 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.76 108.50 5.26 0.70 N 41 3 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.16 108.50 6.66 0.70 N 42 3 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.17 108.50 8.67 0.70 N 43 3 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.58 108.50 5.08 0.70 N 44 3 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.19 108.50 4.69 0.70 N 45 3 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.02 108.50 4.52 0.70 N 46 3 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 114.24 108.50 5.74 0.70 N 47 3 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.16 108.50 6.66 0.70 N 48 3 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.32 108.50 4.82 0.70 N 49 3 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.40 108.50 5.90 0.70 N 50 3 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.48 108.50 7.98 0.70 N 51 3 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.85 108.50 5.35 0.70 N 52 3 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.95 108.50 4.45 0.70 N 53 3 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.60 108.50 5.10 0.70 N 54 3 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 112.78 108.50 4.28 0.70 N 55 4 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.34 108.50 5.84 0.70 N 56 4 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.38 108.50 6.88 0.70 N 57 4 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.69 108.50 5.19 0.70 N 58 4 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 114.63 108.50 6.13 0.70 N 59 4 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 116.84 108.50 8.34 0.70 N 60 4 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.40 108.50 4.90 0.70 N 61 4 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.33 108.50 4.83 0.70 N 62 4 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.85 108.50 4.35 0.70 N 63 4 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.54 108.50 5.04 0.70 N 64 4 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.04 108.50 6.54 0.70 N 65 4 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 114.23 108.50 5.73 0.70 N 66 4 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.24 108.50 5.74 0.70 N 67 4 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 117.05 108.50 8.55 0.70 N 68 4 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.81 108.50 4.31 0.70 N 69 4 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.99 108.50 4.49 0.70 N 70 4 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 114.37 108.50 5.87 0.70 N 71 4 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 113.09 108.50 4.59 0.70 N 72 5 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.14 108.50 5.64 0.70 N 73 5 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.10 108.50 6.60 0.70 N 74 5 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.65 108.50 5.15 0.70 N 75 5 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 113.98 108.50 5.48 0.70 N 76 5 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.36 108.50 8.86 0.70 N 77 5 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.40 108.50 4.90 0.70 N 78 5 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 112.76 108.50 4.26 0.70 N 79 5 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.00 108.50 4.50 0.70 N 80 5 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.52 108.50 5.02 0.70 N 81 5 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.21 108.50 6.71 0.70 N 82 5 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 112.94 108.50 4.44 0.70 N 83 5 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.17 108.50 5.67 0.70 N 84 5 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.89 108.50 8.39 0.70 N 85 5 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.10 108.50 4.60 0.70 N 86 5 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 113.38 108.50 4.88 0.70 N 87 5 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.78 108.50 5.28 0.70 N 88 5 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 112.89 108.50 4.39 0.70 N 89 6 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.85 108.50 5.35 0.70 N 90 6 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.28 108.50 6.78 0.70 N 91 6 "O4'" A A 5 ? ? "C1'" A A 5 ? ? N9 A A 5 ? ? 114.20 108.50 5.70 0.70 N 92 6 "O4'" A G 7 ? ? "C1'" A G 7 ? ? N9 A G 7 ? ? 114.24 108.50 5.74 0.70 N 93 6 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.63 108.50 5.13 0.70 N 94 6 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.21 108.50 6.71 0.70 N 95 6 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.11 108.50 8.61 0.70 N 96 6 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.33 108.50 4.83 0.70 N 97 6 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 113.82 108.50 5.32 0.70 N 98 6 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 114.65 108.50 6.15 0.70 N 99 6 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.01 108.50 4.51 0.70 N 100 6 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.94 108.50 5.44 0.70 N 101 6 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.06 108.50 6.56 0.70 N 102 6 "O4'" B G 7 ? ? "C1'" B G 7 ? ? N9 B G 7 ? ? 115.93 108.50 7.43 0.70 N 103 6 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.62 108.50 5.12 0.70 N 104 6 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 115.06 108.50 6.56 0.70 N 105 6 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.88 108.50 8.38 0.70 N 106 6 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 112.97 108.50 4.47 0.70 N 107 6 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.35 108.50 4.85 0.70 N 108 6 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 112.87 108.50 4.37 0.70 N 109 7 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.86 108.50 5.36 0.70 N 110 7 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.46 108.50 5.96 0.70 N 111 7 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.52 108.50 5.02 0.70 N 112 7 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.74 108.50 7.24 0.70 N 113 7 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.79 108.50 9.29 0.70 N 114 7 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.60 108.50 5.10 0.70 N 115 7 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.95 108.50 4.45 0.70 N 116 7 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.61 108.50 5.11 0.70 N 117 7 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.33 108.50 6.83 0.70 N 118 7 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.65 108.50 5.15 0.70 N 119 7 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.68 108.50 6.18 0.70 N 120 7 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.77 108.50 8.27 0.70 N 121 7 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.53 108.50 5.03 0.70 N 122 7 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.87 108.50 4.37 0.70 N 123 7 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 114.06 108.50 5.56 0.70 N 124 7 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 113.19 108.50 4.69 0.70 N 125 8 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.82 108.50 5.32 0.70 N 126 8 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 114.99 108.50 6.49 0.70 N 127 8 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 114.09 108.50 5.59 0.70 N 128 8 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.58 108.50 7.08 0.70 N 129 8 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.47 108.50 8.97 0.70 N 130 8 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.36 108.50 4.86 0.70 N 131 8 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.12 108.50 4.62 0.70 N 132 8 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.46 108.50 4.96 0.70 N 133 8 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.18 108.50 6.68 0.70 N 134 8 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.43 108.50 4.93 0.70 N 135 8 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.75 108.50 6.25 0.70 N 136 8 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.46 108.50 7.96 0.70 N 137 8 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.28 108.50 4.78 0.70 N 138 8 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.99 108.50 5.49 0.70 N 139 8 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 113.00 108.50 4.50 0.70 N 140 9 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.54 108.50 6.04 0.70 N 141 9 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.28 108.50 6.78 0.70 N 142 9 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.45 108.50 4.95 0.70 N 143 9 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.62 108.50 7.12 0.70 N 144 9 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.32 108.50 8.82 0.70 N 145 9 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.23 108.50 4.73 0.70 N 146 9 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 113.42 108.50 4.92 0.70 N 147 9 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 114.45 108.50 5.95 0.70 N 148 9 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.73 108.50 4.23 0.70 N 149 9 "O4'" B G 1 ? ? "C1'" B G 1 ? ? N9 B G 1 ? ? 116.24 108.50 7.74 0.70 N 150 9 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.51 108.50 5.01 0.70 N 151 9 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 114.37 108.50 5.87 0.70 N 152 9 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.96 108.50 5.46 0.70 N 153 9 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.12 108.50 5.62 0.70 N 154 9 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 117.03 108.50 8.53 0.70 N 155 9 "O4'" B A 13 ? ? "C1'" B A 13 ? ? N9 B A 13 ? ? 112.90 108.50 4.40 0.70 N 156 9 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.92 108.50 5.42 0.70 N 157 9 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 113.03 108.50 4.53 0.70 N 158 10 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 113.44 108.50 4.94 0.70 N 159 10 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.20 108.50 6.70 0.70 N 160 10 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 114.00 108.50 5.50 0.70 N 161 10 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.29 108.50 6.79 0.70 N 162 10 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.46 108.50 8.96 0.70 N 163 10 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.09 108.50 4.59 0.70 N 164 10 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 113.99 108.50 5.49 0.70 N 165 10 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.07 108.50 4.57 0.70 N 166 10 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.37 108.50 4.87 0.70 N 167 10 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.34 108.50 6.84 0.70 N 168 10 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.46 108.50 4.96 0.70 N 169 10 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 114.78 108.50 6.28 0.70 N 170 10 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 117.23 108.50 8.73 0.70 N 171 10 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 112.88 108.50 4.38 0.70 N 172 10 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 112.99 108.50 4.49 0.70 N 173 11 "O4'" A C 2 ? ? "C1'" A C 2 ? ? N1 A C 2 ? ? 114.29 108.50 5.79 0.70 N 174 11 "O4'" A U 3 ? ? "C1'" A U 3 ? ? N1 A U 3 ? ? 115.33 108.50 6.83 0.70 N 175 11 "O4'" A U 8 ? ? "C1'" A U 8 ? ? N1 A U 8 ? ? 113.63 108.50 5.13 0.70 N 176 11 "O4'" A C 10 ? ? "C1'" A C 10 ? ? N1 A C 10 ? ? 115.58 108.50 7.08 0.70 N 177 11 "O4'" A A 11 ? ? "C1'" A A 11 ? ? N9 A A 11 ? ? 117.64 108.50 9.14 0.70 N 178 11 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.16 108.50 4.66 0.70 N 179 11 "O4'" A C 14 ? ? "C1'" A C 14 ? ? N1 A C 14 ? ? 112.85 108.50 4.35 0.70 N 180 11 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.73 108.50 4.23 0.70 N 181 11 "O4'" B C 2 ? ? "C1'" B C 2 ? ? N1 B C 2 ? ? 113.56 108.50 5.06 0.70 N 182 11 "O4'" B U 3 ? ? "C1'" B U 3 ? ? N1 B U 3 ? ? 115.07 108.50 6.57 0.70 N 183 11 "O4'" B U 8 ? ? "C1'" B U 8 ? ? N1 B U 8 ? ? 113.34 108.50 4.84 0.70 N 184 11 "O4'" B C 10 ? ? "C1'" B C 10 ? ? N1 B C 10 ? ? 115.00 108.50 6.50 0.70 N 185 11 "O4'" B A 11 ? ? "C1'" B A 11 ? ? N9 B A 11 ? ? 116.94 108.50 8.44 0.70 N 186 11 "O4'" B C 14 ? ? "C1'" B C 14 ? ? N1 B C 14 ? ? 113.61 108.50 5.11 0.70 N 187 11 "O4'" B C 17 ? ? "C1'" B C 17 ? ? N1 B C 17 ? ? 113.03 108.50 4.53 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 6 ? ? 0.067 'SIDE CHAIN' 2 1 A A 11 ? ? 0.071 'SIDE CHAIN' 3 1 U B 3 ? ? 0.063 'SIDE CHAIN' 4 1 A B 5 ? ? 0.056 'SIDE CHAIN' 5 1 G B 9 ? ? 0.067 'SIDE CHAIN' 6 1 A B 11 ? ? 0.070 'SIDE CHAIN' 7 2 A A 5 ? ? 0.061 'SIDE CHAIN' 8 2 G A 7 ? ? 0.071 'SIDE CHAIN' 9 2 U B 8 ? ? 0.065 'SIDE CHAIN' 10 3 U A 8 ? ? 0.062 'SIDE CHAIN' 11 3 C A 14 ? ? 0.070 'SIDE CHAIN' 12 3 A B 5 ? ? 0.098 'SIDE CHAIN' 13 3 G B 9 ? ? 0.065 'SIDE CHAIN' 14 4 G A 4 ? ? 0.063 'SIDE CHAIN' 15 4 G A 9 ? ? 0.058 'SIDE CHAIN' 16 4 G B 1 ? ? 0.054 'SIDE CHAIN' 17 4 U B 3 ? ? 0.068 'SIDE CHAIN' 18 4 A B 5 ? ? 0.090 'SIDE CHAIN' 19 4 A B 11 ? ? 0.068 'SIDE CHAIN' 20 4 C B 14 ? ? 0.088 'SIDE CHAIN' 21 5 U B 3 ? ? 0.062 'SIDE CHAIN' 22 5 G B 7 ? ? 0.095 'SIDE CHAIN' 23 5 C B 14 ? ? 0.069 'SIDE CHAIN' 24 6 A A 5 ? ? 0.096 'SIDE CHAIN' 25 6 U A 8 ? ? 0.058 'SIDE CHAIN' 26 6 C A 14 ? ? 0.079 'SIDE CHAIN' 27 6 G B 1 ? ? 0.053 'SIDE CHAIN' 28 6 A B 5 ? ? 0.077 'SIDE CHAIN' 29 7 G A 7 ? ? 0.067 'SIDE CHAIN' 30 7 C A 10 ? ? 0.058 'SIDE CHAIN' 31 7 A A 11 ? ? 0.068 'SIDE CHAIN' 32 7 G B 9 ? ? 0.056 'SIDE CHAIN' 33 8 A A 11 ? ? 0.076 'SIDE CHAIN' 34 8 C A 14 ? ? 0.061 'SIDE CHAIN' 35 8 G B 1 ? ? 0.052 'SIDE CHAIN' 36 8 U B 3 ? ? 0.076 'SIDE CHAIN' 37 8 A B 5 ? ? 0.073 'SIDE CHAIN' 38 8 G B 9 ? ? 0.060 'SIDE CHAIN' 39 8 C B 14 ? ? 0.067 'SIDE CHAIN' 40 9 C A 10 ? ? 0.063 'SIDE CHAIN' 41 9 A B 5 ? ? 0.101 'SIDE CHAIN' 42 9 G B 9 ? ? 0.052 'SIDE CHAIN' 43 9 A B 11 ? ? 0.070 'SIDE CHAIN' 44 9 C B 14 ? ? 0.069 'SIDE CHAIN' 45 10 G A 1 ? ? 0.056 'SIDE CHAIN' 46 10 U A 3 ? ? 0.066 'SIDE CHAIN' 47 10 A A 5 ? ? 0.058 'SIDE CHAIN' 48 10 A A 11 ? ? 0.070 'SIDE CHAIN' 49 10 C A 14 ? ? 0.067 'SIDE CHAIN' 50 10 U B 3 ? ? 0.061 'SIDE CHAIN' 51 10 G B 9 ? ? 0.074 'SIDE CHAIN' 52 10 A B 11 ? ? 0.073 'SIDE CHAIN' 53 11 G A 4 ? ? 0.062 'SIDE CHAIN' 54 11 A A 5 ? ? 0.072 'SIDE CHAIN' 55 11 C A 10 ? ? 0.057 'SIDE CHAIN' 56 11 C A 14 ? ? 0.063 'SIDE CHAIN' 57 11 A B 5 ? ? 0.074 'SIDE CHAIN' 58 11 A B 6 ? ? 0.052 'SIDE CHAIN' 59 11 G B 9 ? ? 0.072 'SIDE CHAIN' 60 11 A B 11 ? ? 0.069 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 2D19 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D19 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 2 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '0.3mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 4 '0.3mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 5 '0.1mM [A-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 6 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 7 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 ambient 7.0 '50mM NaCl' . K 2 298 ambient 7.0 '50mM NaCl' . K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 2 2 1 '1D-HSQC-selected spectrum' 4 3 1 '1D-HSQC-filtered spectrum' 4 4 1 '2D NOESY' 7 5 2 '2D TOCSY' 1 6 2 '2D NOESY' 1 7 2 '2D-w2-filtered NOESY' 3 8 2 '2D-w2-filtered NOESY' 5 9 2 '2D TOCSY' 6 10 2 '2D NOESY' 6 # _pdbx_nmr_details.entry_id 2D19 _pdbx_nmr_details.text ;Chemical synthesized 25-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized [G-13C/15N] labeled 39-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized [A-13C/15N] labeled 39-mer RNA corresponding to the HIV-1 dimerization initiation site. Enzymatical synthesized 39-mer RNA corresponding to the HIV-1 dimerization initiation site. ; # _pdbx_nmr_refine.entry_id 2D19 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structures are based on a total of 502 restraints, 286 are NOE-derived distance constraints, 140 dihedral angle restraints, 76 distance restraints from hydrogen bonds. ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing XwinNMR 2.6 BRUKER 1 'data analysis' Felix 97.0 'Molecular Simulations' 2 'structure solution' Discover 97.0 Accelrys 3 refinement Discover 97.0 Accelrys 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2D19 'double helix' 2D19 'a-form double helix' 2D19 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 17 1_555 -0.849 -0.252 0.747 12.411 -6.752 -3.343 1 A_G1:C17_A A 1 ? A 17 ? 19 1 1 A C 2 1_555 A G 16 1_555 0.642 -0.197 0.530 -0.209 -6.870 -3.389 2 A_C2:G16_A A 2 ? A 16 ? 19 1 1 A U 3 1_555 A G 15 1_555 1.748 -0.375 0.348 -1.818 -13.922 -1.942 3 A_U3:G15_A A 3 ? A 15 ? 28 1 1 A G 4 1_555 A C 14 1_555 -1.025 -0.150 -0.224 -4.368 8.556 0.471 4 A_G4:C14_A A 4 ? A 14 ? 19 1 1 B G 1 1_555 B C 17 1_555 -0.896 -0.300 0.759 12.604 -8.470 -4.381 5 B_G1:C17_B B 1 ? B 17 ? 19 1 1 B C 2 1_555 B G 16 1_555 0.565 -0.161 0.555 -1.337 -7.063 -3.140 6 B_C2:G16_B B 2 ? B 16 ? 19 1 1 B U 3 1_555 B G 15 1_555 1.626 -0.344 0.353 -1.817 -10.625 -0.156 7 B_U3:G15_B B 3 ? B 15 ? 28 1 1 B G 4 1_555 B C 14 1_555 -1.090 -0.236 0.113 -8.892 -4.802 -0.757 8 B_G4:C14_B B 4 ? B 14 ? 19 1 1 B A 5 1_555 B A 13 1_555 1.468 0.447 -0.681 -35.908 -14.843 -178.104 9 B_A5:A13_B B 5 ? B 13 ? 1 2 1 A G 7 1_555 B C 12 1_555 0.154 0.002 0.348 5.999 -17.672 0.397 10 A_G7:C12_B A 7 ? B 12 ? 19 1 1 A U 8 1_555 B A 11 1_555 -0.783 0.003 0.658 -2.232 -13.645 1.273 11 A_U8:A11_B A 8 ? B 11 ? 20 1 1 A G 9 1_555 B C 10 1_555 0.830 -0.025 0.216 -4.030 -9.901 -9.169 12 A_G9:C10_B A 9 ? B 10 ? 19 1 1 A C 10 1_555 B G 9 1_555 -0.933 -0.101 0.436 4.552 -11.182 -10.209 13 A_C10:G9_B A 10 ? B 9 ? 19 1 1 A A 11 1_555 B U 8 1_555 0.814 0.030 0.522 3.281 -12.119 3.029 14 A_A11:U8_B A 11 ? B 8 ? 20 1 1 A C 12 1_555 B G 7 1_555 0.747 -0.187 0.156 -7.902 -18.066 1.615 15 A_C12:G7_B A 12 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 17 1_555 A C 2 1_555 A G 16 1_555 -0.018 -1.883 3.454 0.242 0.833 39.413 -2.895 0.057 3.415 1.234 -0.359 39.422 1 AA_G1C2:G16C17_AA A 1 ? A 17 ? A 2 ? A 16 ? 1 A C 2 1_555 A G 16 1_555 A U 3 1_555 A G 15 1_555 0.424 -1.824 3.012 2.949 0.423 37.235 -2.899 -0.303 3.016 0.661 -4.610 37.350 2 AA_C2U3:G15G16_AA A 2 ? A 16 ? A 3 ? A 15 ? 1 A U 3 1_555 A G 15 1_555 A G 4 1_555 A C 14 1_555 0.010 -2.331 2.860 2.709 11.631 25.033 -6.903 0.452 1.627 25.092 -5.844 27.694 3 AA_U3G4:C14G15_AA A 3 ? A 15 ? A 4 ? A 14 ? 1 B G 1 1_555 B C 17 1_555 B C 2 1_555 B G 16 1_555 0.036 -1.787 3.475 0.092 1.222 39.912 -2.765 -0.041 3.422 1.790 -0.135 39.930 4 BB_G1C2:G16C17_BB B 1 ? B 17 ? B 2 ? B 16 ? 1 B C 2 1_555 B G 16 1_555 B U 3 1_555 B G 15 1_555 0.560 -1.795 3.007 3.033 -0.838 35.932 -2.789 -0.504 3.082 -1.355 -4.905 36.065 5 BB_C2U3:G15G16_BB B 2 ? B 16 ? B 3 ? B 15 ? 1 B U 3 1_555 B G 15 1_555 B G 4 1_555 B C 14 1_555 0.085 -2.375 2.851 3.560 10.540 26.582 -6.524 0.419 1.794 21.752 -7.348 28.777 6 BB_U3G4:C14G15_BB B 3 ? B 15 ? B 4 ? B 14 ? 1 B G 4 1_555 B C 14 1_555 B A 5 1_555 B A 13 1_555 -3.831 -0.112 0.437 79.364 141.442 115.073 -0.026 1.905 -0.680 71.919 -40.355 170.466 7 BB_G4A5:A13C14_BB B 4 ? B 14 ? B 5 ? B 13 ? 1 B A 5 1_555 B A 13 1_555 A G 7 1_555 B C 12 1_555 -3.582 0.732 1.283 -135.080 -76.158 -29.884 -0.574 -1.477 -2.325 42.599 -75.557 -155.926 8 BA_A5G7:C12A13_BB B 5 ? B 13 ? A 7 ? B 12 ? 1 A G 7 1_555 B C 12 1_555 A U 8 1_555 B A 11 1_555 0.192 -2.298 3.094 -3.253 1.035 29.701 -4.655 -1.000 2.977 2.010 6.319 29.892 9 AA_G7U8:A11C12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A U 8 1_555 B A 11 1_555 A G 9 1_555 B C 10 1_555 -1.542 -1.651 2.925 0.094 11.237 37.733 -3.556 2.301 2.354 16.920 -0.142 39.313 10 AA_U8G9:C10A11_BB A 8 ? B 11 ? A 9 ? B 10 ? 1 A G 9 1_555 B C 10 1_555 A C 10 1_555 B G 9 1_555 0.351 -1.817 2.826 -2.375 -1.525 26.091 -3.643 -1.334 2.883 -3.365 5.241 26.240 11 AA_G9C10:G9C10_BB A 9 ? B 10 ? A 10 ? B 9 ? 1 A C 10 1_555 B G 9 1_555 A A 11 1_555 B U 8 1_555 1.436 -1.700 2.937 1.912 7.543 36.005 -3.572 -2.051 2.611 12.030 -3.049 36.809 12 AA_C10A11:U8G9_BB A 10 ? B 9 ? A 11 ? B 8 ? 1 A A 11 1_555 B U 8 1_555 A C 12 1_555 B G 7 1_555 -0.172 -2.194 3.221 4.555 0.220 34.736 -3.678 0.957 3.160 0.367 -7.589 35.025 13 AA_A11C12:G7U8_BB A 11 ? B 8 ? A 12 ? B 7 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 600 ? # _atom_sites.entry_id 2D19 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_