data_2D1A # _entry.id 2D1A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D1A pdb_00002d1a 10.2210/pdb2d1a/pdb RCSB RCSB024863 ? ? WWPDB D_1000024863 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2D17 'Solution structure of stem-bulge-stem region of DIS' unspecified PDB 2D18 'Solution structure of loop region of the extended-duplex dimer' unspecified PDB 2D19 'Solution structure of loop region of the kissing-loop dimer' unspecified PDB 2D1B 'Solution structure models of the kissing-loop dimer' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D1A _pdbx_database_status.recvd_initial_deposition_date 2005-08-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Baba, S.' 1 'Takahashi, K.' 2 'Noguchi, S.' 3 'Takaku, H.' 4 'Koyanagi, Y.' 5 'Yamamoto, N.' 6 'Kawai, G.' 7 # _citation.id primary _citation.title 'Solution RNA structures of the HIV-1 dimerization initiation site in the kissing-loop and extended-duplex dimers.' _citation.journal_abbrev 'J.Biochem.(Tokyo)' _citation.journal_volume 138 _citation.page_first 583 _citation.page_last 592 _citation.year 2005 _citation.journal_id_ASTM JOBIAO _citation.country JA _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD 0418 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16272570 _citation.pdbx_database_id_DOI 10.1093/jb/mvi158 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Baba, S.' 1 ? primary 'Takahashi, K.' 2 ? primary 'Noguchi, S.' 3 ? primary 'Takaku, H.' 4 ? primary 'Koyanagi, Y.' 5 ? primary 'Yamamoto, N.' 6 ? primary 'Kawai, G.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description RNA _entity.formula_weight 12654.604 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGACCC _entity_poly.pdbx_seq_one_letter_code_can GGGUCGGCUUGCUGAAGUGCACACGGCAAGAGGCGACCC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 C n 1 6 G n 1 7 G n 1 8 C n 1 9 U n 1 10 U n 1 11 G n 1 12 C n 1 13 U n 1 14 G n 1 15 A n 1 16 A n 1 17 G n 1 18 U n 1 19 G n 1 20 C n 1 21 A n 1 22 C n 1 23 A n 1 24 C n 1 25 G n 1 26 G n 1 27 C n 1 28 A n 1 29 A n 1 30 G n 1 31 A n 1 32 G n 1 33 G n 1 34 C n 1 35 G n 1 36 A n 1 37 C n 1 38 C n 1 39 C n # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2D1A _struct_ref.pdbx_db_accession 2D1A _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2D1A A 1 ? 39 ? 2D1A 1 ? 39 ? 1 39 2 1 2D1A B 1 ? 39 ? 2D1A 1 ? 39 ? 1 39 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 2 2 1 '1D-HSQC-selected spectrum' 4 3 1 '1D-HSQC-filtered spectrum' 4 4 1 '2D NOESY' 7 5 2 '2D TOCSY' 1 6 2 '2D NOESY' 1 7 2 '2D-w2-filtered NOESY' 3 8 2 '2D-w2-filtered NOESY' 5 9 2 '2D TOCSY' 6 10 2 '2D NOESY' 6 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 283 ambient 7.0 '50mM NaCl' . K 2 298 ambient 7.0 '50mM NaCl' . K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 2 '1.8mM 25-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 3 '0.4mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 4 '0.4mM [G-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' 5 '0.2mM [A-13C/15N] labeled 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 6 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 100% D2O' '100% D2O' 7 '1.0mM 39-mer RNA FRAGMENT; 10mM phosphate buffer, 50mM NaCl; 90% H2O, 10% D2O' '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DRX Bruker 500 ? 2 DRX Bruker 600 ? # _pdbx_nmr_refine.entry_id 2D1A _pdbx_nmr_refine.method 'minimization of model RNA' _pdbx_nmr_refine.details ;Solution structures of DIS39 were constructed by combining the structure parts. Structures of the loop region of the extended-duplex dimer (2D18) and stem-bulge-stem region (2D17) were combined by superimposing the two base pairs, C12:G26 and U13:G25. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2D1A _pdbx_nmr_details.text 'model structure was constructed by combining the structure parts' # _pdbx_nmr_ensemble.entry_id 2D1A _pdbx_nmr_ensemble.conformers_calculated_total_number 1 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D1A _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'model structure' # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name Discover _pdbx_nmr_software.version 97.0 _pdbx_nmr_software.authors Accelrys _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 2D1A _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D1A _struct.title 'Solution RNA structure model of the HIV-1 dimerization initiation site in the extended-duplex dimer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D1A _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'DIS, HIV-1, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 39 N3 ? ? A G 1 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 39 O2 ? ? A G 1 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 39 N4 ? ? A G 1 B C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 38 N3 ? ? A G 2 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 38 O2 ? ? A G 2 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 38 N4 ? ? A G 2 B C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 O6 ? ? ? 1_555 B A 36 N6 ? ? A G 3 B A 36 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog8 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 37 N3 ? ? A G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 37 O2 ? ? A G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 37 N4 ? ? A G 3 B C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 B G 33 N1 ? ? A U 4 B G 33 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog12 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 36 N1 ? ? A U 4 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 36 N6 ? ? A U 4 B A 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 35 N1 ? ? A C 5 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 35 O6 ? ? A C 5 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 35 N2 ? ? A C 5 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 34 N3 ? ? A G 6 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 34 O2 ? ? A G 6 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 34 N4 ? ? A G 6 B C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 7 N1 ? ? ? 1_555 B A 31 N1 ? ? A G 7 B A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog21 hydrog ? ? A G 7 O6 ? ? ? 1_555 B A 31 N6 ? ? A G 7 B A 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog22 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 30 N1 ? ? A C 8 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 30 O6 ? ? A C 8 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 30 N2 ? ? A C 8 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 9 N3 ? ? ? 1_555 B A 29 N1 ? ? A U 9 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 9 O4 ? ? ? 1_555 B A 29 N6 ? ? A U 9 B A 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 10 N3 ? ? ? 1_555 B A 28 N1 ? ? A U 10 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 10 O4 ? ? ? 1_555 B A 28 N6 ? ? A U 10 B A 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 11 N1 ? ? ? 1_555 B C 27 N3 ? ? A G 11 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 11 N2 ? ? ? 1_555 B C 27 O2 ? ? A G 11 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 O6 ? ? ? 1_555 B C 27 N4 ? ? A G 11 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 26 N1 ? ? A C 12 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 26 O6 ? ? A C 12 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 26 N2 ? ? A C 12 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A U 13 N3 ? ? ? 1_555 B G 25 O6 ? ? A U 13 B G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A U 13 O2 ? ? ? 1_555 B G 25 N1 ? ? A U 13 B G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 24 N3 ? ? A G 14 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 24 O2 ? ? A G 14 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 24 N4 ? ? A G 14 B C 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A A 15 N6 ? ? ? 1_555 B A 23 N1 ? ? A A 15 B A 23 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A A 16 N6 ? ? ? 1_555 B A 23 N1 ? ? A A 16 B A 23 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog42 hydrog ? ? A G 17 O6 ? ? ? 1_555 B A 21 N6 ? ? A G 17 B A 21 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog43 hydrog ? ? A G 17 N1 ? ? ? 1_555 B C 22 N3 ? ? A G 17 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 17 N2 ? ? ? 1_555 B C 22 O2 ? ? A G 17 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 17 O6 ? ? ? 1_555 B C 22 N4 ? ? A G 17 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 18 N3 ? ? ? 1_555 B A 21 N1 ? ? A U 18 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 18 O4 ? ? ? 1_555 B A 21 N6 ? ? A U 18 B A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 20 N3 ? ? A G 19 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 20 O2 ? ? A G 19 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 20 N4 ? ? A G 19 B C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 20 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 20 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 20 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 20 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 20 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 20 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A A 21 N6 ? ? ? 1_555 B G 17 O6 ? ? A A 21 B G 17 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog55 hydrog ? ? A A 21 N1 ? ? ? 1_555 B U 18 N3 ? ? A A 21 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A A 21 N6 ? ? ? 1_555 B U 18 O4 ? ? A A 21 B U 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 22 N3 ? ? ? 1_555 B G 17 N1 ? ? A C 22 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 22 N4 ? ? ? 1_555 B G 17 O6 ? ? A C 22 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A C 22 O2 ? ? ? 1_555 B G 17 N2 ? ? A C 22 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A A 23 N6 ? ? ? 1_555 B A 15 N1 ? ? A A 23 B A 15 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog61 hydrog ? ? A C 24 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 24 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 24 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 24 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 24 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 24 B G 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 25 N1 ? ? ? 1_555 B U 13 O2 ? ? A G 25 B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog65 hydrog ? ? A G 25 O6 ? ? ? 1_555 B U 13 N3 ? ? A G 25 B U 13 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog66 hydrog ? ? A G 26 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 26 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 26 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 26 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 26 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 26 B C 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A C 27 N3 ? ? ? 1_555 B G 11 N1 ? ? A C 27 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A C 27 N4 ? ? ? 1_555 B G 11 O6 ? ? A C 27 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A C 27 O2 ? ? ? 1_555 B G 11 N2 ? ? A C 27 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 28 N1 ? ? ? 1_555 B U 10 N3 ? ? A A 28 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A A 28 N6 ? ? ? 1_555 B U 10 O4 ? ? A A 28 B U 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 9 N3 ? ? A A 29 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 9 O4 ? ? A A 29 B U 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 30 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 30 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 30 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 30 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 30 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 30 B C 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 31 N1 ? ? ? 1_555 B G 7 N1 ? ? A A 31 B G 7 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog80 hydrog ? ? A A 31 N6 ? ? ? 1_555 B G 7 O6 ? ? A A 31 B G 7 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog81 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 32 A C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog82 hydrog ? ? A G 33 N2 ? ? ? 1_555 A G 35 O6 ? ? A G 33 A G 35 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog83 hydrog ? ? A G 33 N1 ? ? ? 1_555 B U 4 O4 ? ? A G 33 B U 4 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog84 hydrog ? ? A C 34 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 34 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A C 34 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 34 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 34 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 34 B G 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 35 N1 ? ? ? 1_555 B C 5 N3 ? ? A G 35 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 35 N2 ? ? ? 1_555 B C 5 O2 ? ? A G 35 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 35 O6 ? ? ? 1_555 B C 5 N4 ? ? A G 35 B C 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A A 36 N6 ? ? ? 1_555 B G 3 O6 ? ? A A 36 B G 3 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog91 hydrog ? ? A A 36 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 36 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A A 36 N6 ? ? ? 1_555 B U 4 O4 ? ? A A 36 B U 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 37 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 37 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 37 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 37 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A C 37 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 37 B G 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A C 38 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 38 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A C 38 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 38 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A C 38 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 38 B G 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? A C 39 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 39 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? A C 39 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 39 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? A C 39 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 39 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 34 N3 ? ? B G 32 B C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog103 hydrog ? ? B G 33 N2 ? ? ? 1_555 B G 35 O6 ? ? B G 33 B G 35 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 2D1A _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D1A _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 C 8 8 8 C C A . n A 1 9 U 9 9 9 U U A . n A 1 10 U 10 10 10 U U A . n A 1 11 G 11 11 11 G G A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 A 21 21 21 A A A . n A 1 22 C 22 22 22 C C A . n A 1 23 A 23 23 23 A A A . n A 1 24 C 24 24 24 C C A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 G 32 32 32 G G A . n A 1 33 G 33 33 33 G G A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 A 36 36 36 A A A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 C 39 39 39 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 U 4 4 4 U U B . n B 1 5 C 5 5 5 C C B . n B 1 6 G 6 6 6 G G B . n B 1 7 G 7 7 7 G G B . n B 1 8 C 8 8 8 C C B . n B 1 9 U 9 9 9 U U B . n B 1 10 U 10 10 10 U U B . n B 1 11 G 11 11 11 G G B . n B 1 12 C 12 12 12 C C B . n B 1 13 U 13 13 13 U U B . n B 1 14 G 14 14 14 G G B . n B 1 15 A 15 15 15 A A B . n B 1 16 A 16 16 16 A A B . n B 1 17 G 17 17 17 G G B . n B 1 18 U 18 18 18 U U B . n B 1 19 G 19 19 19 G G B . n B 1 20 C 20 20 20 C C B . n B 1 21 A 21 21 21 A A B . n B 1 22 C 22 22 22 C C B . n B 1 23 A 23 23 23 A A B . n B 1 24 C 24 24 24 C C B . n B 1 25 G 25 25 25 G G B . n B 1 26 G 26 26 26 G G B . n B 1 27 C 27 27 27 C C B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 G 30 30 30 G G B . n B 1 31 A 31 31 31 A A B . n B 1 32 G 32 32 32 G G B . n B 1 33 G 33 33 33 G G B . n B 1 34 C 34 34 34 C C B . n B 1 35 G 35 35 35 G G B . n B 1 36 A 36 36 36 A A B . n B 1 37 C 37 37 37 C C B . n B 1 38 C 38 38 38 C C B . n B 1 39 C 39 39 39 C C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-11-01 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A U 4 ? ? "C1'" A U 4 ? ? N1 A U 4 ? ? 113.59 108.50 5.09 0.70 N 2 1 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 112.75 108.50 4.25 0.70 N 3 1 "O4'" A U 9 ? ? "C1'" A U 9 ? ? N1 A U 9 ? ? 112.94 108.50 4.44 0.70 N 4 1 "O4'" A U 10 ? ? "C1'" A U 10 ? ? N1 A U 10 ? ? 113.14 108.50 4.64 0.70 N 5 1 "O4'" A C 12 ? ? "C1'" A C 12 ? ? N1 A C 12 ? ? 113.56 108.50 5.06 0.70 N 6 1 "O4'" A U 13 ? ? "C1'" A U 13 ? ? N1 A U 13 ? ? 112.93 108.50 4.43 0.70 N 7 1 "O4'" A U 18 ? ? "C1'" A U 18 ? ? N1 A U 18 ? ? 113.32 108.50 4.82 0.70 N 8 1 "O4'" A C 20 ? ? "C1'" A C 20 ? ? N1 A C 20 ? ? 113.37 108.50 4.87 0.70 N 9 1 "O4'" A C 24 ? ? "C1'" A C 24 ? ? N1 A C 24 ? ? 112.71 108.50 4.21 0.70 N 10 1 "O4'" A G 30 ? ? "C1'" A G 30 ? ? N9 A G 30 ? ? 113.10 108.50 4.60 0.70 N 11 1 "O4'" A C 37 ? ? "C1'" A C 37 ? ? N1 A C 37 ? ? 112.96 108.50 4.46 0.70 N 12 1 "O4'" A C 38 ? ? "C1'" A C 38 ? ? N1 A C 38 ? ? 113.14 108.50 4.64 0.70 N 13 1 "O4'" B U 4 ? ? "C1'" B U 4 ? ? N1 B U 4 ? ? 113.59 108.50 5.09 0.70 N 14 1 "O4'" B C 8 ? ? "C1'" B C 8 ? ? N1 B C 8 ? ? 112.75 108.50 4.25 0.70 N 15 1 "O4'" B U 9 ? ? "C1'" B U 9 ? ? N1 B U 9 ? ? 113.07 108.50 4.57 0.70 N 16 1 "O4'" B U 10 ? ? "C1'" B U 10 ? ? N1 B U 10 ? ? 113.36 108.50 4.86 0.70 N 17 1 "O4'" B C 12 ? ? "C1'" B C 12 ? ? N1 B C 12 ? ? 113.71 108.50 5.21 0.70 N 18 1 "O4'" B U 18 ? ? "C1'" B U 18 ? ? N1 B U 18 ? ? 113.06 108.50 4.56 0.70 N 19 1 "O4'" B C 20 ? ? "C1'" B C 20 ? ? N1 B C 20 ? ? 113.73 108.50 5.23 0.70 N 20 1 "O4'" B C 22 ? ? "C1'" B C 22 ? ? N1 B C 22 ? ? 113.61 108.50 5.11 0.70 N 21 1 "O4'" B G 30 ? ? "C1'" B G 30 ? ? N9 B G 30 ? ? 113.09 108.50 4.59 0.70 N 22 1 "O4'" B C 37 ? ? "C1'" B C 37 ? ? N1 B C 37 ? ? 112.78 108.50 4.28 0.70 N 23 1 "O4'" B C 38 ? ? "C1'" B C 38 ? ? N1 B C 38 ? ? 113.22 108.50 4.72 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 A A 15 ? ? 0.064 'SIDE CHAIN' 2 1 G A 19 ? ? 0.063 'SIDE CHAIN' 3 1 G A 25 ? ? 0.067 'SIDE CHAIN' 4 1 G A 35 ? ? 0.068 'SIDE CHAIN' 5 1 G B 14 ? ? 0.066 'SIDE CHAIN' 6 1 A B 21 ? ? 0.059 'SIDE CHAIN' 7 1 G B 35 ? ? 0.069 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2D1A 'double helix' 2D1A 'a-form double helix' 2D1A 'bulge loop' 2D1A 'mismatched base pair' 2D1A 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 39 1_555 -0.716 -0.241 0.500 3.327 -19.245 -4.283 1 A_G1:C39_B A 1 ? B 39 ? 19 1 1 A G 2 1_555 B C 38 1_555 0.341 -0.035 0.284 -5.557 -24.382 -2.958 2 A_G2:C38_B A 2 ? B 38 ? 19 1 1 A G 3 1_555 B C 37 1_555 0.212 0.009 0.195 -14.191 -30.154 -1.493 3 A_G3:C37_B A 3 ? B 37 ? 19 1 1 A U 4 1_555 B A 36 1_555 0.486 -0.117 0.670 -11.992 -23.597 -1.378 4 A_U4:A36_B A 4 ? B 36 ? 20 1 1 A C 5 1_555 B G 35 1_555 0.903 -0.310 0.441 -3.069 -18.601 -3.926 5 A_C5:G35_B A 5 ? B 35 ? 19 1 1 A G 6 1_555 B C 34 1_555 0.288 -0.011 -0.159 -20.658 -38.523 -2.151 6 A_G6:C34_B A 6 ? B 34 ? 19 1 1 A G 7 1_555 B A 31 1_555 0.372 1.643 0.048 17.275 -26.531 -22.665 7 A_G7:A31_B A 7 ? B 31 ? 8 ? 1 A C 8 1_555 B G 30 1_555 -0.253 -0.071 0.446 19.808 -31.005 -6.158 8 A_C8:G30_B A 8 ? B 30 ? 19 1 1 A U 9 1_555 B A 29 1_555 0.419 -0.138 0.619 -5.048 -25.318 -2.443 9 A_U9:A29_B A 9 ? B 29 ? 20 1 1 A U 10 1_555 B A 28 1_555 0.437 -0.104 0.463 -3.987 -15.458 -3.543 10 A_U10:A28_B A 10 ? B 28 ? 20 1 1 A G 11 1_555 B C 27 1_555 0.222 0.007 0.364 2.229 -20.032 -2.264 11 A_G11:C27_B A 11 ? B 27 ? 19 1 1 A C 12 1_555 B G 26 1_555 -0.209 -0.004 0.210 8.713 -26.088 -1.987 12 A_C12:G26_B A 12 ? B 26 ? 19 1 1 A U 13 1_555 B G 25 1_555 1.499 -0.307 0.513 -2.068 -21.914 1.441 13 A_U13:G25_B A 13 ? B 25 ? 28 1 1 A G 14 1_555 B C 24 1_555 -0.019 -0.008 0.184 -7.253 -18.506 -4.400 14 A_G14:C24_B A 14 ? B 24 ? 19 1 1 A A 15 1_555 B A 23 1_555 -1.689 1.627 0.018 5.958 -13.478 -7.994 15 A_A15:A23_B A 15 ? B 23 ? ? 1 1 A G 17 1_555 B C 22 1_555 0.126 -0.102 0.868 11.458 -31.379 -5.064 16 A_G17:C22_B A 17 ? B 22 ? 19 1 1 A U 18 1_555 B A 21 1_555 0.351 -0.111 0.586 2.962 -30.032 -2.115 17 A_U18:A21_B A 18 ? B 21 ? 20 1 1 A G 19 1_555 B C 20 1_555 0.432 -0.027 0.392 -13.089 -28.183 -3.107 18 A_G19:C20_B A 19 ? B 20 ? 19 1 1 A C 20 1_555 B G 19 1_555 0.609 -0.280 0.767 -11.863 -23.773 -5.943 19 A_C20:G19_B A 20 ? B 19 ? 19 1 1 A A 21 1_555 B U 18 1_555 0.187 -0.196 1.051 -5.016 -23.055 -7.697 20 A_A21:U18_B A 21 ? B 18 ? 20 1 1 A C 22 1_555 B G 17 1_555 -0.883 -0.382 1.383 -0.952 -27.966 -13.375 21 A_C22:G17_B A 22 ? B 17 ? 19 1 1 A A 23 1_555 B A 15 1_555 -1.469 1.494 0.586 4.348 -17.746 -13.332 22 A_A23:A15_B A 23 ? B 15 ? ? 1 1 A C 24 1_555 B G 14 1_555 0.823 -0.282 0.389 6.650 -23.264 -5.039 23 A_C24:G14_B A 24 ? B 14 ? 19 1 1 A G 25 1_555 B U 13 1_555 -1.460 -0.263 0.624 5.107 -18.308 1.455 24 A_G25:U13_B A 25 ? B 13 ? 28 1 1 A G 26 1_555 B C 12 1_555 0.229 -0.007 0.248 -3.541 -25.585 -1.664 25 A_G26:C12_B A 26 ? B 12 ? 19 1 1 A C 27 1_555 B G 11 1_555 -0.393 0.027 0.268 1.555 -20.184 -1.611 26 A_C27:G11_B A 27 ? B 11 ? 19 1 1 A A 28 1_555 B U 10 1_555 -0.423 -0.095 0.402 2.622 -15.468 -2.929 27 A_A28:U10_B A 28 ? B 10 ? 20 1 1 A A 29 1_555 B U 9 1_555 -0.487 -0.159 0.690 4.599 -24.872 -1.451 28 A_A29:U9_B A 29 ? B 9 ? 20 1 1 A G 30 1_555 B C 8 1_555 0.245 -0.074 0.435 -19.732 -31.625 -6.018 29 A_G30:C8_B A 30 ? B 8 ? 19 1 1 A A 31 1_555 B G 7 1_555 -0.412 1.648 0.023 -16.770 -26.270 -22.438 30 A_A31:G7_B A 31 ? B 7 ? 8 ? 1 A C 34 1_555 B G 6 1_555 -0.277 -0.008 -0.155 20.979 -38.680 -2.342 31 A_C34:G6_B A 34 ? B 6 ? 19 1 1 A G 35 1_555 B C 5 1_555 -0.887 -0.309 0.433 2.553 -19.418 -4.088 32 A_G35:C5_B A 35 ? B 5 ? 19 1 1 A A 36 1_555 B U 4 1_555 -0.487 -0.123 0.645 9.858 -24.226 -1.992 33 A_A36:U4_B A 36 ? B 4 ? 20 1 1 A C 37 1_555 B G 3 1_555 -0.114 -0.004 0.297 12.122 -29.389 -1.828 34 A_C37:G3_B A 37 ? B 3 ? 19 1 1 A C 38 1_555 B G 2 1_555 -0.409 -0.039 0.290 6.639 -25.295 -3.255 35 A_C38:G2_B A 38 ? B 2 ? 19 1 1 A C 39 1_555 B G 1 1_555 0.659 -0.228 0.517 -2.859 -20.596 -4.529 36 A_C39:G1_B A 39 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 39 1_555 A G 2 1_555 B C 38 1_555 -0.256 -1.458 3.298 -0.170 5.725 39.701 -2.766 0.355 3.068 8.377 0.249 40.095 1 AA_G1G2:C38C39_BB A 1 ? B 39 ? A 2 ? B 38 ? 1 A G 2 1_555 B C 38 1_555 A G 3 1_555 B C 37 1_555 0.023 -1.566 3.258 1.004 8.928 33.052 -3.978 0.108 2.753 15.344 -1.725 34.219 2 AA_G2G3:C37C38_BB A 2 ? B 38 ? A 3 ? B 37 ? 1 A G 3 1_555 B C 37 1_555 A U 4 1_555 B A 36 1_555 0.084 -1.513 3.014 -1.413 2.530 33.860 -2.955 -0.348 2.891 4.334 2.420 33.980 3 AA_G3U4:A36C37_BB A 3 ? B 37 ? A 4 ? B 36 ? 1 A U 4 1_555 B A 36 1_555 A C 5 1_555 B G 35 1_555 0.002 -1.397 2.810 3.806 3.289 35.016 -2.708 0.469 2.658 5.432 -6.285 35.364 4 AA_U4C5:G35A36_BB A 4 ? B 36 ? A 5 ? B 35 ? 1 A C 5 1_555 B G 35 1_555 A G 6 1_555 B C 34 1_555 0.235 -1.506 3.342 9.183 21.138 30.822 -4.693 0.683 1.950 34.390 -14.939 38.318 5 AA_C5G6:C34G35_BB A 5 ? B 35 ? A 6 ? B 34 ? 1 A G 6 1_555 B C 34 1_555 A G 7 1_555 B A 31 1_555 1.076 -2.223 3.402 -28.306 -2.318 52.519 -2.132 -2.522 2.650 -2.430 29.668 59.222 6 AA_G6G7:A31C34_BB A 6 ? B 34 ? A 7 ? B 31 ? 1 A G 7 1_555 B A 31 1_555 A C 8 1_555 B G 30 1_555 1.635 -1.037 2.770 -1.553 1.289 36.853 -1.784 -2.757 2.665 2.038 2.454 36.906 7 AA_G7C8:G30A31_BB A 7 ? B 31 ? A 8 ? B 30 ? 1 A C 8 1_555 B G 30 1_555 A U 9 1_555 B A 29 1_555 0.336 -1.660 3.619 -0.444 5.608 42.380 -2.882 -0.509 3.379 7.717 0.611 42.735 8 AA_C8U9:A29G30_BB A 8 ? B 30 ? A 9 ? B 29 ? 1 A U 9 1_555 B A 29 1_555 A U 10 1_555 B A 28 1_555 0.151 -1.773 2.979 2.895 1.415 33.424 -3.279 0.166 2.906 2.452 -5.019 33.575 9 AA_U9U10:A28A29_BB A 9 ? B 29 ? A 10 ? B 28 ? 1 A U 10 1_555 B A 28 1_555 A G 11 1_555 B C 27 1_555 -0.036 -1.750 2.781 0.425 11.188 28.719 -4.945 0.130 1.976 21.550 -0.818 30.781 10 AA_U10G11:C27A28_BB A 10 ? B 28 ? A 11 ? B 27 ? 1 A G 11 1_555 B C 27 1_555 A C 12 1_555 B G 26 1_555 -0.002 -1.919 2.940 -0.013 0.092 29.485 -3.788 0.001 2.934 0.182 0.026 29.486 11 AA_G11C12:G26C27_BB A 11 ? B 27 ? A 12 ? B 26 ? 1 A C 12 1_555 B G 26 1_555 A U 13 1_555 B G 25 1_555 0.490 -1.359 3.395 0.733 6.053 41.128 -2.565 -0.612 3.181 8.560 -1.037 41.558 12 AA_C12U13:G25G26_BB A 12 ? B 26 ? A 13 ? B 25 ? 1 A U 13 1_555 B G 25 1_555 A G 14 1_555 B C 24 1_555 -0.249 -1.787 2.820 6.090 15.434 31.438 -4.605 1.068 1.710 26.314 -10.384 35.450 13 AA_U13G14:C24G25_BB A 13 ? B 25 ? A 14 ? B 24 ? 1 A G 14 1_555 B C 24 1_555 A A 15 1_555 B A 23 1_555 -0.465 -2.344 2.729 -0.712 3.615 19.706 -8.032 1.079 2.281 10.444 2.058 20.044 14 AA_G14A15:A23C24_BB A 14 ? B 24 ? A 15 ? B 23 ? 1 A A 15 1_555 B A 23 1_555 A G 17 1_555 B C 22 1_555 -1.097 -2.142 4.523 14.967 5.549 47.402 -3.069 2.726 3.778 6.684 -18.030 49.870 15 AA_A15G17:C22A23_BB A 15 ? B 23 ? A 17 ? B 22 ? 1 A G 17 1_555 B C 22 1_555 A U 18 1_555 B A 21 1_555 0.358 -1.821 3.208 2.062 -0.562 36.672 -2.814 -0.290 3.249 -0.892 -3.273 36.732 16 AA_G17U18:A21C22_BB A 17 ? B 22 ? A 18 ? B 21 ? 1 A U 18 1_555 B A 21 1_555 A G 19 1_555 B C 20 1_555 -0.104 -1.647 3.297 2.326 12.288 35.031 -4.108 0.451 2.583 19.657 -3.721 37.130 17 AA_U18G19:C20A21_BB A 18 ? B 21 ? A 19 ? B 20 ? 1 A G 19 1_555 B C 20 1_555 A C 20 1_555 B G 19 1_555 -0.399 -1.571 3.054 -1.961 -1.111 34.478 -2.482 0.386 3.119 -1.873 3.305 34.549 18 AA_G19C20:G19C20_BB A 19 ? B 20 ? A 20 ? B 19 ? 1 A C 20 1_555 B G 19 1_555 A A 21 1_555 B U 18 1_555 -0.060 -1.327 2.667 -0.150 6.932 33.276 -3.131 0.084 2.351 11.945 0.258 33.970 19 AA_C20A21:U18G19_BB A 20 ? B 19 ? A 21 ? B 18 ? 1 A A 21 1_555 B U 18 1_555 A C 22 1_555 B G 17 1_555 0.029 -2.150 2.972 -0.135 -4.787 26.894 -3.404 -0.093 3.298 -10.189 0.287 27.310 20 AA_A21C22:G17U18_BB A 21 ? B 18 ? A 22 ? B 17 ? 1 A C 22 1_555 B G 17 1_555 A A 23 1_555 B A 15 1_555 1.535 -2.912 4.605 -21.428 -2.699 43.099 -3.296 -4.160 3.664 -3.430 27.227 47.976 21 AA_C22A23:A15G17_BB A 22 ? B 17 ? A 23 ? B 15 ? 1 A A 23 1_555 B A 15 1_555 A C 24 1_555 B G 14 1_555 0.666 -1.696 3.059 1.508 -1.559 44.575 -2.098 -0.747 3.133 -2.054 -1.987 44.625 22 AA_A23C24:G14A15_BB A 23 ? B 15 ? A 24 ? B 14 ? 1 A C 24 1_555 B G 14 1_555 A G 25 1_555 B U 13 1_555 0.376 -2.016 2.714 -4.203 14.269 25.295 -6.043 -1.349 1.332 29.549 8.705 29.283 23 AA_C24G25:U13G14_BB A 24 ? B 14 ? A 25 ? B 13 ? 1 A G 25 1_555 B U 13 1_555 A G 26 1_555 B C 12 1_555 -0.370 -1.354 3.381 -0.107 5.287 40.607 -2.520 0.518 3.189 7.579 0.154 40.936 24 AA_G25G26:C12U13_BB A 25 ? B 13 ? A 26 ? B 12 ? 1 A G 26 1_555 B C 12 1_555 A C 27 1_555 B G 11 1_555 0.027 -2.033 2.970 -0.010 -0.256 28.617 -4.060 -0.057 2.988 -0.518 0.020 28.618 25 AA_G26C27:G11C12_BB A 26 ? B 12 ? A 27 ? B 11 ? 1 A C 27 1_555 B G 11 1_555 A A 28 1_555 B U 10 1_555 0.009 -1.832 2.944 -0.872 10.773 29.508 -5.017 -0.148 2.156 20.311 1.644 31.384 26 AA_C27A28:U10G11_BB A 27 ? B 11 ? A 28 ? B 10 ? 1 A A 28 1_555 B U 10 1_555 A A 29 1_555 B U 9 1_555 -0.202 -1.827 2.955 -4.003 0.436 33.018 -3.258 -0.251 2.935 0.763 7.011 33.255 27 AA_A28A29:U9U10_BB A 28 ? B 10 ? A 29 ? B 9 ? 1 A A 29 1_555 B U 9 1_555 A G 30 1_555 B C 8 1_555 -0.448 -1.615 3.616 0.575 5.391 42.640 -2.780 0.673 3.391 7.378 -0.788 42.967 28 AA_A29G30:C8U9_BB A 29 ? B 9 ? A 30 ? B 8 ? 1 A G 30 1_555 B C 8 1_555 A A 31 1_555 B G 7 1_555 -1.596 -1.028 2.756 1.685 1.864 36.439 -1.852 2.739 2.628 2.977 -2.691 36.523 29 AA_G30A31:G7C8_BB A 30 ? B 8 ? A 31 ? B 7 ? 1 A A 31 1_555 B G 7 1_555 A C 34 1_555 B G 6 1_555 -1.030 -2.192 3.422 28.076 -2.298 52.210 -2.112 2.502 2.688 -2.423 -29.594 58.852 30 AA_A31C34:G6G7_BB A 31 ? B 7 ? A 34 ? B 6 ? 1 A C 34 1_555 B G 6 1_555 A G 35 1_555 B C 5 1_555 -0.243 -1.529 3.363 -9.170 21.540 30.943 -4.724 -0.660 1.937 34.813 14.821 38.628 31 AA_C34G35:C5G6_BB A 34 ? B 6 ? A 35 ? B 5 ? 1 A G 35 1_555 B C 5 1_555 A A 36 1_555 B U 4 1_555 -0.038 -1.411 2.845 -3.710 3.833 35.116 -2.790 -0.397 2.671 6.307 6.106 35.506 32 AA_G35A36:U4C5_BB A 35 ? B 5 ? A 36 ? B 4 ? 1 A A 36 1_555 B U 4 1_555 A C 37 1_555 B G 3 1_555 -0.018 -1.527 3.021 1.043 2.619 33.909 -2.988 0.182 2.896 4.482 -1.784 34.023 33 AA_A36C37:G3U4_BB A 36 ? B 4 ? A 37 ? B 3 ? 1 A C 37 1_555 B G 3 1_555 A C 38 1_555 B G 2 1_555 -0.076 -1.564 3.160 -0.288 8.414 32.192 -4.010 0.089 2.678 14.859 0.508 33.247 34 AA_C37C38:G2G3_BB A 37 ? B 3 ? A 38 ? B 2 ? 1 A C 38 1_555 B G 2 1_555 A C 39 1_555 B G 1 1_555 0.234 -1.345 3.313 -0.077 6.024 40.179 -2.596 -0.346 3.088 8.710 0.112 40.609 35 AA_C38C39:G1G2_BB A 38 ? B 2 ? A 39 ? B 1 ? #