HEADER OXIDOREDUCTASE 31-AUG-05 2D1Q TITLE CRYSTAL STRUCTURE OF THE THERMOSTABLE JAPANESE FIREFLY LUCIFERASE TITLE 2 COMPLEXED WITH MGATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LUCIFERIN 4-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: LUCIFERASE; COMPND 5 EC: 1.13.12.7; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LUCIOLA CRUCIATA; SOURCE 3 ORGANISM_COMMON: JAPANESE FIREFLY; SOURCE 4 ORGANISM_TAXID: 7051; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HB101; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PUC18 KEYWDS ALPHA/BETA, BETA BARREL, ALPHA+BETA, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NAKATSU,S.ICHIYAMA,J.HIRATAKE,A.SALDANHA,N.KOBASHI,K.SAKATA,H.KATO, AUTHOR 2 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 6 15-NOV-23 2D1Q 1 REMARK REVDAT 5 25-OCT-23 2D1Q 1 REMARK REVDAT 4 10-NOV-21 2D1Q 1 REMARK SEQADV LINK REVDAT 3 31-JAN-18 2D1Q 1 REMARK REVDAT 2 24-FEB-09 2D1Q 1 VERSN REVDAT 1 21-MAR-06 2D1Q 0 JRNL AUTH T.NAKATSU,S.ICHIYAMA,J.HIRATAKE,A.SALDANHA,N.KOBASHI, JRNL AUTH 2 K.SAKATA,H.KATO JRNL TITL STRUCTURAL BASIS FOR THE SPECTRAL DIFFERENCE IN LUCIFERASE JRNL TITL 2 BIOLUMINESCENCE. JRNL REF NATURE V. 440 372 2006 JRNL REFN ISSN 0028-0836 JRNL PMID 16541080 JRNL DOI 10.1038/NATURE04542 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 24062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1588 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 92 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 183 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.64000 REMARK 3 B22 (A**2) : -0.18000 REMARK 3 B33 (A**2) : 1.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.319 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.224 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.834 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4081 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5556 ; 1.264 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 529 ; 5.703 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 657 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3026 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1616 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.134 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.141 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2632 ; 0.614 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4250 ; 1.151 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1449 ; 1.714 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1306 ; 2.932 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D1Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000024879. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.55 REMARK 200 R MERGE FOR SHELL (I) : 0.15000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1LCI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, LITHIUM CHROLIDE, ATP, REMARK 280 MAGNESIUM CHLORIDE, TRIS-HCL, PH 8.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.78300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 90.98750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 26.78300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 90.98750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASN A 3 REMARK 465 MET A 4 REMARK 465 GLU A 5 REMARK 465 ASN A 6 REMARK 465 ASP A 7 REMARK 465 GLY A 202 REMARK 465 SER A 203 REMARK 465 THR A 204 REMARK 465 GLY A 205 REMARK 465 LYS A 543 REMARK 465 PRO A 544 REMARK 465 VAL A 545 REMARK 465 ALA A 546 REMARK 465 LYS A 547 REMARK 465 MET A 548 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CD OE1 OE2 REMARK 470 LYS A 15 CG CD CE NZ REMARK 470 LYS A 38 CE NZ REMARK 470 ARG A 114 CZ NH1 NH2 REMARK 470 LYS A 133 CE NZ REMARK 470 LYS A 143 CE NZ REMARK 470 LYS A 149 CD CE NZ REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 ARG A 172 CD NE CZ NH1 NH2 REMARK 470 GLN A 179 CG CD OE1 NE2 REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 LYS A 191 CG CD CE NZ REMARK 470 GLN A 232 CG CD OE1 NE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS A 283 CE NZ REMARK 470 LYS A 299 CD CE NZ REMARK 470 LYS A 305 CE NZ REMARK 470 ASP A 359 OD1 OD2 REMARK 470 LYS A 382 CG CD CE NZ REMARK 470 ARG A 388 CD NE CZ NH1 NH2 REMARK 470 ASN A 405 CG OD1 ND2 REMARK 470 GLU A 408 CG CD OE1 OE2 REMARK 470 LYS A 411 CE NZ REMARK 470 GLU A 412 CD OE1 OE2 REMARK 470 GLU A 430 CG CD OE1 OE2 REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 GLU A 490 CG CD OE1 OE2 REMARK 470 SER A 491 OG REMARK 470 LYS A 493 CD CE NZ REMARK 470 ASN A 494 CG OD1 ND2 REMARK 470 LYS A 498 CG CD CE NZ REMARK 470 LYS A 512 CE NZ REMARK 470 ARG A 519 CZ NH1 NH2 REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 ARG A 535 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 539 CG CD OE1 OE2 REMARK 470 LYS A 542 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 9 30.31 -98.14 REMARK 500 ASP A 77 13.29 80.72 REMARK 500 SER A 234 73.02 -169.30 REMARK 500 THR A 348 -63.07 69.40 REMARK 500 SER A 349 -158.07 -150.80 REMARK 500 ASP A 358 39.53 -150.51 REMARK 500 LYS A 381 13.76 59.43 REMARK 500 LYS A 447 -123.75 49.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2D1S RELATED DB: PDB REMARK 900 RELATED ID: 2D1R RELATED DB: PDB REMARK 900 RELATED ID: 2D1T RELATED DB: PDB REMARK 900 RELATED ID: MY_001000084.1 RELATED DB: TARGETDB DBREF 2D1Q A 1 548 UNP P13129 LUCI_LUCCR 1 548 SEQADV 2D1Q CSO A 63 UNP P13129 CYS 63 MODIFIED RESIDUE SEQADV 2D1Q CSO A 64 UNP P13129 CYS 64 MODIFIED RESIDUE SEQADV 2D1Q ILE A 217 UNP P13129 THR 217 ENGINEERED MUTATION SEQRES 1 A 548 MET GLU ASN MET GLU ASN ASP GLU ASN ILE VAL VAL GLY SEQRES 2 A 548 PRO LYS PRO PHE TYR PRO ILE GLU GLU GLY SER ALA GLY SEQRES 3 A 548 THR GLN LEU ARG LYS TYR MET GLU ARG TYR ALA LYS LEU SEQRES 4 A 548 GLY ALA ILE ALA PHE THR ASN ALA VAL THR GLY VAL ASP SEQRES 5 A 548 TYR SER TYR ALA GLU TYR LEU GLU LYS SER CSO CSO LEU SEQRES 6 A 548 GLY LYS ALA LEU GLN ASN TYR GLY LEU VAL VAL ASP GLY SEQRES 7 A 548 ARG ILE ALA LEU CYS SER GLU ASN CYS GLU GLU PHE PHE SEQRES 8 A 548 ILE PRO VAL ILE ALA GLY LEU PHE ILE GLY VAL GLY VAL SEQRES 9 A 548 ALA PRO THR ASN GLU ILE TYR THR LEU ARG GLU LEU VAL SEQRES 10 A 548 HIS SER LEU GLY ILE SER LYS PRO THR ILE VAL PHE SER SEQRES 11 A 548 SER LYS LYS GLY LEU ASP LYS VAL ILE THR VAL GLN LYS SEQRES 12 A 548 THR VAL THR THR ILE LYS THR ILE VAL ILE LEU ASP SER SEQRES 13 A 548 LYS VAL ASP TYR ARG GLY TYR GLN CYS LEU ASP THR PHE SEQRES 14 A 548 ILE LYS ARG ASN THR PRO PRO GLY PHE GLN ALA SER SER SEQRES 15 A 548 PHE LYS THR VAL GLU VAL ASP ARG LYS GLU GLN VAL ALA SEQRES 16 A 548 LEU ILE MET ASN SER SER GLY SER THR GLY LEU PRO LYS SEQRES 17 A 548 GLY VAL GLN LEU THR HIS GLU ASN ILE VAL THR ARG PHE SEQRES 18 A 548 SER HIS ALA ARG ASP PRO ILE TYR GLY ASN GLN VAL SER SEQRES 19 A 548 PRO GLY THR ALA VAL LEU THR VAL VAL PRO PHE HIS HIS SEQRES 20 A 548 GLY PHE GLY MET PHE THR THR LEU GLY TYR LEU ILE CYS SEQRES 21 A 548 GLY PHE ARG VAL VAL MET LEU THR LYS PHE ASP GLU GLU SEQRES 22 A 548 THR PHE LEU LYS THR LEU GLN ASP TYR LYS CYS THR SER SEQRES 23 A 548 VAL ILE LEU VAL PRO THR LEU PHE ALA ILE LEU ASN LYS SEQRES 24 A 548 SER GLU LEU LEU ASN LYS TYR ASP LEU SER ASN LEU VAL SEQRES 25 A 548 GLU ILE ALA SER GLY GLY ALA PRO LEU SER LYS GLU VAL SEQRES 26 A 548 GLY GLU ALA VAL ALA ARG ARG PHE ASN LEU PRO GLY VAL SEQRES 27 A 548 ARG GLN GLY TYR GLY LEU THR GLU THR THR SER ALA ILE SEQRES 28 A 548 ILE ILE THR PRO GLU GLY ASP ASP LYS PRO GLY ALA SER SEQRES 29 A 548 GLY LYS VAL VAL PRO LEU PHE LYS ALA LYS VAL ILE ASP SEQRES 30 A 548 LEU ASP THR LYS LYS SER LEU GLY PRO ASN ARG ARG GLY SEQRES 31 A 548 GLU VAL CYS VAL LYS GLY PRO MET LEU MET LYS GLY TYR SEQRES 32 A 548 VAL ASN ASN PRO GLU ALA THR LYS GLU LEU ILE ASP GLU SEQRES 33 A 548 GLU GLY TRP LEU HIS THR GLY ASP ILE GLY TYR TYR ASP SEQRES 34 A 548 GLU GLU LYS HIS PHE PHE ILE VAL ASP ARG LEU LYS SER SEQRES 35 A 548 LEU ILE LYS TYR LYS GLY TYR GLN VAL PRO PRO ALA GLU SEQRES 36 A 548 LEU GLU SER VAL LEU LEU GLN HIS PRO SER ILE PHE ASP SEQRES 37 A 548 ALA GLY VAL ALA GLY VAL PRO ASP PRO VAL ALA GLY GLU SEQRES 38 A 548 LEU PRO GLY ALA VAL VAL VAL LEU GLU SER GLY LYS ASN SEQRES 39 A 548 MET THR GLU LYS GLU VAL MET ASP TYR VAL ALA SER GLN SEQRES 40 A 548 VAL SER ASN ALA LYS ARG LEU ARG GLY GLY VAL ARG PHE SEQRES 41 A 548 VAL ASP GLU VAL PRO LYS GLY LEU THR GLY LYS ILE ASP SEQRES 42 A 548 GLY ARG ALA ILE ARG GLU ILE LEU LYS LYS PRO VAL ALA SEQRES 43 A 548 LYS MET MODRES 2D1Q CSO A 63 CYS S-HYDROXYCYSTEINE MODRES 2D1Q CSO A 64 CYS S-HYDROXYCYSTEINE HET CSO A 63 7 HET CSO A 64 7 HET AMP A1001 23 HETNAM CSO S-HYDROXYCYSTEINE HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 1 CSO 2(C3 H7 N O3 S) FORMUL 2 AMP C10 H14 N5 O7 P FORMUL 3 HOH *183(H2 O) HELIX 1 1 SER A 24 GLY A 40 1 17 HELIX 2 2 TYR A 55 GLY A 73 1 19 HELIX 3 3 PHE A 90 GLY A 101 1 12 HELIX 4 4 THR A 112 LYS A 124 1 13 HELIX 5 5 GLY A 134 VAL A 145 1 12 HELIX 6 6 CYS A 165 ASN A 173 1 9 HELIX 7 7 GLN A 179 PHE A 183 5 5 HELIX 8 8 HIS A 214 ARG A 225 1 12 HELIX 9 9 HIS A 247 GLY A 261 1 15 HELIX 10 10 ASP A 271 TYR A 282 1 12 HELIX 11 11 PRO A 291 SER A 300 1 10 HELIX 12 12 LEU A 302 TYR A 306 5 5 HELIX 13 13 SER A 322 PHE A 333 1 12 HELIX 14 14 THR A 345 THR A 348 5 4 HELIX 15 15 ASN A 406 ILE A 414 1 9 HELIX 16 16 LYS A 441 LEU A 443 5 3 HELIX 17 17 PRO A 452 GLN A 462 1 11 HELIX 18 18 THR A 496 SER A 506 1 11 HELIX 19 19 SER A 509 ARG A 513 5 5 HELIX 20 20 ASP A 533 LYS A 542 1 10 SHEET 1 A 5 VAL A 11 VAL A 12 0 SHEET 2 A 5 LYS A 372 ILE A 376 -1 O ALA A 373 N VAL A 11 SHEET 3 A 5 GLY A 390 LYS A 395 -1 O GLU A 391 N ILE A 376 SHEET 4 A 5 LEU A 420 TYR A 428 -1 O LEU A 420 N VAL A 394 SHEET 5 A 5 PHE A 434 ARG A 439 -1 O PHE A 435 N TYR A 427 SHEET 1 B 9 ASP A 52 SER A 54 0 SHEET 2 B 9 ILE A 42 ASN A 46 -1 N PHE A 44 O TYR A 53 SHEET 3 B 9 ARG A 263 MET A 266 1 O VAL A 264 N ALA A 43 SHEET 4 B 9 ALA A 238 THR A 241 1 N VAL A 239 O VAL A 265 SHEET 5 B 9 SER A 286 LEU A 289 1 O SER A 286 N LEU A 240 SHEET 6 B 9 GLU A 313 SER A 316 1 O ALA A 315 N VAL A 287 SHEET 7 B 9 ARG A 339 GLY A 343 1 O ARG A 339 N ILE A 314 SHEET 8 B 9 ALA A 350 ILE A 353 -1 O ILE A 352 N TYR A 342 SHEET 9 B 9 LYS A 366 VAL A 367 -1 O LYS A 366 N ILE A 353 SHEET 1 C 4 GLY A 103 THR A 107 0 SHEET 2 C 4 ARG A 79 CYS A 83 1 N ILE A 80 O GLY A 103 SHEET 3 C 4 ILE A 127 SER A 130 1 O PHE A 129 N ALA A 81 SHEET 4 C 4 THR A 150 ILE A 153 1 O VAL A 152 N SER A 130 SHEET 1 D 3 VAL A 194 MET A 198 0 SHEET 2 D 3 VAL A 210 THR A 213 -1 O VAL A 210 N MET A 198 SHEET 3 D 3 GLY A 402 TYR A 403 -1 O GLY A 402 N GLN A 211 SHEET 1 E 2 ILE A 444 TYR A 446 0 SHEET 2 E 2 TYR A 449 VAL A 451 -1 O TYR A 449 N TYR A 446 SHEET 1 F 3 ILE A 466 ASP A 476 0 SHEET 2 F 3 GLY A 480 LEU A 489 -1 O VAL A 488 N ASP A 468 SHEET 3 F 3 VAL A 518 PHE A 520 1 O ARG A 519 N VAL A 487 LINK C SER A 62 N CSO A 63 1555 1555 1.34 LINK C CSO A 63 N CSO A 64 1555 1555 1.33 LINK C CSO A 64 N LEU A 65 1555 1555 1.34 SITE 1 AC1 20 SER A 200 SER A 201 HIS A 247 GLY A 318 SITE 2 AC1 20 ALA A 319 PRO A 320 GLN A 340 GLY A 341 SITE 3 AC1 20 TYR A 342 GLY A 343 LEU A 344 THR A 345 SITE 4 AC1 20 SER A 364 ASP A 424 ARG A 439 LYS A 531 SITE 5 AC1 20 HOH A1015 HOH A1029 HOH A1042 HOH A1087 CRYST1 57.780 181.975 53.566 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017307 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018669 0.00000