data_2D27 # _entry.id 2D27 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2D27 RCSB RCSB024895 WWPDB D_1000024895 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2D28 _pdbx_database_related.details 'the same protein in crystal form P43212' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 2D27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2005-09-03 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chen, Y.' 1 'Shiue, S.-J.' 2 'Huang, C.-W.' 3 'Chang, J.-L.' 4 'Chien, Y.-L.' 5 'Hu, N.-T.' 6 'Chan, N.-L.' 7 # _citation.id primary _citation.title 'Structure and Function of the XpsE N-Terminal Domain, an Essential Component of the Xanthomonas campestris Type II Secretion System' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 42356 _citation.page_last 42363 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16162504 _citation.pdbx_database_id_DOI 10.1074/jbc.M506843200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chen, Y.' 1 primary 'Shiue, S.-J.' 2 primary 'Huang, C.-W.' 3 primary 'Chang, J.-L.' 4 primary 'Chien, Y.-L.' 5 primary 'Hu, N.-T.' 6 primary 'Chan, N.-L.' 7 # _cell.entry_id 2D27 _cell.length_a 92.479 _cell.length_b 92.479 _cell.length_c 123.763 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D27 _symmetry.space_group_name_H-M 'I 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'type II secretion ATPase XpsE' 16957.996 1 ? ? 'N-terminal domain' ? 2 water nat water 18.015 218 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name XpsE # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)EQRSAETRIVEALLERRRLKDTDLLRARQLQAESG(MSE)GLLALLGRLGLVSERDHAETCAEVLGLPLVDARQL GDTPPE(MSE)LPEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVRLATGLPLLLHVGLRSEIDDLIERWY G ; _entity_poly.pdbx_seq_one_letter_code_can ;MEQRSAETRIVEALLERRRLKDTDLLRARQLQAESGMGLLALLGRLGLVSERDHAETCAEVLGLPLVDARQLGDTPPEML PEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVRLATGLPLLLHVGLRSEIDDLIERWYG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLU n 1 3 GLN n 1 4 ARG n 1 5 SER n 1 6 ALA n 1 7 GLU n 1 8 THR n 1 9 ARG n 1 10 ILE n 1 11 VAL n 1 12 GLU n 1 13 ALA n 1 14 LEU n 1 15 LEU n 1 16 GLU n 1 17 ARG n 1 18 ARG n 1 19 ARG n 1 20 LEU n 1 21 LYS n 1 22 ASP n 1 23 THR n 1 24 ASP n 1 25 LEU n 1 26 LEU n 1 27 ARG n 1 28 ALA n 1 29 ARG n 1 30 GLN n 1 31 LEU n 1 32 GLN n 1 33 ALA n 1 34 GLU n 1 35 SER n 1 36 GLY n 1 37 MSE n 1 38 GLY n 1 39 LEU n 1 40 LEU n 1 41 ALA n 1 42 LEU n 1 43 LEU n 1 44 GLY n 1 45 ARG n 1 46 LEU n 1 47 GLY n 1 48 LEU n 1 49 VAL n 1 50 SER n 1 51 GLU n 1 52 ARG n 1 53 ASP n 1 54 HIS n 1 55 ALA n 1 56 GLU n 1 57 THR n 1 58 CYS n 1 59 ALA n 1 60 GLU n 1 61 VAL n 1 62 LEU n 1 63 GLY n 1 64 LEU n 1 65 PRO n 1 66 LEU n 1 67 VAL n 1 68 ASP n 1 69 ALA n 1 70 ARG n 1 71 GLN n 1 72 LEU n 1 73 GLY n 1 74 ASP n 1 75 THR n 1 76 PRO n 1 77 PRO n 1 78 GLU n 1 79 MSE n 1 80 LEU n 1 81 PRO n 1 82 GLU n 1 83 VAL n 1 84 GLN n 1 85 GLY n 1 86 LEU n 1 87 SER n 1 88 LEU n 1 89 ARG n 1 90 PHE n 1 91 LEU n 1 92 LYS n 1 93 GLN n 1 94 PHE n 1 95 HIS n 1 96 LEU n 1 97 CYS n 1 98 PRO n 1 99 VAL n 1 100 GLY n 1 101 GLU n 1 102 ARG n 1 103 ASP n 1 104 GLY n 1 105 ARG n 1 106 LEU n 1 107 ASP n 1 108 LEU n 1 109 TRP n 1 110 ILE n 1 111 ALA n 1 112 ASP n 1 113 PRO n 1 114 TYR n 1 115 ASP n 1 116 ASP n 1 117 TYR n 1 118 ALA n 1 119 ILE n 1 120 ASP n 1 121 ALA n 1 122 VAL n 1 123 ARG n 1 124 LEU n 1 125 ALA n 1 126 THR n 1 127 GLY n 1 128 LEU n 1 129 PRO n 1 130 LEU n 1 131 LEU n 1 132 LEU n 1 133 HIS n 1 134 VAL n 1 135 GLY n 1 136 LEU n 1 137 ARG n 1 138 SER n 1 139 GLU n 1 140 ILE n 1 141 ASP n 1 142 ASP n 1 143 LEU n 1 144 ILE n 1 145 GLU n 1 146 ARG n 1 147 TRP n 1 148 TYR n 1 149 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Xanthomonas _entity_src_gen.pdbx_gene_src_gene xpsE _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Xanthomonas campestris' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 339 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21C _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GSPE_XANCP _struct_ref.pdbx_db_accession P31742 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MEQRSAETRIVEALLERRRLKDTDLLRARQLQAESGMGLLALLGRLGLVSERDHAETCAEVLGLPLVDARQLGDTPPEML PEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAIDAVRLATGLPLLLHVGLRSEIDDLIERWYG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D27 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 149 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P31742 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 149 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 149 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D27 MSE A 1 ? UNP P31742 MET 1 'MODIFIED RESIDUE' 1 1 1 2D27 MSE A 37 ? UNP P31742 MET 37 'MODIFIED RESIDUE' 37 2 1 2D27 MSE A 79 ? UNP P31742 MET 79 'MODIFIED RESIDUE' 79 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D27 _exptl.crystals_number ? _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.15 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.9 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'ammonium sulfate, MgCl2, MES pH 5.6, PEG8000, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2004-07-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9537 1.0 2 0.9801 1.0 3 0.9796 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SPRING-8 BEAMLINE BL12B2' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9537, 0.9801, 0.9796' _diffrn_source.pdbx_synchrotron_site SPring-8 _diffrn_source.pdbx_synchrotron_beamline BL12B2 # _reflns.entry_id 2D27 _reflns.observed_criterion_sigma_F 2.0 _reflns.observed_criterion_sigma_I 2.0 _reflns.d_resolution_high 2.21 _reflns.d_resolution_low 28.0 _reflns.number_all ? _reflns.number_obs 13800 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.21 _reflns_shell.d_res_low 2.29 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 2.210 _refine.ls_d_res_low 28.0 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 98.400 _refine.ls_number_reflns_obs 13571 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.ls_R_factor_all 0.195 _refine.ls_R_factor_R_work 0.193 _refine.ls_R_factor_R_free 0.236 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 677 _refine.B_iso_mean 33.889 _refine.aniso_B[1][1] -0.670 _refine.aniso_B[2][2] -0.670 _refine.aniso_B[3][3] 1.340 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.950 _refine.correlation_coeff_Fo_to_Fc_free 0.925 _refine.pdbx_overall_ESU_R 0.190 _refine.pdbx_overall_ESU_R_Free 0.175 _refine.overall_SU_ML 0.114 _refine.overall_SU_B 4.490 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.entry_id 2D27 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 13800 _refine.ls_R_factor_obs 0.195 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1165 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 218 _refine_hist.number_atoms_total 1383 _refine_hist.d_res_high 2.210 _refine_hist.d_res_low 28.0 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1183 0.024 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1151 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1602 2.055 2.001 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 2647 1.035 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 147 8.785 5.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 184 0.159 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1312 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 242 0.010 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 274 0.248 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1332 0.246 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 804 0.099 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 179 0.248 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 19 0.147 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 101 0.345 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 27 0.312 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 735 1.280 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1171 2.325 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 448 3.569 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 431 5.940 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.210 _refine_ls_shell.d_res_low 2.267 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 911 _refine_ls_shell.R_factor_R_work 0.296 _refine_ls_shell.R_factor_R_free 0.395 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 77 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 988 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2D27 _struct.title 'Structure of the N-terminal domain of XpsE (crystal form I4122)' _struct.pdbx_descriptor 'type II secretion ATPase XpsE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D27 _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'alpha-beta sandwich, PROTEIN TRANSPORT' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 5 ? ARG A 17 ? SER A 5 ARG A 17 1 ? 13 HELX_P HELX_P2 2 LYS A 21 ? SER A 35 ? LYS A 21 SER A 35 1 ? 15 HELX_P HELX_P3 3 GLY A 38 ? LEU A 46 ? GLY A 38 LEU A 46 1 ? 9 HELX_P HELX_P4 4 SER A 50 ? GLY A 63 ? SER A 50 GLY A 63 1 ? 14 HELX_P HELX_P5 5 ASP A 68 ? LEU A 72 ? ASP A 68 LEU A 72 5 ? 5 HELX_P HELX_P6 6 LEU A 80 ? GLN A 84 ? LEU A 80 GLN A 84 5 ? 5 HELX_P HELX_P7 7 SER A 87 ? HIS A 95 ? SER A 87 HIS A 95 1 ? 9 HELX_P HELX_P8 8 ASP A 115 ? GLY A 127 ? ASP A 115 GLY A 127 1 ? 13 HELX_P HELX_P9 9 LEU A 136 ? TYR A 148 ? LEU A 136 TYR A 148 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A MSE 1 C ? ? ? 1_555 A GLU 2 N ? ? A MSE 1 A GLU 2 1_555 ? ? ? ? ? ? ? 1.369 ? covale2 covale ? ? A GLY 36 C ? ? ? 1_555 A MSE 37 N ? ? A GLY 36 A MSE 37 1_555 ? ? ? ? ? ? ? 1.348 ? covale3 covale ? ? A MSE 37 C ? ? ? 1_555 A GLY 38 N ? ? A MSE 37 A GLY 38 1_555 ? ? ? ? ? ? ? 1.323 ? covale4 covale ? ? A GLU 78 C ? ? ? 1_555 A MSE 79 N ? ? A GLU 78 A MSE 79 1_555 ? ? ? ? ? ? ? 1.336 ? covale5 covale ? ? A MSE 79 C ? ? ? 1_555 A LEU 80 N ? ? A MSE 79 A LEU 80 1_555 ? ? ? ? ? ? ? 1.338 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ARG _struct_mon_prot_cis.label_seq_id 102 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ARG _struct_mon_prot_cis.auth_seq_id 102 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ASP _struct_mon_prot_cis.pdbx_label_seq_id_2 103 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ASP _struct_mon_prot_cis.pdbx_auth_seq_id_2 103 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 29.67 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 96 ? GLU A 101 ? LEU A 96 GLU A 101 A 2 LEU A 106 ? ILE A 110 ? LEU A 106 ILE A 110 A 3 LEU A 130 ? VAL A 134 ? LEU A 130 VAL A 134 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N CYS A 97 ? N CYS A 97 O TRP A 109 ? O TRP A 109 A 2 3 N LEU A 108 ? N LEU A 108 O HIS A 133 ? O HIS A 133 # _atom_sites.entry_id 2D27 _atom_sites.fract_transf_matrix[1][1] 0.010813 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010813 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008080 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 1 1 MSE MSE A . n A 1 2 GLU 2 2 2 GLU GLU A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 ASP 22 22 22 ASP ASP A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ARG 27 27 27 ARG ARG A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ARG 29 29 29 ARG ARG A . n A 1 30 GLN 30 30 30 GLN GLN A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 MSE 37 37 37 MSE MSE A . n A 1 38 GLY 38 38 38 GLY GLY A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 CYS 58 58 58 CYS CYS A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 VAL 61 61 61 VAL VAL A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 PRO 65 65 65 PRO PRO A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 ASP 74 74 74 ASP ASP A . n A 1 75 THR 75 75 75 THR THR A . n A 1 76 PRO 76 76 76 PRO PRO A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 MSE 79 79 79 MSE MSE A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 ARG 89 89 89 ARG ARG A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 GLN 93 93 93 GLN GLN A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 CYS 97 97 97 CYS CYS A . n A 1 98 PRO 98 98 98 PRO PRO A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLU 101 101 101 GLU GLU A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 ARG 105 105 105 ARG ARG A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 LEU 108 108 108 LEU LEU A . n A 1 109 TRP 109 109 109 TRP TRP A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 ASP 112 112 112 ASP ASP A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 ASP 115 115 115 ASP ASP A . n A 1 116 ASP 116 116 116 ASP ASP A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 ALA 121 121 121 ALA ALA A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 ARG 123 123 123 ARG ARG A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 ALA 125 125 125 ALA ALA A . n A 1 126 THR 126 126 126 THR THR A . n A 1 127 GLY 127 127 127 GLY GLY A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 LEU 131 131 131 LEU LEU A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 VAL 134 134 134 VAL VAL A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 LEU 136 136 136 LEU LEU A . n A 1 137 ARG 137 137 137 ARG ARG A . n A 1 138 SER 138 138 138 SER SER A . n A 1 139 GLU 139 139 139 GLU GLU A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 ASP 142 142 142 ASP ASP A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ARG 146 146 146 ARG ARG A . n A 1 147 TRP 147 147 147 TRP TRP A . n A 1 148 TYR 148 148 148 TYR TYR A . n A 1 149 GLY 149 149 ? ? ? A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 1 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 37 A MSE 37 ? MET SELENOMETHIONINE 3 A MSE 79 A MSE 79 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B 2 1,2,3,4 A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 12490 ? 2 MORE -58 ? 2 'SSA (A^2)' 27540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 3 'crystal symmetry operation' 10_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 15_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-09-20 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC . ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran ? 1 PDB_EXTRACT 1.700 'May. 30, 2005' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 2 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 3 SCALEPACK . ? ? ? ? 'data scaling' ? ? ? 4 SHARP . ? ? ? ? phasing ? ? ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CD _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 GLU _pdbx_validate_rmsd_bond.auth_seq_id_1 56 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OE2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 GLU _pdbx_validate_rmsd_bond.auth_seq_id_2 56 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.322 _pdbx_validate_rmsd_bond.bond_target_value 1.252 _pdbx_validate_rmsd_bond.bond_deviation 0.070 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 22 ? ? CG A ASP 22 ? ? OD2 A ASP 22 ? ? 125.06 118.30 6.76 0.90 N 2 1 CB A ASP 24 ? ? CG A ASP 24 ? ? OD2 A ASP 24 ? ? 124.17 118.30 5.87 0.90 N 3 1 NE A ARG 52 ? ? CZ A ARG 52 ? ? NH1 A ARG 52 ? ? 125.79 120.30 5.49 0.50 N 4 1 NE A ARG 52 ? ? CZ A ARG 52 ? ? NH2 A ARG 52 ? ? 110.09 120.30 -10.21 0.50 N 5 1 CA A LEU 96 ? ? CB A LEU 96 ? ? CG A LEU 96 ? ? 131.13 115.30 15.83 2.30 N 6 1 NE A ARG 105 ? ? CZ A ARG 105 ? ? NH2 A ARG 105 ? ? 116.77 120.30 -3.53 0.50 N 7 1 CB A ASP 120 ? ? CG A ASP 120 ? ? OD2 A ASP 120 ? ? 124.85 118.30 6.55 0.90 N 8 1 NE A ARG 123 ? ? CZ A ARG 123 ? ? NH1 A ARG 123 ? ? 125.04 120.30 4.74 0.50 N 9 1 NE A ARG 123 ? ? CZ A ARG 123 ? ? NH2 A ARG 123 ? ? 115.17 120.30 -5.13 0.50 N 10 1 CB A LEU 132 ? ? CG A LEU 132 ? ? CD1 A LEU 132 ? ? 121.55 111.00 10.55 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 3 ? ? -141.70 -69.75 2 1 LEU A 80 ? ? -28.53 134.18 3 1 GLU A 82 ? ? -77.34 37.19 4 1 ASP A 103 ? ? -139.28 -65.34 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLU A 82 ? ? VAL A 83 ? ? 145.67 2 1 VAL A 83 ? ? GLN A 84 ? ? 145.31 3 1 GLN A 84 ? ? GLY A 85 ? ? -148.21 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 82 ? CG ? A GLU 82 CG 2 1 Y 1 A GLU 82 ? CD ? A GLU 82 CD 3 1 Y 1 A GLU 82 ? OE1 ? A GLU 82 OE1 4 1 Y 1 A GLU 82 ? OE2 ? A GLU 82 OE2 5 1 Y 1 A VAL 83 ? CG1 ? A VAL 83 CG1 6 1 Y 1 A VAL 83 ? CG2 ? A VAL 83 CG2 7 1 Y 1 A GLN 84 ? CG ? A GLN 84 CG 8 1 Y 1 A GLN 84 ? CD ? A GLN 84 CD 9 1 Y 1 A GLN 84 ? OE1 ? A GLN 84 OE1 10 1 Y 1 A GLN 84 ? NE2 ? A GLN 84 NE2 # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 149 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 149 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 150 36 HOH HOH A . B 2 HOH 2 151 52 HOH HOH A . B 2 HOH 3 152 56 HOH HOH A . B 2 HOH 4 153 58 HOH HOH A . B 2 HOH 5 154 62 HOH HOH A . B 2 HOH 6 155 65 HOH HOH A . B 2 HOH 7 156 74 HOH HOH A . B 2 HOH 8 157 76 HOH HOH A . B 2 HOH 9 158 78 HOH HOH A . B 2 HOH 10 159 82 HOH HOH A . B 2 HOH 11 160 86 HOH HOH A . B 2 HOH 12 161 90 HOH HOH A . B 2 HOH 13 162 101 HOH HOH A . B 2 HOH 14 163 102 HOH HOH A . B 2 HOH 15 164 104 HOH HOH A . B 2 HOH 16 165 105 HOH HOH A . B 2 HOH 17 166 107 HOH HOH A . B 2 HOH 18 167 108 HOH HOH A . B 2 HOH 19 168 109 HOH HOH A . B 2 HOH 20 169 119 HOH HOH A . B 2 HOH 21 170 120 HOH HOH A . B 2 HOH 22 171 127 HOH HOH A . B 2 HOH 23 172 128 HOH HOH A . B 2 HOH 24 173 130 HOH HOH A . B 2 HOH 25 174 132 HOH HOH A . B 2 HOH 26 175 135 HOH HOH A . B 2 HOH 27 176 136 HOH HOH A . B 2 HOH 28 177 138 HOH HOH A . B 2 HOH 29 178 139 HOH HOH A . B 2 HOH 30 179 156 HOH HOH A . B 2 HOH 31 180 161 HOH HOH A . B 2 HOH 32 181 169 HOH HOH A . B 2 HOH 33 182 179 HOH HOH A . B 2 HOH 34 183 185 HOH HOH A . B 2 HOH 35 184 192 HOH HOH A . B 2 HOH 36 185 195 HOH HOH A . B 2 HOH 37 186 199 HOH HOH A . B 2 HOH 38 187 200 HOH HOH A . B 2 HOH 39 188 207 HOH HOH A . B 2 HOH 40 189 208 HOH HOH A . B 2 HOH 41 190 212 HOH HOH A . B 2 HOH 42 191 213 HOH HOH A . B 2 HOH 43 192 214 HOH HOH A . B 2 HOH 44 193 217 HOH HOH A . B 2 HOH 45 194 223 HOH HOH A . B 2 HOH 46 195 224 HOH HOH A . B 2 HOH 47 196 225 HOH HOH A . B 2 HOH 48 197 228 HOH HOH A . B 2 HOH 49 198 235 HOH HOH A . B 2 HOH 50 199 237 HOH HOH A . B 2 HOH 51 200 242 HOH HOH A . B 2 HOH 52 201 243 HOH HOH A . B 2 HOH 53 202 251 HOH HOH A . B 2 HOH 54 203 255 HOH HOH A . B 2 HOH 55 204 257 HOH HOH A . B 2 HOH 56 205 258 HOH HOH A . B 2 HOH 57 206 259 HOH HOH A . B 2 HOH 58 207 262 HOH HOH A . B 2 HOH 59 208 264 HOH HOH A . B 2 HOH 60 209 271 HOH HOH A . B 2 HOH 61 210 275 HOH HOH A . B 2 HOH 62 211 282 HOH HOH A . B 2 HOH 63 212 287 HOH HOH A . B 2 HOH 64 213 291 HOH HOH A . B 2 HOH 65 214 292 HOH HOH A . B 2 HOH 66 215 295 HOH HOH A . B 2 HOH 67 216 300 HOH HOH A . B 2 HOH 68 217 301 HOH HOH A . B 2 HOH 69 218 302 HOH HOH A . B 2 HOH 70 219 303 HOH HOH A . B 2 HOH 71 220 304 HOH HOH A . B 2 HOH 72 221 306 HOH HOH A . B 2 HOH 73 222 308 HOH HOH A . B 2 HOH 74 223 309 HOH HOH A . B 2 HOH 75 224 310 HOH HOH A . B 2 HOH 76 225 311 HOH HOH A . B 2 HOH 77 226 316 HOH HOH A . B 2 HOH 78 227 317 HOH HOH A . B 2 HOH 79 228 318 HOH HOH A . B 2 HOH 80 229 320 HOH HOH A . B 2 HOH 81 230 321 HOH HOH A . B 2 HOH 82 231 322 HOH HOH A . B 2 HOH 83 232 326 HOH HOH A . B 2 HOH 84 233 331 HOH HOH A . B 2 HOH 85 234 335 HOH HOH A . B 2 HOH 86 235 337 HOH HOH A . B 2 HOH 87 236 338 HOH HOH A . B 2 HOH 88 237 340 HOH HOH A . B 2 HOH 89 238 351 HOH HOH A . B 2 HOH 90 239 356 HOH HOH A . B 2 HOH 91 240 360 HOH HOH A . B 2 HOH 92 241 368 HOH HOH A . B 2 HOH 93 242 369 HOH HOH A . B 2 HOH 94 243 372 HOH HOH A . B 2 HOH 95 244 536 HOH HOH A . B 2 HOH 96 245 537 HOH HOH A . B 2 HOH 97 246 540 HOH HOH A . B 2 HOH 98 247 541 HOH HOH A . B 2 HOH 99 248 543 HOH HOH A . B 2 HOH 100 249 545 HOH HOH A . B 2 HOH 101 250 546 HOH HOH A . B 2 HOH 102 251 547 HOH HOH A . B 2 HOH 103 252 548 HOH HOH A . B 2 HOH 104 253 550 HOH HOH A . B 2 HOH 105 254 551 HOH HOH A . B 2 HOH 106 255 555 HOH HOH A . B 2 HOH 107 256 556 HOH HOH A . B 2 HOH 108 257 557 HOH HOH A . B 2 HOH 109 258 558 HOH HOH A . B 2 HOH 110 259 559 HOH HOH A . B 2 HOH 111 260 560 HOH HOH A . B 2 HOH 112 261 561 HOH HOH A . B 2 HOH 113 262 563 HOH HOH A . B 2 HOH 114 263 565 HOH HOH A . B 2 HOH 115 264 567 HOH HOH A . B 2 HOH 116 265 568 HOH HOH A . B 2 HOH 117 266 569 HOH HOH A . B 2 HOH 118 267 570 HOH HOH A . B 2 HOH 119 268 572 HOH HOH A . B 2 HOH 120 269 573 HOH HOH A . B 2 HOH 121 270 574 HOH HOH A . B 2 HOH 122 271 575 HOH HOH A . B 2 HOH 123 272 576 HOH HOH A . B 2 HOH 124 273 578 HOH HOH A . B 2 HOH 125 274 579 HOH HOH A . B 2 HOH 126 275 580 HOH HOH A . B 2 HOH 127 276 581 HOH HOH A . B 2 HOH 128 277 582 HOH HOH A . B 2 HOH 129 278 583 HOH HOH A . B 2 HOH 130 279 584 HOH HOH A . B 2 HOH 131 280 586 HOH HOH A . B 2 HOH 132 281 587 HOH HOH A . B 2 HOH 133 282 588 HOH HOH A . B 2 HOH 134 283 589 HOH HOH A . B 2 HOH 135 284 590 HOH HOH A . B 2 HOH 136 285 591 HOH HOH A . B 2 HOH 137 286 592 HOH HOH A . B 2 HOH 138 287 595 HOH HOH A . B 2 HOH 139 288 596 HOH HOH A . B 2 HOH 140 289 597 HOH HOH A . B 2 HOH 141 290 599 HOH HOH A . B 2 HOH 142 291 602 HOH HOH A . B 2 HOH 143 292 603 HOH HOH A . B 2 HOH 144 293 607 HOH HOH A . B 2 HOH 145 294 608 HOH HOH A . B 2 HOH 146 295 609 HOH HOH A . B 2 HOH 147 296 611 HOH HOH A . B 2 HOH 148 297 612 HOH HOH A . B 2 HOH 149 298 613 HOH HOH A . B 2 HOH 150 299 615 HOH HOH A . B 2 HOH 151 300 617 HOH HOH A . B 2 HOH 152 301 618 HOH HOH A . B 2 HOH 153 302 619 HOH HOH A . B 2 HOH 154 303 620 HOH HOH A . B 2 HOH 155 304 621 HOH HOH A . B 2 HOH 156 305 622 HOH HOH A . B 2 HOH 157 306 623 HOH HOH A . B 2 HOH 158 307 624 HOH HOH A . B 2 HOH 159 308 625 HOH HOH A . B 2 HOH 160 309 626 HOH HOH A . B 2 HOH 161 310 627 HOH HOH A . B 2 HOH 162 311 629 HOH HOH A . B 2 HOH 163 312 630 HOH HOH A . B 2 HOH 164 313 631 HOH HOH A . B 2 HOH 165 314 634 HOH HOH A . B 2 HOH 166 315 637 HOH HOH A . B 2 HOH 167 316 638 HOH HOH A . B 2 HOH 168 317 639 HOH HOH A . B 2 HOH 169 318 640 HOH HOH A . B 2 HOH 170 319 644 HOH HOH A . B 2 HOH 171 320 645 HOH HOH A . B 2 HOH 172 321 646 HOH HOH A . B 2 HOH 173 322 649 HOH HOH A . B 2 HOH 174 323 651 HOH HOH A . B 2 HOH 175 324 652 HOH HOH A . B 2 HOH 176 325 653 HOH HOH A . B 2 HOH 177 326 655 HOH HOH A . B 2 HOH 178 327 656 HOH HOH A . B 2 HOH 179 328 657 HOH HOH A . B 2 HOH 180 329 658 HOH HOH A . B 2 HOH 181 330 659 HOH HOH A . B 2 HOH 182 331 661 HOH HOH A . B 2 HOH 183 332 662 HOH HOH A . B 2 HOH 184 333 664 HOH HOH A . B 2 HOH 185 334 665 HOH HOH A . B 2 HOH 186 335 668 HOH HOH A . B 2 HOH 187 336 669 HOH HOH A . B 2 HOH 188 337 672 HOH HOH A . B 2 HOH 189 338 673 HOH HOH A . B 2 HOH 190 339 676 HOH HOH A . B 2 HOH 191 340 678 HOH HOH A . B 2 HOH 192 341 680 HOH HOH A . B 2 HOH 193 342 681 HOH HOH A . B 2 HOH 194 343 685 HOH HOH A . B 2 HOH 195 344 686 HOH HOH A . B 2 HOH 196 345 687 HOH HOH A . B 2 HOH 197 346 691 HOH HOH A . B 2 HOH 198 347 692 HOH HOH A . B 2 HOH 199 348 694 HOH HOH A . B 2 HOH 200 349 698 HOH HOH A . B 2 HOH 201 350 699 HOH HOH A . B 2 HOH 202 351 701 HOH HOH A . B 2 HOH 203 352 702 HOH HOH A . B 2 HOH 204 353 707 HOH HOH A . B 2 HOH 205 354 709 HOH HOH A . B 2 HOH 206 355 713 HOH HOH A . B 2 HOH 207 356 714 HOH HOH A . B 2 HOH 208 357 716 HOH HOH A . B 2 HOH 209 358 717 HOH HOH A . B 2 HOH 210 359 719 HOH HOH A . B 2 HOH 211 360 723 HOH HOH A . B 2 HOH 212 361 726 HOH HOH A . B 2 HOH 213 362 730 HOH HOH A . B 2 HOH 214 363 734 HOH HOH A . B 2 HOH 215 364 735 HOH HOH A . B 2 HOH 216 365 737 HOH HOH A . B 2 HOH 217 366 738 HOH HOH A . B 2 HOH 218 367 740 HOH HOH A . #