HEADER METAL TRANSPORT 05-SEP-05 2D2A TITLE CRYSTAL STRUCTURE OF ESCHERICHIA COLI SUFA INVOLVED IN BIOSYNTHESIS OF TITLE 2 IRON-SULFUR CLUSTERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUFA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: C41(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS IRON-SULFUR CLUSTER, IRON, SUF, SUFA, ISCA, YADR, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR K.WADA,Y.HASEGAWA,Z.GONG,Y.MINAMI,K.FUKUYAMA,Y.TAKAHASHI REVDAT 4 25-OCT-23 2D2A 1 SEQADV REVDAT 3 11-OCT-17 2D2A 1 REMARK REVDAT 2 24-FEB-09 2D2A 1 VERSN REVDAT 1 13-DEC-05 2D2A 0 JRNL AUTH K.WADA,Y.HASEGAWA,Z.GONG,Y.MINAMI,K.FUKUYAMA,Y.TAKAHASHI JRNL TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI SUFA INVOLVED IN JRNL TITL 2 BIOSYNTHESIS OF IRON-SULFUR CLUSTERS: IMPLICATIONS FOR A JRNL TITL 3 FUNCTIONAL DIMER JRNL REF FEBS LETT. V. 579 6543 2005 JRNL REFN ISSN 0014-5793 JRNL PMID 16298366 JRNL DOI 10.1016/J.FEBSLET.2005.10.046 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 421277.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 7692 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.600 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1021 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 125 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1640 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 37 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.42000 REMARK 3 B22 (A**2) : 5.78000 REMARK 3 B33 (A**2) : -2.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.25 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.047 REMARK 3 BOND ANGLES (DEGREES) : 3.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 3.050 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 43.83 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D2A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-SEP-05. REMARK 100 THE DEPOSITION ID IS D_1000024898. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8136 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.34900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1S98 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG2000MME, PH 4.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 12.58100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.00650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.00650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 12.58100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.32400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -44.25000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 61.00650 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 HIS A -7 REMARK 465 ILE A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 ASP A -2 REMARK 465 LEU A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 MET A 3 REMARK 465 HIS A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 PHE A 8 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 HIS B -7 REMARK 465 ILE B -6 REMARK 465 ASP B -5 REMARK 465 ASP B -4 REMARK 465 ASP B -3 REMARK 465 ASP B -2 REMARK 465 LEU B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 MET B 3 REMARK 465 HIS B 4 REMARK 465 THR B 48 REMARK 465 GLY B 49 REMARK 465 CYS B 50 REMARK 465 ALA B 51 REMARK 465 GLN B 111 REMARK 465 ASN B 112 REMARK 465 GLU B 113 REMARK 465 CYS B 114 REMARK 465 GLY B 115 REMARK 465 CYS B 116 REMARK 465 GLY B 117 REMARK 465 GLU B 118 REMARK 465 SER B 119 REMARK 465 PHE B 120 REMARK 465 GLY B 121 REMARK 465 VAL B 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 9 CG OD1 ND2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 GLN A 111 CG CD OE1 NE2 REMARK 470 GLU A 113 CG CD OE1 OE2 REMARK 470 SER B 5 OG REMARK 470 GLN B 11 CG CD OE1 NE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 10 CA PRO A 10 C 0.130 REMARK 500 GLN A 11 CB GLN A 11 CG 0.266 REMARK 500 GLN A 11 CG GLN A 11 CD 0.261 REMARK 500 ASP A 12 CB ASP A 12 CG 0.166 REMARK 500 THR A 19 C THR A 19 O -0.134 REMARK 500 ARG A 29 CZ ARG A 29 NH2 0.125 REMARK 500 VAL A 32 CA VAL A 32 CB -0.158 REMARK 500 PRO A 36 CD PRO A 36 N 0.105 REMARK 500 PRO A 36 C PRO A 36 O 0.124 REMARK 500 LYS A 46 CA LYS A 46 CB 0.178 REMARK 500 GLN A 47 CB GLN A 47 CG 0.190 REMARK 500 GLN A 47 CG GLN A 47 CD 0.311 REMARK 500 GLY A 49 CA GLY A 49 C 0.148 REMARK 500 CYS A 50 CB CYS A 50 SG 0.125 REMARK 500 PHE A 53 CB PHE A 53 CG 0.133 REMARK 500 PHE A 53 CG PHE A 53 CD2 0.113 REMARK 500 PHE A 53 CE1 PHE A 53 CZ 0.139 REMARK 500 TYR A 55 CG TYR A 55 CD1 -0.092 REMARK 500 TYR A 55 CE2 TYR A 55 CD2 0.106 REMARK 500 VAL A 56 CB VAL A 56 CG1 0.131 REMARK 500 ASP A 58 CG ASP A 58 OD1 0.216 REMARK 500 SER A 59 CA SER A 59 CB -0.095 REMARK 500 SER A 59 CB SER A 59 OG -0.125 REMARK 500 VAL A 60 CB VAL A 60 CG2 -0.134 REMARK 500 SER A 61 CB SER A 61 OG -0.084 REMARK 500 GLU A 62 CG GLU A 62 CD 0.122 REMARK 500 GLU A 62 CD GLU A 62 OE2 0.131 REMARK 500 ASP A 66 CB ASP A 66 CG 0.291 REMARK 500 PHE A 70 CE1 PHE A 70 CZ 0.132 REMARK 500 GLU A 71 CD GLU A 71 OE2 0.089 REMARK 500 ASP A 73 CB ASP A 73 CG 0.317 REMARK 500 ASP A 73 C ASP A 73 O -0.128 REMARK 500 PHE A 86 CB PHE A 86 CG 0.137 REMARK 500 PHE A 86 CD1 PHE A 86 CE1 0.174 REMARK 500 PHE A 86 CE1 PHE A 86 CZ 0.131 REMARK 500 PHE A 86 CZ PHE A 86 CE2 0.115 REMARK 500 PHE A 86 CE2 PHE A 86 CD2 0.120 REMARK 500 GLU A 91 CD GLU A 91 OE1 0.103 REMARK 500 VAL A 95 CB VAL A 95 CG1 -0.151 REMARK 500 PHE A 103 CG PHE A 103 CD1 0.090 REMARK 500 PHE A 103 CZ PHE A 103 CE2 0.127 REMARK 500 GLU A 118 C GLU A 118 O -0.152 REMARK 500 GLY A 121 C GLY A 121 O 0.101 REMARK 500 PHE B 103 CB PHE B 103 CG 0.117 REMARK 500 LYS B 104 CD LYS B 104 CE 0.199 REMARK 500 LYS B 104 CE LYS B 104 NZ 0.193 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 12 CB - CG - OD2 ANGL. DEV. = 9.6 DEGREES REMARK 500 GLN A 16 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU A 18 CA - CB - CG ANGL. DEV. = 16.8 DEGREES REMARK 500 ARG A 29 NE - CZ - NH1 ANGL. DEV. = -10.4 DEGREES REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = 9.1 DEGREES REMARK 500 PRO A 36 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 CYS A 50 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 GLY A 54 N - CA - C ANGL. DEV. = -17.0 DEGREES REMARK 500 LEU A 57 CB - CG - CD2 ANGL. DEV. = 14.7 DEGREES REMARK 500 VAL A 60 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP A 66 OD1 - CG - OD2 ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 66 CB - CG - OD2 ANGL. DEV. = 14.1 DEGREES REMARK 500 ASP A 67 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 73 OD1 - CG - OD2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP A 73 CB - CG - OD1 ANGL. DEV. = 12.5 DEGREES REMARK 500 PRO A 85 N - CD - CG ANGL. DEV. = -11.3 DEGREES REMARK 500 ASP A 88 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = 12.9 DEGREES REMARK 500 ASP A 93 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 96 NE - CZ - NH1 ANGL. DEV. = -6.5 DEGREES REMARK 500 LEU A 99 CA - CB - CG ANGL. DEV. = 21.2 DEGREES REMARK 500 ALA A 110 CA - C - N ANGL. DEV. = 17.9 DEGREES REMARK 500 GLN A 111 CA - C - N ANGL. DEV. = 15.5 DEGREES REMARK 500 GLN A 111 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 CYS A 114 CA - CB - SG ANGL. DEV. = -15.0 DEGREES REMARK 500 SER A 119 N - CA - CB ANGL. DEV. = -14.7 DEGREES REMARK 500 VAL A 122 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 10 -65.38 -127.87 REMARK 500 GLN A 11 -147.23 -178.33 REMARK 500 ASP A 12 91.23 60.13 REMARK 500 PHE A 13 3.00 -160.79 REMARK 500 ALA A 14 94.36 37.37 REMARK 500 CYS A 50 -99.06 -77.98 REMARK 500 ALA A 51 32.72 -98.91 REMARK 500 PHE A 53 122.85 -177.34 REMARK 500 GLN A 82 4.30 -60.96 REMARK 500 ILE A 87 16.73 -141.31 REMARK 500 GLN A 111 172.69 43.46 REMARK 500 HIS B 72 117.74 -170.56 REMARK 500 LYS B 109 41.47 -87.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 32 ALA A 33 -148.59 REMARK 500 GLY A 49 CYS A 50 149.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 2D2A A 1 122 UNP P77667 SUFA_ECOLI 1 122 DBREF 2D2A B 1 122 UNP P77667 SUFA_ECOLI 1 122 SEQADV 2D2A MET A -22 UNP P77667 EXPRESSION TAG SEQADV 2D2A GLY A -21 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -20 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -19 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -18 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -17 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -16 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -15 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -14 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -13 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -12 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -11 UNP P77667 EXPRESSION TAG SEQADV 2D2A SER A -10 UNP P77667 EXPRESSION TAG SEQADV 2D2A SER A -9 UNP P77667 EXPRESSION TAG SEQADV 2D2A GLY A -8 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A -7 UNP P77667 EXPRESSION TAG SEQADV 2D2A ILE A -6 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP A -5 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP A -4 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP A -3 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP A -2 UNP P77667 EXPRESSION TAG SEQADV 2D2A LEU A -1 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS A 0 UNP P77667 EXPRESSION TAG SEQADV 2D2A MET B -22 UNP P77667 EXPRESSION TAG SEQADV 2D2A GLY B -21 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -20 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -19 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -18 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -17 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -16 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -15 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -14 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -13 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -12 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -11 UNP P77667 EXPRESSION TAG SEQADV 2D2A SER B -10 UNP P77667 EXPRESSION TAG SEQADV 2D2A SER B -9 UNP P77667 EXPRESSION TAG SEQADV 2D2A GLY B -8 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B -7 UNP P77667 EXPRESSION TAG SEQADV 2D2A ILE B -6 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP B -5 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP B -4 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP B -3 UNP P77667 EXPRESSION TAG SEQADV 2D2A ASP B -2 UNP P77667 EXPRESSION TAG SEQADV 2D2A LEU B -1 UNP P77667 EXPRESSION TAG SEQADV 2D2A HIS B 0 UNP P77667 EXPRESSION TAG SEQRES 1 A 145 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 145 SER GLY HIS ILE ASP ASP ASP ASP LEU HIS MET ASP MET SEQRES 3 A 145 HIS SER GLY THR PHE ASN PRO GLN ASP PHE ALA TRP GLN SEQRES 4 A 145 GLY LEU THR LEU THR PRO ALA ALA ALA ILE HIS ILE ARG SEQRES 5 A 145 GLU LEU VAL ALA LYS GLN PRO GLY MET VAL GLY VAL ARG SEQRES 6 A 145 LEU GLY VAL LYS GLN THR GLY CYS ALA GLY PHE GLY TYR SEQRES 7 A 145 VAL LEU ASP SER VAL SER GLU PRO ASP LYS ASP ASP LEU SEQRES 8 A 145 LEU PHE GLU HIS ASP GLY ALA LYS LEU PHE VAL PRO LEU SEQRES 9 A 145 GLN ALA MET PRO PHE ILE ASP GLY THR GLU VAL ASP PHE SEQRES 10 A 145 VAL ARG GLU GLY LEU ASN GLN ILE PHE LYS PHE HIS ASN SEQRES 11 A 145 PRO LYS ALA GLN ASN GLU CYS GLY CYS GLY GLU SER PHE SEQRES 12 A 145 GLY VAL SEQRES 1 B 145 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 B 145 SER GLY HIS ILE ASP ASP ASP ASP LEU HIS MET ASP MET SEQRES 3 B 145 HIS SER GLY THR PHE ASN PRO GLN ASP PHE ALA TRP GLN SEQRES 4 B 145 GLY LEU THR LEU THR PRO ALA ALA ALA ILE HIS ILE ARG SEQRES 5 B 145 GLU LEU VAL ALA LYS GLN PRO GLY MET VAL GLY VAL ARG SEQRES 6 B 145 LEU GLY VAL LYS GLN THR GLY CYS ALA GLY PHE GLY TYR SEQRES 7 B 145 VAL LEU ASP SER VAL SER GLU PRO ASP LYS ASP ASP LEU SEQRES 8 B 145 LEU PHE GLU HIS ASP GLY ALA LYS LEU PHE VAL PRO LEU SEQRES 9 B 145 GLN ALA MET PRO PHE ILE ASP GLY THR GLU VAL ASP PHE SEQRES 10 B 145 VAL ARG GLU GLY LEU ASN GLN ILE PHE LYS PHE HIS ASN SEQRES 11 B 145 PRO LYS ALA GLN ASN GLU CYS GLY CYS GLY GLU SER PHE SEQRES 12 B 145 GLY VAL FORMUL 3 HOH *37(H2 O) HELIX 1 1 THR A 21 GLN A 35 1 15 HELIX 2 2 ALA A 83 ASP A 88 1 6 HELIX 3 3 THR B 21 GLN B 35 1 15 HELIX 4 4 ALA B 83 ASP B 88 1 6 SHEET 1 A 3 THR A 19 LEU A 20 0 SHEET 2 A 3 GLU A 91 GLU A 97 1 O VAL A 92 N THR A 19 SHEET 3 A 3 ASN A 100 HIS A 106 -1 O ILE A 102 N VAL A 95 SHEET 1 B 4 GLY A 52 VAL A 60 0 SHEET 2 B 4 GLY A 40 THR A 48 -1 N ARG A 42 O ASP A 58 SHEET 3 B 4 ALA A 75 PRO A 80 1 O PHE A 78 N VAL A 41 SHEET 4 B 4 ASP A 67 HIS A 72 -1 N LEU A 68 O VAL A 79 SHEET 1 C 4 SER A 119 GLY A 121 0 SHEET 2 C 4 ASN B 100 HIS B 106 -1 O PHE B 103 N PHE A 120 SHEET 3 C 4 GLU B 91 GLU B 97 -1 N GLU B 97 O ASN B 100 SHEET 4 C 4 THR B 19 LEU B 20 1 N THR B 19 O VAL B 92 SHEET 1 D 4 GLY B 54 VAL B 60 0 SHEET 2 D 4 GLY B 40 LYS B 46 -1 N GLY B 44 O VAL B 56 SHEET 3 D 4 ALA B 75 PRO B 80 1 O PHE B 78 N VAL B 41 SHEET 4 D 4 ASP B 67 HIS B 72 -1 N LEU B 68 O VAL B 79 CRYST1 25.162 88.500 122.013 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.039742 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008196 0.00000