data_2D4N # _entry.id 2D4N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D4N pdb_00002d4n 10.2210/pdb2d4n/pdb RCSB RCSB024981 ? ? WWPDB D_1000024981 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 2AKV 'THE FULL LENGTH PROTEIN COMPLEXED WITH REACTION INTERMEDIATE' unspecified PDB 2D4L 'THE FULL LENGTH PROTEIN, APO' unspecified PDB 2D4M 'THE FULL LENGTH PROTEIN, APO' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D4N _pdbx_database_status.recvd_initial_deposition_date 2005-10-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nemeth, V.' 1 'Barabas, O.' 2 'Vertessy, G.B.' 3 # _citation.id primary _citation.title 'Flexible segments modulate co-folding of dUTPase and nucleocapsid proteins.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 495 _citation.page_last 505 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17169987 _citation.pdbx_database_id_DOI 10.1093/nar/gkl1074 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nemeth-Pongracz, V.' 1 ? primary 'Barabas, O.' 2 ? primary 'Fuxreiter, M.' 3 ? primary 'Simon, I.' 4 ? primary 'Pichova, I.' 5 ? primary 'Rumlova, M.' 6 ? primary 'Zabranska, H.' 7 ? primary 'Svergun, D.' 8 ? primary 'Petoukhov, M.' 9 ? primary 'Harmat, V.' 10 ? primary 'Klement, E.' 11 ? primary 'Hunyadi-Gulyas, E.' 12 ? primary 'Medzihradszky, K.F.' 13 ? primary 'Konya, E.' 14 ? primary 'Vertessy, B.G.' 15 ? # _cell.entry_id 2D4N _cell.length_a 61.071 _cell.length_b 61.071 _cell.length_c 64.357 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D4N _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man DU 16155.373 1 3.6.1.23 N83K 'residues 83-234' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; 467.157 1 ? ? ? ? 4 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 5 water nat water 18.015 137 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Deoxyuridine 5'-Triphosphate Nucleotido Hydrolase ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY ; _entity_poly.pdbx_seq_one_letter_code_can ;KRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 ARG n 1 3 VAL n 1 4 GLU n 1 5 GLY n 1 6 PRO n 1 7 ALA n 1 8 PRO n 1 9 GLY n 1 10 PRO n 1 11 GLU n 1 12 THR n 1 13 SER n 1 14 LEU n 1 15 TRP n 1 16 GLY n 1 17 SER n 1 18 GLN n 1 19 LEU n 1 20 CYS n 1 21 SER n 1 22 SER n 1 23 GLN n 1 24 GLN n 1 25 LYS n 1 26 GLN n 1 27 PRO n 1 28 ILE n 1 29 SER n 1 30 LYS n 1 31 LEU n 1 32 THR n 1 33 ARG n 1 34 ALA n 1 35 THR n 1 36 PRO n 1 37 GLY n 1 38 SER n 1 39 ALA n 1 40 GLY n 1 41 LEU n 1 42 ASP n 1 43 LEU n 1 44 CYS n 1 45 SER n 1 46 THR n 1 47 SER n 1 48 HIS n 1 49 THR n 1 50 VAL n 1 51 LEU n 1 52 THR n 1 53 PRO n 1 54 GLU n 1 55 MET n 1 56 GLY n 1 57 PRO n 1 58 GLN n 1 59 ALA n 1 60 LEU n 1 61 SER n 1 62 THR n 1 63 GLY n 1 64 ILE n 1 65 TYR n 1 66 GLY n 1 67 PRO n 1 68 LEU n 1 69 PRO n 1 70 PRO n 1 71 ASN n 1 72 THR n 1 73 PHE n 1 74 GLY n 1 75 LEU n 1 76 ILE n 1 77 LEU n 1 78 GLY n 1 79 ARG n 1 80 SER n 1 81 SER n 1 82 ILE n 1 83 THR n 1 84 MET n 1 85 LYS n 1 86 GLY n 1 87 LEU n 1 88 GLN n 1 89 VAL n 1 90 TYR n 1 91 PRO n 1 92 GLY n 1 93 VAL n 1 94 ILE n 1 95 ASP n 1 96 ASN n 1 97 ASP n 1 98 TYR n 1 99 THR n 1 100 GLY n 1 101 GLU n 1 102 ILE n 1 103 LYS n 1 104 ILE n 1 105 MET n 1 106 ALA n 1 107 LYS n 1 108 ALA n 1 109 VAL n 1 110 ASN n 1 111 ASN n 1 112 ILE n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 SER n 1 117 GLN n 1 118 GLY n 1 119 ASN n 1 120 ARG n 1 121 ILE n 1 122 ALA n 1 123 GLN n 1 124 LEU n 1 125 ILE n 1 126 LEU n 1 127 LEU n 1 128 PRO n 1 129 LEU n 1 130 ILE n 1 131 GLU n 1 132 THR n 1 133 ASP n 1 134 ASN n 1 135 LYS n 1 136 VAL n 1 137 GLN n 1 138 GLN n 1 139 PRO n 1 140 TYR n 1 141 ARG n 1 142 GLY n 1 143 GLN n 1 144 GLY n 1 145 SER n 1 146 PHE n 1 147 GLY n 1 148 SER n 1 149 SER n 1 150 ASP n 1 151 ILE n 1 152 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Betaretrovirus _entity_src_gen.pdbx_gene_src_gene gag-pro _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mason-Pfizer monkey virus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11855 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET22B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code NP_954564 _struct_ref.pdbx_db_accession 40018527 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;NRVEGPAPGPETSLWGSQLCSSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRS SITMKGLQVYPGVIDNDYTGEIKIMAKAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGSSDIY ; _struct_ref.pdbx_align_begin 83 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D4N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 40018527 _struct_ref_seq.db_align_beg 83 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 234 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 83 _struct_ref_seq.pdbx_auth_seq_align_end 234 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2D4N _struct_ref_seq_dif.mon_id LYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name GB _struct_ref_seq_dif.pdbx_seq_db_accession_code 40018527 _struct_ref_seq_dif.db_mon_id ASN _struct_ref_seq_dif.pdbx_seq_db_seq_num 83 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 83 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DUP non-polymer . ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; ? 'C9 H16 N3 O13 P3' 467.157 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D4N _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.14 _exptl_crystal.density_percent_sol 42.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details 'PEG 8000, AMMONIUM CHLORIDE, TRIS, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2004-11-26 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.8128 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X11' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, HAMBURG' _diffrn_source.pdbx_synchrotron_beamline X11 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.8128 # _reflns.entry_id 2D4N _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 52.93 _reflns.d_resolution_high 1.52 _reflns.number_obs 20787 _reflns.number_all 20787 _reflns.percent_possible_obs 98.72 _reflns.pdbx_Rmerge_I_obs 0.076 _reflns.pdbx_Rsym_value 0.057 _reflns.pdbx_netI_over_sigmaI 12.34 _reflns.B_iso_Wilson_estimate 25.00 _reflns.pdbx_redundancy 2.66 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.52 _reflns_shell.d_res_low 1.61 _reflns_shell.percent_possible_all 98.23 _reflns_shell.Rmerge_I_obs 0.442 _reflns_shell.pdbx_Rsym_value 0.334 _reflns_shell.meanI_over_sigI_obs 2.86 _reflns_shell.pdbx_redundancy 2.13 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 3282 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2D4N _refine.ls_number_reflns_obs 19296 _refine.ls_number_reflns_all 19296 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.53 _refine.ls_percent_reflns_obs 98.97 _refine.ls_R_factor_obs 0.16566 _refine.ls_R_factor_all 0.16566 _refine.ls_R_factor_R_work 0.16443 _refine.ls_R_factor_R_free 0.18717 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.4 _refine.ls_number_reflns_R_free 1097 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.971 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 22.778 _refine.aniso_B[1][1] 0.61 _refine.aniso_B[2][2] 0.61 _refine.aniso_B[3][3] -0.91 _refine.aniso_B[1][2] 0.30 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS, rigid body refinement' _refine.pdbx_starting_model 2D4L _refine.pdbx_method_to_determine_struct 'rigid body refinement' _refine.pdbx_isotropic_thermal_model 'TLS and isotropic individual' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'from starting model' _refine.pdbx_overall_ESU_R 0.067 _refine.pdbx_overall_ESU_R_Free 0.068 _refine.overall_SU_ML 0.050 _refine.overall_SU_B 2.454 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 826 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 37 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 1000 _refine_hist.d_res_high 1.53 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.019 0.022 ? 910 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.911 2.050 ? 1255 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 5.752 5.000 ? 124 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 36.353 25.769 ? 26 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.110 15.000 ? 153 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 30.573 15.000 ? 3 'X-RAY DIFFRACTION' ? r_chiral_restr 0.141 0.200 ? 154 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.011 0.020 ? 645 'X-RAY DIFFRACTION' ? r_nbd_refined 0.235 0.200 ? 395 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.315 0.200 ? 637 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.218 0.200 ? 100 'X-RAY DIFFRACTION' ? r_metal_ion_refined 0.002 0.200 ? 1 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.208 0.200 ? 76 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.172 0.200 ? 22 'X-RAY DIFFRACTION' ? r_mcbond_it 2.624 3.000 ? 596 'X-RAY DIFFRACTION' ? r_mcangle_it 3.883 10.000 ? 964 'X-RAY DIFFRACTION' ? r_scbond_it 8.097 50.000 ? 341 'X-RAY DIFFRACTION' ? r_scangle_it 10.457 50.000 ? 286 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.530 _refine_ls_shell.d_res_low 1.570 _refine_ls_shell.number_reflns_R_work 1409 _refine_ls_shell.R_factor_R_work 0.245 _refine_ls_shell.percent_reflns_obs 99.87 _refine_ls_shell.R_factor_R_free 0.299 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 79 _refine_ls_shell.number_reflns_obs 1488 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2D4N _struct.title 'Crystal Structure of M-PMV dUTPase complexed with dUPNPP, substrate analogue' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D4N _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'jelly roll, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a trimer generated from the monomer in the asymmetric unit by the operations: 2-y,2+x-y,z and -x+y,2-x,z ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 29 ? LEU A 31 ? SER A 111 LEU A 113 5 ? 3 HELX_P HELX_P2 2 THR A 52 ? GLY A 56 ? THR A 134 GLY A 138 5 ? 5 HELX_P HELX_P3 3 ARG A 79 ? LYS A 85 ? ARG A 161 LYS A 167 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C DUP . O2G ? ? ? 1_555 B MG . MG ? ? A DUP 777 A MG 999 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc2 metalc ? ? C DUP . O1B ? ? ? 1_555 B MG . MG ? ? A DUP 777 A MG 999 1_555 ? ? ? ? ? ? ? 2.050 ? ? metalc3 metalc ? ? C DUP . O1A ? ? ? 1_555 B MG . MG ? ? A DUP 777 A MG 999 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 999 A HOH 1127 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 999 A HOH 1128 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 999 A HOH 1130 1_555 ? ? ? ? ? ? ? 2.121 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 66 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 148 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 67 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 149 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 10.87 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 26 ? PRO A 27 ? GLN A 108 PRO A 109 A 2 GLN A 58 ? TYR A 65 ? GLN A 140 TYR A 147 A 3 GLU A 101 ? ALA A 108 ? GLU A 183 ALA A 190 A 4 LEU A 87 ? VAL A 89 ? LEU A 169 VAL A 171 B 1 LEU A 41 ? CYS A 44 ? LEU A 123 CYS A 126 B 2 ARG A 120 ? PRO A 128 ? ARG A 202 PRO A 210 B 3 THR A 72 ? LEU A 77 ? THR A 154 LEU A 159 B 4 GLY A 92 ? ILE A 94 ? GLY A 174 ILE A 176 C 1 THR A 49 ? LEU A 51 ? THR A 131 LEU A 133 C 2 VAL A 113 ? VAL A 115 ? VAL A 195 VAL A 197 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 26 ? N GLN A 108 O TYR A 65 ? O TYR A 147 A 2 3 N ILE A 64 ? N ILE A 146 O ILE A 102 ? O ILE A 184 A 3 4 O LYS A 107 ? O LYS A 189 N GLN A 88 ? N GLN A 170 B 1 2 N LEU A 43 ? N LEU A 125 O ALA A 122 ? O ALA A 204 B 2 3 O ILE A 125 ? O ILE A 207 N LEU A 75 ? N LEU A 157 B 3 4 N ILE A 76 ? N ILE A 158 O GLY A 92 ? O GLY A 174 C 1 2 N THR A 49 ? N THR A 131 O VAL A 115 ? O VAL A 197 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 999 ? 4 'BINDING SITE FOR RESIDUE MG A 999' AC2 Software A DUP 777 ? 23 'BINDING SITE FOR RESIDUE DUP A 777' AC3 Software A TRS 1001 ? 11 'BINDING SITE FOR RESIDUE TRS A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 DUP C . ? DUP A 777 . ? 1_555 ? 2 AC1 4 HOH E . ? HOH A 1127 . ? 1_555 ? 3 AC1 4 HOH E . ? HOH A 1128 . ? 1_555 ? 4 AC1 4 HOH E . ? HOH A 1130 . ? 1_555 ? 5 AC2 23 ARG A 79 ? ARG A 161 . ? 3_575 ? 6 AC2 23 SER A 80 ? SER A 162 . ? 3_575 ? 7 AC2 23 SER A 81 ? SER A 163 . ? 3_575 ? 8 AC2 23 GLY A 92 ? GLY A 174 . ? 1_555 ? 9 AC2 23 VAL A 93 ? VAL A 175 . ? 1_555 ? 10 AC2 23 ILE A 94 ? ILE A 176 . ? 1_555 ? 11 AC2 23 ASP A 95 ? ASP A 177 . ? 1_555 ? 12 AC2 23 TYR A 98 ? TYR A 180 . ? 1_555 ? 13 AC2 23 GLU A 101 ? GLU A 183 . ? 1_555 ? 14 AC2 23 ILE A 102 ? ILE A 184 . ? 1_555 ? 15 AC2 23 LYS A 103 ? LYS A 185 . ? 1_555 ? 16 AC2 23 MET A 105 ? MET A 187 . ? 1_555 ? 17 AC2 23 GLN A 123 ? GLN A 205 . ? 3_575 ? 18 AC2 23 MG B . ? MG A 999 . ? 1_555 ? 19 AC2 23 HOH E . ? HOH A 1002 . ? 1_555 ? 20 AC2 23 HOH E . ? HOH A 1010 . ? 1_555 ? 21 AC2 23 HOH E . ? HOH A 1013 . ? 1_555 ? 22 AC2 23 HOH E . ? HOH A 1077 . ? 1_555 ? 23 AC2 23 HOH E . ? HOH A 1103 . ? 1_555 ? 24 AC2 23 HOH E . ? HOH A 1127 . ? 1_555 ? 25 AC2 23 HOH E . ? HOH A 1128 . ? 1_555 ? 26 AC2 23 HOH E . ? HOH A 1130 . ? 1_555 ? 27 AC2 23 HOH E . ? HOH A 1131 . ? 1_555 ? 28 AC3 11 GLN A 88 ? GLN A 170 . ? 1_555 ? 29 AC3 11 GLN A 88 ? GLN A 170 . ? 3_575 ? 30 AC3 11 GLN A 88 ? GLN A 170 . ? 2_775 ? 31 AC3 11 VAL A 89 ? VAL A 171 . ? 3_575 ? 32 AC3 11 VAL A 89 ? VAL A 171 . ? 1_555 ? 33 AC3 11 VAL A 89 ? VAL A 171 . ? 2_775 ? 34 AC3 11 TYR A 90 ? TYR A 172 . ? 1_555 ? 35 AC3 11 TYR A 90 ? TYR A 172 . ? 3_575 ? 36 AC3 11 PRO A 91 ? PRO A 173 . ? 2_775 ? 37 AC3 11 PRO A 91 ? PRO A 173 . ? 3_575 ? 38 AC3 11 PRO A 91 ? PRO A 173 . ? 1_555 ? # _database_PDB_matrix.entry_id 2D4N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D4N _atom_sites.fract_transf_matrix[1][1] 0.016374 _atom_sites.fract_transf_matrix[1][2] 0.009454 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018908 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015538 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 83 ? ? ? A . n A 1 2 ARG 2 84 ? ? ? A . n A 1 3 VAL 3 85 ? ? ? A . n A 1 4 GLU 4 86 ? ? ? A . n A 1 5 GLY 5 87 ? ? ? A . n A 1 6 PRO 6 88 ? ? ? A . n A 1 7 ALA 7 89 ? ? ? A . n A 1 8 PRO 8 90 ? ? ? A . n A 1 9 GLY 9 91 ? ? ? A . n A 1 10 PRO 10 92 ? ? ? A . n A 1 11 GLU 11 93 ? ? ? A . n A 1 12 THR 12 94 ? ? ? A . n A 1 13 SER 13 95 ? ? ? A . n A 1 14 LEU 14 96 ? ? ? A . n A 1 15 TRP 15 97 ? ? ? A . n A 1 16 GLY 16 98 ? ? ? A . n A 1 17 SER 17 99 ? ? ? A . n A 1 18 GLN 18 100 ? ? ? A . n A 1 19 LEU 19 101 ? ? ? A . n A 1 20 CYS 20 102 ? ? ? A . n A 1 21 SER 21 103 ? ? ? A . n A 1 22 SER 22 104 ? ? ? A . n A 1 23 GLN 23 105 ? ? ? A . n A 1 24 GLN 24 106 ? ? ? A . n A 1 25 LYS 25 107 106 LYS LYS A . n A 1 26 GLN 26 108 107 GLN GLN A . n A 1 27 PRO 27 109 108 PRO PRO A . n A 1 28 ILE 28 110 109 ILE ILE A . n A 1 29 SER 29 111 110 SER SER A . n A 1 30 LYS 30 112 111 LYS LYS A . n A 1 31 LEU 31 113 112 LEU LEU A . n A 1 32 THR 32 114 113 THR THR A . n A 1 33 ARG 33 115 114 ARG ARG A . n A 1 34 ALA 34 116 115 ALA ALA A . n A 1 35 THR 35 117 116 THR THR A . n A 1 36 PRO 36 118 117 PRO PRO A . n A 1 37 GLY 37 119 118 GLY GLY A . n A 1 38 SER 38 120 119 SER SER A . n A 1 39 ALA 39 121 120 ALA ALA A . n A 1 40 GLY 40 122 121 GLY GLY A . n A 1 41 LEU 41 123 122 LEU LEU A . n A 1 42 ASP 42 124 123 ASP ASP A . n A 1 43 LEU 43 125 124 LEU LEU A . n A 1 44 CYS 44 126 125 CYS CYS A . n A 1 45 SER 45 127 126 SER SER A . n A 1 46 THR 46 128 127 THR THR A . n A 1 47 SER 47 129 128 SER SER A . n A 1 48 HIS 48 130 129 HIS HIS A . n A 1 49 THR 49 131 130 THR THR A . n A 1 50 VAL 50 132 131 VAL VAL A . n A 1 51 LEU 51 133 132 LEU LEU A . n A 1 52 THR 52 134 133 THR THR A . n A 1 53 PRO 53 135 134 PRO PRO A . n A 1 54 GLU 54 136 135 GLU GLU A . n A 1 55 MET 55 137 136 MET MET A . n A 1 56 GLY 56 138 137 GLY GLY A . n A 1 57 PRO 57 139 138 PRO PRO A . n A 1 58 GLN 58 140 139 GLN GLN A . n A 1 59 ALA 59 141 140 ALA ALA A . n A 1 60 LEU 60 142 141 LEU LEU A . n A 1 61 SER 61 143 142 SER SER A . n A 1 62 THR 62 144 143 THR THR A . n A 1 63 GLY 63 145 144 GLY GLY A . n A 1 64 ILE 64 146 145 ILE ILE A . n A 1 65 TYR 65 147 146 TYR TYR A . n A 1 66 GLY 66 148 147 GLY GLY A . n A 1 67 PRO 67 149 148 PRO PRO A . n A 1 68 LEU 68 150 149 LEU LEU A . n A 1 69 PRO 69 151 150 PRO PRO A . n A 1 70 PRO 70 152 151 PRO PRO A . n A 1 71 ASN 71 153 152 ASN ASN A . n A 1 72 THR 72 154 153 THR THR A . n A 1 73 PHE 73 155 154 PHE PHE A . n A 1 74 GLY 74 156 155 GLY GLY A . n A 1 75 LEU 75 157 156 LEU LEU A . n A 1 76 ILE 76 158 157 ILE ILE A . n A 1 77 LEU 77 159 158 LEU LEU A . n A 1 78 GLY 78 160 159 GLY GLY A . n A 1 79 ARG 79 161 160 ARG ARG A . n A 1 80 SER 80 162 161 SER SER A . n A 1 81 SER 81 163 162 SER SER A . n A 1 82 ILE 82 164 163 ILE ILE A . n A 1 83 THR 83 165 164 THR THR A . n A 1 84 MET 84 166 165 MET MET A . n A 1 85 LYS 85 167 166 LYS LYS A . n A 1 86 GLY 86 168 167 GLY GLY A . n A 1 87 LEU 87 169 168 LEU LEU A . n A 1 88 GLN 88 170 169 GLN GLN A . n A 1 89 VAL 89 171 170 VAL VAL A . n A 1 90 TYR 90 172 171 TYR TYR A . n A 1 91 PRO 91 173 172 PRO PRO A . n A 1 92 GLY 92 174 173 GLY GLY A . n A 1 93 VAL 93 175 174 VAL VAL A . n A 1 94 ILE 94 176 175 ILE ILE A . n A 1 95 ASP 95 177 176 ASP ASP A . n A 1 96 ASN 96 178 177 ASN ASN A . n A 1 97 ASP 97 179 178 ASP ASP A . n A 1 98 TYR 98 180 179 TYR TYR A . n A 1 99 THR 99 181 180 THR THR A . n A 1 100 GLY 100 182 181 GLY GLY A . n A 1 101 GLU 101 183 182 GLU GLU A . n A 1 102 ILE 102 184 183 ILE ILE A . n A 1 103 LYS 103 185 184 LYS LYS A . n A 1 104 ILE 104 186 185 ILE ILE A . n A 1 105 MET 105 187 186 MET MET A . n A 1 106 ALA 106 188 187 ALA ALA A . n A 1 107 LYS 107 189 188 LYS LYS A . n A 1 108 ALA 108 190 189 ALA ALA A . n A 1 109 VAL 109 191 190 VAL VAL A . n A 1 110 ASN 110 192 191 ASN ASN A . n A 1 111 ASN 111 193 192 ASN ASN A . n A 1 112 ILE 112 194 193 ILE ILE A . n A 1 113 VAL 113 195 194 VAL VAL A . n A 1 114 THR 114 196 195 THR THR A . n A 1 115 VAL 115 197 196 VAL VAL A . n A 1 116 SER 116 198 197 SER SER A . n A 1 117 GLN 117 199 198 GLN GLN A . n A 1 118 GLY 118 200 199 GLY GLY A . n A 1 119 ASN 119 201 200 ASN ASN A . n A 1 120 ARG 120 202 201 ARG ARG A . n A 1 121 ILE 121 203 202 ILE ILE A . n A 1 122 ALA 122 204 203 ALA ALA A . n A 1 123 GLN 123 205 204 GLN GLN A . n A 1 124 LEU 124 206 205 LEU LEU A . n A 1 125 ILE 125 207 206 ILE ILE A . n A 1 126 LEU 126 208 207 LEU LEU A . n A 1 127 LEU 127 209 208 LEU LEU A . n A 1 128 PRO 128 210 209 PRO PRO A . n A 1 129 LEU 129 211 210 LEU LEU A . n A 1 130 ILE 130 212 211 ILE ILE A . n A 1 131 GLU 131 213 212 GLU GLU A . n A 1 132 THR 132 214 213 THR THR A . n A 1 133 ASP 133 215 214 ASP ASP A . n A 1 134 ASN 134 216 215 ASN ASN A . n A 1 135 LYS 135 217 216 LYS LYS A . n A 1 136 VAL 136 218 217 VAL VAL A . n A 1 137 GLN 137 219 218 GLN GLN A . n A 1 138 GLN 138 220 ? ? ? A . n A 1 139 PRO 139 221 ? ? ? A . n A 1 140 TYR 140 222 ? ? ? A . n A 1 141 ARG 141 223 ? ? ? A . n A 1 142 GLY 142 224 ? ? ? A . n A 1 143 GLN 143 225 ? ? ? A . n A 1 144 GLY 144 226 ? ? ? A . n A 1 145 SER 145 227 ? ? ? A . n A 1 146 PHE 146 228 ? ? ? A . n A 1 147 GLY 147 229 ? ? ? A . n A 1 148 SER 148 230 ? ? ? A . n A 1 149 SER 149 231 ? ? ? A . n A 1 150 ASP 150 232 ? ? ? A . n A 1 151 ILE 151 233 ? ? ? A . n A 1 152 TYR 152 234 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 999 999 MG MG A . C 3 DUP 1 777 777 DUP UNP A . D 4 TRS 1 1001 1 TRS TRS A . E 5 HOH 1 1002 1 HOH HOH A . E 5 HOH 2 1003 2 HOH HOH A . E 5 HOH 3 1004 3 HOH HOH A . E 5 HOH 4 1005 4 HOH HOH A . E 5 HOH 5 1006 5 HOH HOH A . E 5 HOH 6 1007 6 HOH HOH A . E 5 HOH 7 1008 8 HOH HOH A . E 5 HOH 8 1009 9 HOH HOH A . E 5 HOH 9 1010 10 HOH HOH A . E 5 HOH 10 1011 11 HOH HOH A . E 5 HOH 11 1012 12 HOH HOH A . E 5 HOH 12 1013 13 HOH HOH A . E 5 HOH 13 1014 15 HOH HOH A . E 5 HOH 14 1015 16 HOH HOH A . E 5 HOH 15 1016 17 HOH HOH A . E 5 HOH 16 1017 18 HOH HOH A . E 5 HOH 17 1018 19 HOH HOH A . E 5 HOH 18 1019 20 HOH HOH A . E 5 HOH 19 1020 21 HOH HOH A . E 5 HOH 20 1021 22 HOH HOH A . E 5 HOH 21 1022 23 HOH HOH A . E 5 HOH 22 1023 24 HOH HOH A . E 5 HOH 23 1024 25 HOH HOH A . E 5 HOH 24 1025 26 HOH HOH A . E 5 HOH 25 1026 27 HOH HOH A . E 5 HOH 26 1027 28 HOH HOH A . E 5 HOH 27 1028 29 HOH HOH A . E 5 HOH 28 1029 30 HOH HOH A . E 5 HOH 29 1030 31 HOH HOH A . E 5 HOH 30 1031 32 HOH HOH A . E 5 HOH 31 1032 33 HOH HOH A . E 5 HOH 32 1033 34 HOH HOH A . E 5 HOH 33 1034 35 HOH HOH A . E 5 HOH 34 1035 36 HOH HOH A . E 5 HOH 35 1036 37 HOH HOH A . E 5 HOH 36 1037 38 HOH HOH A . E 5 HOH 37 1038 39 HOH HOH A . E 5 HOH 38 1039 40 HOH HOH A . E 5 HOH 39 1040 42 HOH HOH A . E 5 HOH 40 1041 43 HOH HOH A . E 5 HOH 41 1042 44 HOH HOH A . E 5 HOH 42 1043 45 HOH HOH A . E 5 HOH 43 1044 46 HOH HOH A . E 5 HOH 44 1045 47 HOH HOH A . E 5 HOH 45 1046 48 HOH HOH A . E 5 HOH 46 1047 49 HOH HOH A . E 5 HOH 47 1048 50 HOH HOH A . E 5 HOH 48 1049 51 HOH HOH A . E 5 HOH 49 1050 52 HOH HOH A . E 5 HOH 50 1051 53 HOH HOH A . E 5 HOH 51 1052 54 HOH HOH A . E 5 HOH 52 1053 55 HOH HOH A . E 5 HOH 53 1054 56 HOH HOH A . E 5 HOH 54 1055 57 HOH HOH A . E 5 HOH 55 1056 58 HOH HOH A . E 5 HOH 56 1057 59 HOH HOH A . E 5 HOH 57 1058 60 HOH HOH A . E 5 HOH 58 1059 61 HOH HOH A . E 5 HOH 59 1060 62 HOH HOH A . E 5 HOH 60 1061 63 HOH HOH A . E 5 HOH 61 1062 64 HOH HOH A . E 5 HOH 62 1063 65 HOH HOH A . E 5 HOH 63 1064 66 HOH HOH A . E 5 HOH 64 1065 67 HOH HOH A . E 5 HOH 65 1066 68 HOH HOH A . E 5 HOH 66 1067 69 HOH HOH A . E 5 HOH 67 1068 70 HOH HOH A . E 5 HOH 68 1069 71 HOH HOH A . E 5 HOH 69 1070 72 HOH HOH A . E 5 HOH 70 1071 73 HOH HOH A . E 5 HOH 71 1072 74 HOH HOH A . E 5 HOH 72 1073 75 HOH HOH A . E 5 HOH 73 1074 76 HOH HOH A . E 5 HOH 74 1075 77 HOH HOH A . E 5 HOH 75 1076 78 HOH HOH A . E 5 HOH 76 1077 79 HOH HOH A . E 5 HOH 77 1078 80 HOH HOH A . E 5 HOH 78 1079 81 HOH HOH A . E 5 HOH 79 1080 82 HOH HOH A . E 5 HOH 80 1081 83 HOH HOH A . E 5 HOH 81 1082 84 HOH HOH A . E 5 HOH 82 1083 85 HOH HOH A . E 5 HOH 83 1084 86 HOH HOH A . E 5 HOH 84 1085 87 HOH HOH A . E 5 HOH 85 1086 88 HOH HOH A . E 5 HOH 86 1087 89 HOH HOH A . E 5 HOH 87 1088 90 HOH HOH A . E 5 HOH 88 1089 91 HOH HOH A . E 5 HOH 89 1090 92 HOH HOH A . E 5 HOH 90 1091 93 HOH HOH A . E 5 HOH 91 1092 94 HOH HOH A . E 5 HOH 92 1093 95 HOH HOH A . E 5 HOH 93 1094 96 HOH HOH A . E 5 HOH 94 1095 97 HOH HOH A . E 5 HOH 95 1096 98 HOH HOH A . E 5 HOH 96 1097 99 HOH HOH A . E 5 HOH 97 1098 100 HOH HOH A . E 5 HOH 98 1099 101 HOH HOH A . E 5 HOH 99 1100 102 HOH HOH A . E 5 HOH 100 1101 103 HOH HOH A . E 5 HOH 101 1102 104 HOH HOH A . E 5 HOH 102 1103 105 HOH HOH A . E 5 HOH 103 1104 106 HOH HOH A . E 5 HOH 104 1105 107 HOH HOH A . E 5 HOH 105 1106 108 HOH HOH A . E 5 HOH 106 1107 109 HOH HOH A . E 5 HOH 107 1108 111 HOH HOH A . E 5 HOH 108 1109 112 HOH HOH A . E 5 HOH 109 1110 113 HOH HOH A . E 5 HOH 110 1111 114 HOH HOH A . E 5 HOH 111 1112 115 HOH HOH A . E 5 HOH 112 1113 116 HOH HOH A . E 5 HOH 113 1114 118 HOH HOH A . E 5 HOH 114 1115 120 HOH HOH A . E 5 HOH 115 1116 121 HOH HOH A . E 5 HOH 116 1117 122 HOH HOH A . E 5 HOH 117 1118 125 HOH HOH A . E 5 HOH 118 1119 126 HOH HOH A . E 5 HOH 119 1120 127 HOH HOH A . E 5 HOH 120 1121 128 HOH HOH A . E 5 HOH 121 1122 129 HOH HOH A . E 5 HOH 122 1123 130 HOH HOH A . E 5 HOH 123 1124 131 HOH HOH A . E 5 HOH 124 1125 132 HOH HOH A . E 5 HOH 125 1126 133 HOH HOH A . E 5 HOH 126 1127 134 HOH HOH A . E 5 HOH 127 1128 135 HOH HOH A . E 5 HOH 128 1129 136 HOH HOH A . E 5 HOH 129 1130 137 HOH HOH A . E 5 HOH 130 1131 138 HOH HOH A . E 5 HOH 131 1132 139 HOH HOH A . E 5 HOH 132 1133 140 HOH HOH A . E 5 HOH 133 1134 141 HOH HOH A . E 5 HOH 134 1135 142 HOH HOH A . E 5 HOH 135 1136 143 HOH HOH A . E 5 HOH 136 1137 144 HOH HOH A . E 5 HOH 137 1138 145 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10160 ? 1 MORE -84 ? 1 'SSA (A^2)' 13550 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5000000000 -0.8660254038 0.0000000000 61.0710000000 0.8660254038 -0.5000000000 0.0000000000 105.7780748690 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5000000000 0.8660254038 0.0000000000 -61.0710000000 -0.8660254038 -0.5000000000 0.0000000000 105.7780748690 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A TRS 1001 ? D TRS . 2 1 A TRS 1001 ? D TRS . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2G ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1B ? C DUP . ? A DUP 777 ? 1_555 92.2 ? 2 O2G ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1A ? C DUP . ? A DUP 777 ? 1_555 96.0 ? 3 O1B ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O1A ? C DUP . ? A DUP 777 ? 1_555 88.7 ? 4 O2G ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1127 ? 1_555 89.5 ? 5 O1B ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1127 ? 1_555 87.4 ? 6 O1A ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1127 ? 1_555 173.4 ? 7 O2G ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1128 ? 1_555 173.2 ? 8 O1B ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1128 ? 1_555 93.7 ? 9 O1A ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1128 ? 1_555 87.6 ? 10 O ? E HOH . ? A HOH 1127 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1128 ? 1_555 87.3 ? 11 O2G ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1130 ? 1_555 87.3 ? 12 O1B ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1130 ? 1_555 178.2 ? 13 O1A ? C DUP . ? A DUP 777 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1130 ? 1_555 89.7 ? 14 O ? E HOH . ? A HOH 1127 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1130 ? 1_555 94.3 ? 15 O ? E HOH . ? A HOH 1128 ? 1_555 MG ? B MG . ? A MG 999 ? 1_555 O ? E HOH . ? A HOH 1130 ? 1_555 87.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-21 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-20 5 'Structure model' 1 4 2017-10-11 6 'Structure model' 1 5 2021-11-10 7 'Structure model' 1 6 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Non-polymer description' 7 5 'Structure model' 'Refinement description' 8 6 'Structure model' 'Data collection' 9 6 'Structure model' 'Database references' 10 6 'Structure model' 'Derived calculations' 11 7 'Structure model' 'Data collection' 12 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' software 2 6 'Structure model' database_2 3 6 'Structure model' diffrn_source 4 6 'Structure model' pdbx_struct_conn_angle 5 6 'Structure model' struct_conn 6 6 'Structure model' struct_ref_seq_dif 7 6 'Structure model' struct_site 8 7 'Structure model' chem_comp_atom 9 7 'Structure model' chem_comp_bond 10 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_software.classification' 2 5 'Structure model' '_software.name' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 6 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 15 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 16 6 'Structure model' '_pdbx_struct_conn_angle.value' 17 6 'Structure model' '_struct_conn.pdbx_dist_value' 18 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 19 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 20 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 21 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 22 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 23 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 6 'Structure model' '_struct_ref_seq_dif.details' 29 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 2.4987 _pdbx_refine_tls.origin_y 59.1533 _pdbx_refine_tls.origin_z 30.6610 _pdbx_refine_tls.T[1][1] -0.0165 _pdbx_refine_tls.T[2][2] -0.0444 _pdbx_refine_tls.T[3][3] -0.0041 _pdbx_refine_tls.T[1][2] 0.0045 _pdbx_refine_tls.T[1][3] -0.0033 _pdbx_refine_tls.T[2][3] 0.0081 _pdbx_refine_tls.L[1][1] 0.4966 _pdbx_refine_tls.L[2][2] 0.6739 _pdbx_refine_tls.L[3][3] 1.0476 _pdbx_refine_tls.L[1][2] -0.0433 _pdbx_refine_tls.L[1][3] -0.0637 _pdbx_refine_tls.L[2][3] 0.1368 _pdbx_refine_tls.S[1][1] 0.0067 _pdbx_refine_tls.S[1][2] -0.0240 _pdbx_refine_tls.S[1][3] -0.0736 _pdbx_refine_tls.S[2][1] -0.0111 _pdbx_refine_tls.S[2][2] 0.0310 _pdbx_refine_tls.S[2][3] -0.0199 _pdbx_refine_tls.S[3][1] 0.0919 _pdbx_refine_tls.S[3][2] 0.0691 _pdbx_refine_tls.S[3][3] -0.0377 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 107 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 25 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 219 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 137 _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0005 ? 1 MAR345 'data collection' . ? 2 XDS 'data scaling' . ? 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 127 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 1115 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.76 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 167 ? CD ? A LYS 85 CD 2 1 Y 1 A LYS 167 ? CE ? A LYS 85 CE 3 1 Y 1 A LYS 167 ? NZ ? A LYS 85 NZ 4 1 Y 1 A VAL 197 ? CB ? A VAL 115 CB 5 1 Y 1 A VAL 197 ? CG1 ? A VAL 115 CG1 6 1 Y 1 A VAL 197 ? CG2 ? A VAL 115 CG2 7 1 Y 1 A ILE 203 ? CD1 ? A ILE 121 CD1 8 1 Y 1 A LYS 217 ? CE ? A LYS 135 CE 9 1 Y 1 A LYS 217 ? NZ ? A LYS 135 NZ 10 1 Y 1 A GLN 219 ? CD ? A GLN 137 CD 11 1 Y 1 A GLN 219 ? OE1 ? A GLN 137 OE1 12 1 Y 1 A GLN 219 ? NE2 ? A GLN 137 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LYS 83 ? A LYS 1 2 1 Y 1 A ARG 84 ? A ARG 2 3 1 Y 1 A VAL 85 ? A VAL 3 4 1 Y 1 A GLU 86 ? A GLU 4 5 1 Y 1 A GLY 87 ? A GLY 5 6 1 Y 1 A PRO 88 ? A PRO 6 7 1 Y 1 A ALA 89 ? A ALA 7 8 1 Y 1 A PRO 90 ? A PRO 8 9 1 Y 1 A GLY 91 ? A GLY 9 10 1 Y 1 A PRO 92 ? A PRO 10 11 1 Y 1 A GLU 93 ? A GLU 11 12 1 Y 1 A THR 94 ? A THR 12 13 1 Y 1 A SER 95 ? A SER 13 14 1 Y 1 A LEU 96 ? A LEU 14 15 1 Y 1 A TRP 97 ? A TRP 15 16 1 Y 1 A GLY 98 ? A GLY 16 17 1 Y 1 A SER 99 ? A SER 17 18 1 Y 1 A GLN 100 ? A GLN 18 19 1 Y 1 A LEU 101 ? A LEU 19 20 1 Y 1 A CYS 102 ? A CYS 20 21 1 Y 1 A SER 103 ? A SER 21 22 1 Y 1 A SER 104 ? A SER 22 23 1 Y 1 A GLN 105 ? A GLN 23 24 1 Y 1 A GLN 106 ? A GLN 24 25 1 Y 1 A GLN 220 ? A GLN 138 26 1 Y 1 A PRO 221 ? A PRO 139 27 1 Y 1 A TYR 222 ? A TYR 140 28 1 Y 1 A ARG 223 ? A ARG 141 29 1 Y 1 A GLY 224 ? A GLY 142 30 1 Y 1 A GLN 225 ? A GLN 143 31 1 Y 1 A GLY 226 ? A GLY 144 32 1 Y 1 A SER 227 ? A SER 145 33 1 Y 1 A PHE 228 ? A PHE 146 34 1 Y 1 A GLY 229 ? A GLY 147 35 1 Y 1 A SER 230 ? A SER 148 36 1 Y 1 A SER 231 ? A SER 149 37 1 Y 1 A ASP 232 ? A ASP 150 38 1 Y 1 A ILE 233 ? A ILE 151 39 1 Y 1 A TYR 234 ? A TYR 152 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DUP O4 O N N 88 DUP C4 C Y N 89 DUP C5 C Y N 90 DUP C6 C Y N 91 DUP N3 N Y N 92 DUP C2 C Y N 93 DUP O2 O N N 94 DUP N1 N Y N 95 DUP "C1'" C N R 96 DUP "C2'" C N N 97 DUP "C3'" C N S 98 DUP "O3'" O N N 99 DUP "O4'" O N N 100 DUP "C4'" C N R 101 DUP "C5'" C N N 102 DUP "O5'" O N N 103 DUP PA P N S 104 DUP O1A O N N 105 DUP O2A O N N 106 DUP N3A N N N 107 DUP PB P N R 108 DUP O1B O N N 109 DUP O2B O N N 110 DUP O3B O N N 111 DUP PG P N N 112 DUP O2G O N N 113 DUP O1G O N N 114 DUP O3G O N N 115 DUP H5 H N N 116 DUP H6 H N N 117 DUP HN3 H N N 118 DUP "H1'" H N N 119 DUP "H2'1" H N N 120 DUP "H2'2" H N N 121 DUP H1 H N N 122 DUP "H3'" H N N 123 DUP "H4'" H N N 124 DUP "H5'1" H N N 125 DUP "H5'2" H N N 126 DUP H2A H N N 127 DUP H3A H N N 128 DUP H2B H N N 129 DUP H1G H N N 130 DUP H3G H N N 131 GLN N N N N 132 GLN CA C N S 133 GLN C C N N 134 GLN O O N N 135 GLN CB C N N 136 GLN CG C N N 137 GLN CD C N N 138 GLN OE1 O N N 139 GLN NE2 N N N 140 GLN OXT O N N 141 GLN H H N N 142 GLN H2 H N N 143 GLN HA H N N 144 GLN HB2 H N N 145 GLN HB3 H N N 146 GLN HG2 H N N 147 GLN HG3 H N N 148 GLN HE21 H N N 149 GLN HE22 H N N 150 GLN HXT H N N 151 GLU N N N N 152 GLU CA C N S 153 GLU C C N N 154 GLU O O N N 155 GLU CB C N N 156 GLU CG C N N 157 GLU CD C N N 158 GLU OE1 O N N 159 GLU OE2 O N N 160 GLU OXT O N N 161 GLU H H N N 162 GLU H2 H N N 163 GLU HA H N N 164 GLU HB2 H N N 165 GLU HB3 H N N 166 GLU HG2 H N N 167 GLU HG3 H N N 168 GLU HE2 H N N 169 GLU HXT H N N 170 GLY N N N N 171 GLY CA C N N 172 GLY C C N N 173 GLY O O N N 174 GLY OXT O N N 175 GLY H H N N 176 GLY H2 H N N 177 GLY HA2 H N N 178 GLY HA3 H N N 179 GLY HXT H N N 180 HIS N N N N 181 HIS CA C N S 182 HIS C C N N 183 HIS O O N N 184 HIS CB C N N 185 HIS CG C Y N 186 HIS ND1 N Y N 187 HIS CD2 C Y N 188 HIS CE1 C Y N 189 HIS NE2 N Y N 190 HIS OXT O N N 191 HIS H H N N 192 HIS H2 H N N 193 HIS HA H N N 194 HIS HB2 H N N 195 HIS HB3 H N N 196 HIS HD1 H N N 197 HIS HD2 H N N 198 HIS HE1 H N N 199 HIS HE2 H N N 200 HIS HXT H N N 201 HOH O O N N 202 HOH H1 H N N 203 HOH H2 H N N 204 ILE N N N N 205 ILE CA C N S 206 ILE C C N N 207 ILE O O N N 208 ILE CB C N S 209 ILE CG1 C N N 210 ILE CG2 C N N 211 ILE CD1 C N N 212 ILE OXT O N N 213 ILE H H N N 214 ILE H2 H N N 215 ILE HA H N N 216 ILE HB H N N 217 ILE HG12 H N N 218 ILE HG13 H N N 219 ILE HG21 H N N 220 ILE HG22 H N N 221 ILE HG23 H N N 222 ILE HD11 H N N 223 ILE HD12 H N N 224 ILE HD13 H N N 225 ILE HXT H N N 226 LEU N N N N 227 LEU CA C N S 228 LEU C C N N 229 LEU O O N N 230 LEU CB C N N 231 LEU CG C N N 232 LEU CD1 C N N 233 LEU CD2 C N N 234 LEU OXT O N N 235 LEU H H N N 236 LEU H2 H N N 237 LEU HA H N N 238 LEU HB2 H N N 239 LEU HB3 H N N 240 LEU HG H N N 241 LEU HD11 H N N 242 LEU HD12 H N N 243 LEU HD13 H N N 244 LEU HD21 H N N 245 LEU HD22 H N N 246 LEU HD23 H N N 247 LEU HXT H N N 248 LYS N N N N 249 LYS CA C N S 250 LYS C C N N 251 LYS O O N N 252 LYS CB C N N 253 LYS CG C N N 254 LYS CD C N N 255 LYS CE C N N 256 LYS NZ N N N 257 LYS OXT O N N 258 LYS H H N N 259 LYS H2 H N N 260 LYS HA H N N 261 LYS HB2 H N N 262 LYS HB3 H N N 263 LYS HG2 H N N 264 LYS HG3 H N N 265 LYS HD2 H N N 266 LYS HD3 H N N 267 LYS HE2 H N N 268 LYS HE3 H N N 269 LYS HZ1 H N N 270 LYS HZ2 H N N 271 LYS HZ3 H N N 272 LYS HXT H N N 273 MET N N N N 274 MET CA C N S 275 MET C C N N 276 MET O O N N 277 MET CB C N N 278 MET CG C N N 279 MET SD S N N 280 MET CE C N N 281 MET OXT O N N 282 MET H H N N 283 MET H2 H N N 284 MET HA H N N 285 MET HB2 H N N 286 MET HB3 H N N 287 MET HG2 H N N 288 MET HG3 H N N 289 MET HE1 H N N 290 MET HE2 H N N 291 MET HE3 H N N 292 MET HXT H N N 293 MG MG MG N N 294 PHE N N N N 295 PHE CA C N S 296 PHE C C N N 297 PHE O O N N 298 PHE CB C N N 299 PHE CG C Y N 300 PHE CD1 C Y N 301 PHE CD2 C Y N 302 PHE CE1 C Y N 303 PHE CE2 C Y N 304 PHE CZ C Y N 305 PHE OXT O N N 306 PHE H H N N 307 PHE H2 H N N 308 PHE HA H N N 309 PHE HB2 H N N 310 PHE HB3 H N N 311 PHE HD1 H N N 312 PHE HD2 H N N 313 PHE HE1 H N N 314 PHE HE2 H N N 315 PHE HZ H N N 316 PHE HXT H N N 317 PRO N N N N 318 PRO CA C N S 319 PRO C C N N 320 PRO O O N N 321 PRO CB C N N 322 PRO CG C N N 323 PRO CD C N N 324 PRO OXT O N N 325 PRO H H N N 326 PRO HA H N N 327 PRO HB2 H N N 328 PRO HB3 H N N 329 PRO HG2 H N N 330 PRO HG3 H N N 331 PRO HD2 H N N 332 PRO HD3 H N N 333 PRO HXT H N N 334 SER N N N N 335 SER CA C N S 336 SER C C N N 337 SER O O N N 338 SER CB C N N 339 SER OG O N N 340 SER OXT O N N 341 SER H H N N 342 SER H2 H N N 343 SER HA H N N 344 SER HB2 H N N 345 SER HB3 H N N 346 SER HG H N N 347 SER HXT H N N 348 THR N N N N 349 THR CA C N S 350 THR C C N N 351 THR O O N N 352 THR CB C N R 353 THR OG1 O N N 354 THR CG2 C N N 355 THR OXT O N N 356 THR H H N N 357 THR H2 H N N 358 THR HA H N N 359 THR HB H N N 360 THR HG1 H N N 361 THR HG21 H N N 362 THR HG22 H N N 363 THR HG23 H N N 364 THR HXT H N N 365 TRP N N N N 366 TRP CA C N S 367 TRP C C N N 368 TRP O O N N 369 TRP CB C N N 370 TRP CG C Y N 371 TRP CD1 C Y N 372 TRP CD2 C Y N 373 TRP NE1 N Y N 374 TRP CE2 C Y N 375 TRP CE3 C Y N 376 TRP CZ2 C Y N 377 TRP CZ3 C Y N 378 TRP CH2 C Y N 379 TRP OXT O N N 380 TRP H H N N 381 TRP H2 H N N 382 TRP HA H N N 383 TRP HB2 H N N 384 TRP HB3 H N N 385 TRP HD1 H N N 386 TRP HE1 H N N 387 TRP HE3 H N N 388 TRP HZ2 H N N 389 TRP HZ3 H N N 390 TRP HH2 H N N 391 TRP HXT H N N 392 TRS C C N N 393 TRS C1 C N N 394 TRS C2 C N N 395 TRS C3 C N N 396 TRS N N N N 397 TRS O1 O N N 398 TRS O2 O N N 399 TRS O3 O N N 400 TRS H11 H N N 401 TRS H12 H N N 402 TRS H21 H N N 403 TRS H22 H N N 404 TRS H31 H N N 405 TRS H32 H N N 406 TRS HN1 H N N 407 TRS HN2 H N N 408 TRS HN3 H N N 409 TRS HO1 H N N 410 TRS HO2 H N N 411 TRS HO3 H N N 412 TYR N N N N 413 TYR CA C N S 414 TYR C C N N 415 TYR O O N N 416 TYR CB C N N 417 TYR CG C Y N 418 TYR CD1 C Y N 419 TYR CD2 C Y N 420 TYR CE1 C Y N 421 TYR CE2 C Y N 422 TYR CZ C Y N 423 TYR OH O N N 424 TYR OXT O N N 425 TYR H H N N 426 TYR H2 H N N 427 TYR HA H N N 428 TYR HB2 H N N 429 TYR HB3 H N N 430 TYR HD1 H N N 431 TYR HD2 H N N 432 TYR HE1 H N N 433 TYR HE2 H N N 434 TYR HH H N N 435 TYR HXT H N N 436 VAL N N N N 437 VAL CA C N S 438 VAL C C N N 439 VAL O O N N 440 VAL CB C N N 441 VAL CG1 C N N 442 VAL CG2 C N N 443 VAL OXT O N N 444 VAL H H N N 445 VAL H2 H N N 446 VAL HA H N N 447 VAL HB H N N 448 VAL HG11 H N N 449 VAL HG12 H N N 450 VAL HG13 H N N 451 VAL HG21 H N N 452 VAL HG22 H N N 453 VAL HG23 H N N 454 VAL HXT H N N 455 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DUP O4 C4 doub N N 83 DUP C4 C5 sing Y N 84 DUP C4 N3 sing Y N 85 DUP C5 C6 doub Y N 86 DUP C5 H5 sing N N 87 DUP C6 N1 sing Y N 88 DUP C6 H6 sing N N 89 DUP N3 C2 sing Y N 90 DUP N3 HN3 sing N N 91 DUP C2 O2 doub N N 92 DUP C2 N1 sing Y N 93 DUP N1 "C1'" sing N N 94 DUP "C1'" "C2'" sing N N 95 DUP "C1'" "O4'" sing N N 96 DUP "C1'" "H1'" sing N N 97 DUP "C2'" "C3'" sing N N 98 DUP "C2'" "H2'1" sing N N 99 DUP "C2'" "H2'2" sing N N 100 DUP "C3'" "O3'" sing N N 101 DUP "C3'" "C4'" sing N N 102 DUP "C3'" H1 sing N N 103 DUP "O3'" "H3'" sing N N 104 DUP "O4'" "C4'" sing N N 105 DUP "C4'" "C5'" sing N N 106 DUP "C4'" "H4'" sing N N 107 DUP "C5'" "O5'" sing N N 108 DUP "C5'" "H5'1" sing N N 109 DUP "C5'" "H5'2" sing N N 110 DUP "O5'" PA sing N N 111 DUP PA O1A doub N N 112 DUP PA O2A sing N N 113 DUP PA N3A sing N N 114 DUP O2A H2A sing N N 115 DUP N3A PB sing N N 116 DUP N3A H3A sing N N 117 DUP PB O1B doub N N 118 DUP PB O2B sing N N 119 DUP PB O3B sing N N 120 DUP O2B H2B sing N N 121 DUP O3B PG sing N N 122 DUP PG O2G doub N N 123 DUP PG O1G sing N N 124 DUP PG O3G sing N N 125 DUP O1G H1G sing N N 126 DUP O3G H3G sing N N 127 GLN N CA sing N N 128 GLN N H sing N N 129 GLN N H2 sing N N 130 GLN CA C sing N N 131 GLN CA CB sing N N 132 GLN CA HA sing N N 133 GLN C O doub N N 134 GLN C OXT sing N N 135 GLN CB CG sing N N 136 GLN CB HB2 sing N N 137 GLN CB HB3 sing N N 138 GLN CG CD sing N N 139 GLN CG HG2 sing N N 140 GLN CG HG3 sing N N 141 GLN CD OE1 doub N N 142 GLN CD NE2 sing N N 143 GLN NE2 HE21 sing N N 144 GLN NE2 HE22 sing N N 145 GLN OXT HXT sing N N 146 GLU N CA sing N N 147 GLU N H sing N N 148 GLU N H2 sing N N 149 GLU CA C sing N N 150 GLU CA CB sing N N 151 GLU CA HA sing N N 152 GLU C O doub N N 153 GLU C OXT sing N N 154 GLU CB CG sing N N 155 GLU CB HB2 sing N N 156 GLU CB HB3 sing N N 157 GLU CG CD sing N N 158 GLU CG HG2 sing N N 159 GLU CG HG3 sing N N 160 GLU CD OE1 doub N N 161 GLU CD OE2 sing N N 162 GLU OE2 HE2 sing N N 163 GLU OXT HXT sing N N 164 GLY N CA sing N N 165 GLY N H sing N N 166 GLY N H2 sing N N 167 GLY CA C sing N N 168 GLY CA HA2 sing N N 169 GLY CA HA3 sing N N 170 GLY C O doub N N 171 GLY C OXT sing N N 172 GLY OXT HXT sing N N 173 HIS N CA sing N N 174 HIS N H sing N N 175 HIS N H2 sing N N 176 HIS CA C sing N N 177 HIS CA CB sing N N 178 HIS CA HA sing N N 179 HIS C O doub N N 180 HIS C OXT sing N N 181 HIS CB CG sing N N 182 HIS CB HB2 sing N N 183 HIS CB HB3 sing N N 184 HIS CG ND1 sing Y N 185 HIS CG CD2 doub Y N 186 HIS ND1 CE1 doub Y N 187 HIS ND1 HD1 sing N N 188 HIS CD2 NE2 sing Y N 189 HIS CD2 HD2 sing N N 190 HIS CE1 NE2 sing Y N 191 HIS CE1 HE1 sing N N 192 HIS NE2 HE2 sing N N 193 HIS OXT HXT sing N N 194 HOH O H1 sing N N 195 HOH O H2 sing N N 196 ILE N CA sing N N 197 ILE N H sing N N 198 ILE N H2 sing N N 199 ILE CA C sing N N 200 ILE CA CB sing N N 201 ILE CA HA sing N N 202 ILE C O doub N N 203 ILE C OXT sing N N 204 ILE CB CG1 sing N N 205 ILE CB CG2 sing N N 206 ILE CB HB sing N N 207 ILE CG1 CD1 sing N N 208 ILE CG1 HG12 sing N N 209 ILE CG1 HG13 sing N N 210 ILE CG2 HG21 sing N N 211 ILE CG2 HG22 sing N N 212 ILE CG2 HG23 sing N N 213 ILE CD1 HD11 sing N N 214 ILE CD1 HD12 sing N N 215 ILE CD1 HD13 sing N N 216 ILE OXT HXT sing N N 217 LEU N CA sing N N 218 LEU N H sing N N 219 LEU N H2 sing N N 220 LEU CA C sing N N 221 LEU CA CB sing N N 222 LEU CA HA sing N N 223 LEU C O doub N N 224 LEU C OXT sing N N 225 LEU CB CG sing N N 226 LEU CB HB2 sing N N 227 LEU CB HB3 sing N N 228 LEU CG CD1 sing N N 229 LEU CG CD2 sing N N 230 LEU CG HG sing N N 231 LEU CD1 HD11 sing N N 232 LEU CD1 HD12 sing N N 233 LEU CD1 HD13 sing N N 234 LEU CD2 HD21 sing N N 235 LEU CD2 HD22 sing N N 236 LEU CD2 HD23 sing N N 237 LEU OXT HXT sing N N 238 LYS N CA sing N N 239 LYS N H sing N N 240 LYS N H2 sing N N 241 LYS CA C sing N N 242 LYS CA CB sing N N 243 LYS CA HA sing N N 244 LYS C O doub N N 245 LYS C OXT sing N N 246 LYS CB CG sing N N 247 LYS CB HB2 sing N N 248 LYS CB HB3 sing N N 249 LYS CG CD sing N N 250 LYS CG HG2 sing N N 251 LYS CG HG3 sing N N 252 LYS CD CE sing N N 253 LYS CD HD2 sing N N 254 LYS CD HD3 sing N N 255 LYS CE NZ sing N N 256 LYS CE HE2 sing N N 257 LYS CE HE3 sing N N 258 LYS NZ HZ1 sing N N 259 LYS NZ HZ2 sing N N 260 LYS NZ HZ3 sing N N 261 LYS OXT HXT sing N N 262 MET N CA sing N N 263 MET N H sing N N 264 MET N H2 sing N N 265 MET CA C sing N N 266 MET CA CB sing N N 267 MET CA HA sing N N 268 MET C O doub N N 269 MET C OXT sing N N 270 MET CB CG sing N N 271 MET CB HB2 sing N N 272 MET CB HB3 sing N N 273 MET CG SD sing N N 274 MET CG HG2 sing N N 275 MET CG HG3 sing N N 276 MET SD CE sing N N 277 MET CE HE1 sing N N 278 MET CE HE2 sing N N 279 MET CE HE3 sing N N 280 MET OXT HXT sing N N 281 PHE N CA sing N N 282 PHE N H sing N N 283 PHE N H2 sing N N 284 PHE CA C sing N N 285 PHE CA CB sing N N 286 PHE CA HA sing N N 287 PHE C O doub N N 288 PHE C OXT sing N N 289 PHE CB CG sing N N 290 PHE CB HB2 sing N N 291 PHE CB HB3 sing N N 292 PHE CG CD1 doub Y N 293 PHE CG CD2 sing Y N 294 PHE CD1 CE1 sing Y N 295 PHE CD1 HD1 sing N N 296 PHE CD2 CE2 doub Y N 297 PHE CD2 HD2 sing N N 298 PHE CE1 CZ doub Y N 299 PHE CE1 HE1 sing N N 300 PHE CE2 CZ sing Y N 301 PHE CE2 HE2 sing N N 302 PHE CZ HZ sing N N 303 PHE OXT HXT sing N N 304 PRO N CA sing N N 305 PRO N CD sing N N 306 PRO N H sing N N 307 PRO CA C sing N N 308 PRO CA CB sing N N 309 PRO CA HA sing N N 310 PRO C O doub N N 311 PRO C OXT sing N N 312 PRO CB CG sing N N 313 PRO CB HB2 sing N N 314 PRO CB HB3 sing N N 315 PRO CG CD sing N N 316 PRO CG HG2 sing N N 317 PRO CG HG3 sing N N 318 PRO CD HD2 sing N N 319 PRO CD HD3 sing N N 320 PRO OXT HXT sing N N 321 SER N CA sing N N 322 SER N H sing N N 323 SER N H2 sing N N 324 SER CA C sing N N 325 SER CA CB sing N N 326 SER CA HA sing N N 327 SER C O doub N N 328 SER C OXT sing N N 329 SER CB OG sing N N 330 SER CB HB2 sing N N 331 SER CB HB3 sing N N 332 SER OG HG sing N N 333 SER OXT HXT sing N N 334 THR N CA sing N N 335 THR N H sing N N 336 THR N H2 sing N N 337 THR CA C sing N N 338 THR CA CB sing N N 339 THR CA HA sing N N 340 THR C O doub N N 341 THR C OXT sing N N 342 THR CB OG1 sing N N 343 THR CB CG2 sing N N 344 THR CB HB sing N N 345 THR OG1 HG1 sing N N 346 THR CG2 HG21 sing N N 347 THR CG2 HG22 sing N N 348 THR CG2 HG23 sing N N 349 THR OXT HXT sing N N 350 TRP N CA sing N N 351 TRP N H sing N N 352 TRP N H2 sing N N 353 TRP CA C sing N N 354 TRP CA CB sing N N 355 TRP CA HA sing N N 356 TRP C O doub N N 357 TRP C OXT sing N N 358 TRP CB CG sing N N 359 TRP CB HB2 sing N N 360 TRP CB HB3 sing N N 361 TRP CG CD1 doub Y N 362 TRP CG CD2 sing Y N 363 TRP CD1 NE1 sing Y N 364 TRP CD1 HD1 sing N N 365 TRP CD2 CE2 doub Y N 366 TRP CD2 CE3 sing Y N 367 TRP NE1 CE2 sing Y N 368 TRP NE1 HE1 sing N N 369 TRP CE2 CZ2 sing Y N 370 TRP CE3 CZ3 doub Y N 371 TRP CE3 HE3 sing N N 372 TRP CZ2 CH2 doub Y N 373 TRP CZ2 HZ2 sing N N 374 TRP CZ3 CH2 sing Y N 375 TRP CZ3 HZ3 sing N N 376 TRP CH2 HH2 sing N N 377 TRP OXT HXT sing N N 378 TRS C C1 sing N N 379 TRS C C2 sing N N 380 TRS C C3 sing N N 381 TRS C N sing N N 382 TRS C1 O1 sing N N 383 TRS C1 H11 sing N N 384 TRS C1 H12 sing N N 385 TRS C2 O2 sing N N 386 TRS C2 H21 sing N N 387 TRS C2 H22 sing N N 388 TRS C3 O3 sing N N 389 TRS C3 H31 sing N N 390 TRS C3 H32 sing N N 391 TRS N HN1 sing N N 392 TRS N HN2 sing N N 393 TRS N HN3 sing N N 394 TRS O1 HO1 sing N N 395 TRS O2 HO2 sing N N 396 TRS O3 HO3 sing N N 397 TYR N CA sing N N 398 TYR N H sing N N 399 TYR N H2 sing N N 400 TYR CA C sing N N 401 TYR CA CB sing N N 402 TYR CA HA sing N N 403 TYR C O doub N N 404 TYR C OXT sing N N 405 TYR CB CG sing N N 406 TYR CB HB2 sing N N 407 TYR CB HB3 sing N N 408 TYR CG CD1 doub Y N 409 TYR CG CD2 sing Y N 410 TYR CD1 CE1 sing Y N 411 TYR CD1 HD1 sing N N 412 TYR CD2 CE2 doub Y N 413 TYR CD2 HD2 sing N N 414 TYR CE1 CZ doub Y N 415 TYR CE1 HE1 sing N N 416 TYR CE2 CZ sing Y N 417 TYR CE2 HE2 sing N N 418 TYR CZ OH sing N N 419 TYR OH HH sing N N 420 TYR OXT HXT sing N N 421 VAL N CA sing N N 422 VAL N H sing N N 423 VAL N H2 sing N N 424 VAL CA C sing N N 425 VAL CA CB sing N N 426 VAL CA HA sing N N 427 VAL C O doub N N 428 VAL C OXT sing N N 429 VAL CB CG1 sing N N 430 VAL CB CG2 sing N N 431 VAL CB HB sing N N 432 VAL CG1 HG11 sing N N 433 VAL CG1 HG12 sing N N 434 VAL CG1 HG13 sing N N 435 VAL CG2 HG21 sing N N 436 VAL CG2 HG22 sing N N 437 VAL CG2 HG23 sing N N 438 VAL OXT HXT sing N N 439 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 ;2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE ; DUP 4 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2D4L _pdbx_initial_refinement_model.details ? #