data_2D57 # _entry.id 2D57 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D57 pdb_00002d57 10.2210/pdb2d57/pdb RCSB RCSB025000 ? ? WWPDB D_1000025000 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1FQY . unspecified PDB 1J4N . unspecified PDB 1SOR . unspecified PDB 1YMG . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D57 _pdbx_database_status.recvd_initial_deposition_date 2005-10-29 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hiroaki, Y.' 1 'Tani, K.' 2 'Kamegawa, A.' 3 'Gyobu, N.' 4 'Nishikawa, K.' 5 'Suzuki, H.' 6 'Walz, T.' 7 'Sasaki, S.' 8 'Mitsuoka, K.' 9 'Kimura, K.' 10 'Mizoguchi, A.' 11 'Fujiyoshi, Y.' 12 # _citation.id primary _citation.title 'Implications of the Aquaporin-4 Structure on Array Formation and Cell Adhesion' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 355 _citation.page_first 628 _citation.page_last 639 _citation.year 2005 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16325200 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2005.10.081 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hiroaki, Y.' 1 ? primary 'Tani, K.' 2 ? primary 'Kamegawa, A.' 3 ? primary 'Gyobu, N.' 4 ? primary 'Nishikawa, K.' 5 ? primary 'Suzuki, H.' 6 ? primary 'Walz, T.' 7 ? primary 'Sasaki, S.' 8 ? primary 'Mitsuoka, K.' 9 ? primary 'Kimura, K.' 10 ? primary 'Mizoguchi, A.' 11 ? primary 'Fujiyoshi, Y.' 12 ? # _cell.entry_id 2D57 _cell.length_a 69.000 _cell.length_b 69.000 _cell.length_c 160.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2D57 _symmetry.space_group_name_H-M 'P 4 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description Aquaporin-4 _entity.formula_weight 32189.381 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'residues 23-323' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'AQP-4, WCH4, Mercurial-insensitive water channel, MIWC' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTV AMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRL KEAFSKAAQQTKGSYMEVEDNRSQVETEDLILKPGVVHVIDIDRGDEKKGKDSSGEVLSSV ; _entity_poly.pdbx_seq_one_letter_code_can ;MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTV AMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRL KEAFSKAAQQTKGSYMEVEDNRSQVETEDLILKPGVVHVIDIDRGDEKKGKDSSGEVLSSV ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 ALA n 1 4 PHE n 1 5 LYS n 1 6 GLY n 1 7 VAL n 1 8 TRP n 1 9 THR n 1 10 GLN n 1 11 ALA n 1 12 PHE n 1 13 TRP n 1 14 LYS n 1 15 ALA n 1 16 VAL n 1 17 THR n 1 18 ALA n 1 19 GLU n 1 20 PHE n 1 21 LEU n 1 22 ALA n 1 23 MET n 1 24 LEU n 1 25 ILE n 1 26 PHE n 1 27 VAL n 1 28 LEU n 1 29 LEU n 1 30 SER n 1 31 VAL n 1 32 GLY n 1 33 SER n 1 34 THR n 1 35 ILE n 1 36 ASN n 1 37 TRP n 1 38 GLY n 1 39 GLY n 1 40 SER n 1 41 GLU n 1 42 ASN n 1 43 PRO n 1 44 LEU n 1 45 PRO n 1 46 VAL n 1 47 ASP n 1 48 MET n 1 49 VAL n 1 50 LEU n 1 51 ILE n 1 52 SER n 1 53 LEU n 1 54 CYS n 1 55 PHE n 1 56 GLY n 1 57 LEU n 1 58 SER n 1 59 ILE n 1 60 ALA n 1 61 THR n 1 62 MET n 1 63 VAL n 1 64 GLN n 1 65 CYS n 1 66 PHE n 1 67 GLY n 1 68 HIS n 1 69 ILE n 1 70 SER n 1 71 GLY n 1 72 GLY n 1 73 HIS n 1 74 ILE n 1 75 ASN n 1 76 PRO n 1 77 ALA n 1 78 VAL n 1 79 THR n 1 80 VAL n 1 81 ALA n 1 82 MET n 1 83 VAL n 1 84 CYS n 1 85 THR n 1 86 ARG n 1 87 LYS n 1 88 ILE n 1 89 SER n 1 90 ILE n 1 91 ALA n 1 92 LYS n 1 93 SER n 1 94 VAL n 1 95 PHE n 1 96 TYR n 1 97 ILE n 1 98 THR n 1 99 ALA n 1 100 GLN n 1 101 CYS n 1 102 LEU n 1 103 GLY n 1 104 ALA n 1 105 ILE n 1 106 ILE n 1 107 GLY n 1 108 ALA n 1 109 GLY n 1 110 ILE n 1 111 LEU n 1 112 TYR n 1 113 LEU n 1 114 VAL n 1 115 THR n 1 116 PRO n 1 117 PRO n 1 118 SER n 1 119 VAL n 1 120 VAL n 1 121 GLY n 1 122 GLY n 1 123 LEU n 1 124 GLY n 1 125 VAL n 1 126 THR n 1 127 THR n 1 128 VAL n 1 129 HIS n 1 130 GLY n 1 131 ASN n 1 132 LEU n 1 133 THR n 1 134 ALA n 1 135 GLY n 1 136 HIS n 1 137 GLY n 1 138 LEU n 1 139 LEU n 1 140 VAL n 1 141 GLU n 1 142 LEU n 1 143 ILE n 1 144 ILE n 1 145 THR n 1 146 PHE n 1 147 GLN n 1 148 LEU n 1 149 VAL n 1 150 PHE n 1 151 THR n 1 152 ILE n 1 153 PHE n 1 154 ALA n 1 155 SER n 1 156 CYS n 1 157 ASP n 1 158 SER n 1 159 LYS n 1 160 ARG n 1 161 THR n 1 162 ASP n 1 163 VAL n 1 164 THR n 1 165 GLY n 1 166 SER n 1 167 VAL n 1 168 ALA n 1 169 LEU n 1 170 ALA n 1 171 ILE n 1 172 GLY n 1 173 PHE n 1 174 SER n 1 175 VAL n 1 176 ALA n 1 177 ILE n 1 178 GLY n 1 179 HIS n 1 180 LEU n 1 181 PHE n 1 182 ALA n 1 183 ILE n 1 184 ASN n 1 185 TYR n 1 186 THR n 1 187 GLY n 1 188 ALA n 1 189 SER n 1 190 MET n 1 191 ASN n 1 192 PRO n 1 193 ALA n 1 194 ARG n 1 195 SER n 1 196 PHE n 1 197 GLY n 1 198 PRO n 1 199 ALA n 1 200 VAL n 1 201 ILE n 1 202 MET n 1 203 GLY n 1 204 ASN n 1 205 TRP n 1 206 GLU n 1 207 ASN n 1 208 HIS n 1 209 TRP n 1 210 ILE n 1 211 TYR n 1 212 TRP n 1 213 VAL n 1 214 GLY n 1 215 PRO n 1 216 ILE n 1 217 ILE n 1 218 GLY n 1 219 ALA n 1 220 VAL n 1 221 LEU n 1 222 ALA n 1 223 GLY n 1 224 ALA n 1 225 LEU n 1 226 TYR n 1 227 GLU n 1 228 TYR n 1 229 VAL n 1 230 PHE n 1 231 CYS n 1 232 PRO n 1 233 ASP n 1 234 VAL n 1 235 GLU n 1 236 LEU n 1 237 LYS n 1 238 ARG n 1 239 ARG n 1 240 LEU n 1 241 LYS n 1 242 GLU n 1 243 ALA n 1 244 PHE n 1 245 SER n 1 246 LYS n 1 247 ALA n 1 248 ALA n 1 249 GLN n 1 250 GLN n 1 251 THR n 1 252 LYS n 1 253 GLY n 1 254 SER n 1 255 TYR n 1 256 MET n 1 257 GLU n 1 258 VAL n 1 259 GLU n 1 260 ASP n 1 261 ASN n 1 262 ARG n 1 263 SER n 1 264 GLN n 1 265 VAL n 1 266 GLU n 1 267 THR n 1 268 GLU n 1 269 ASP n 1 270 LEU n 1 271 ILE n 1 272 LEU n 1 273 LYS n 1 274 PRO n 1 275 GLY n 1 276 VAL n 1 277 VAL n 1 278 HIS n 1 279 VAL n 1 280 ILE n 1 281 ASP n 1 282 ILE n 1 283 ASP n 1 284 ARG n 1 285 GLY n 1 286 ASP n 1 287 GLU n 1 288 LYS n 1 289 LYS n 1 290 GLY n 1 291 LYS n 1 292 ASP n 1 293 SER n 1 294 SER n 1 295 GLY n 1 296 GLU n 1 297 VAL n 1 298 LEU n 1 299 SER n 1 300 SER n 1 301 VAL n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Norway rat' _entity_src_gen.gene_src_genus Rattus _entity_src_gen.pdbx_gene_src_gene Aqp4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rattus norvegicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10116 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain SF9 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACLOVIRUS _entity_src_gen.pdbx_host_org_vector pBlueBacHis2b _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code AQP4_RAT _struct_ref.pdbx_db_accession P47863 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTV AMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR TDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRRL KEAFSKAAQQTKGSYMEVEDNRSQVETEDLILKPGVVHVIDIDRGDEKKGKDSSGEVLSSV ; _struct_ref.pdbx_align_begin 23 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D57 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 301 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P47863 _struct_ref_seq.db_align_beg 23 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 323 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 23 _struct_ref_seq.pdbx_auth_seq_align_end 323 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2D57 _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.96 _exptl_crystal.density_percent_sol 58.41 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method dialysys _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '10mM MES(pH 6.0), 100mM NaCl, 50mM MgCl2, 2mM DTT, 1% glycerol, dialysys, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 4.2 _diffrn.ambient_temp_details 'data was collected by electron microscope equipped with a helium stage' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'GATAN ULTRASCAN' _diffrn_detector.pdbx_collection_date 2002-04-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type electron # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.01968 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.01968 # _reflns.entry_id 2D57 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 22.21 _reflns.d_resolution_high 3.20 _reflns.number_obs 5992 _reflns.number_all 6888 _reflns.percent_possible_obs 87.0 _reflns.pdbx_Rmerge_I_obs 0.223 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.20 _reflns_shell.d_res_low 3.40 _reflns_shell.percent_possible_all 85.8 _reflns_shell.Rmerge_I_obs 0.445 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2D57 _refine.ls_number_reflns_obs 5992 _refine.ls_number_reflns_all 6888 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 22.21 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 87.0 _refine.ls_R_factor_obs 0.283 _refine.ls_R_factor_all 0.286 _refine.ls_R_factor_R_work 0.283 _refine.ls_R_factor_R_free 0.338 _refine.ls_R_factor_R_free_error 0.018 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.6 _refine.ls_number_reflns_R_free 337 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 53.7 _refine.aniso_B[1][1] -25.43 _refine.aniso_B[2][2] -25.43 _refine.aniso_B[3][3] 50.86 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.147131 _refine.solvent_model_param_bsol 83.0511 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1J4N' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2D57 _refine_analyze.Luzzati_coordinate_error_obs 0.48 _refine_analyze.Luzzati_sigma_a_obs 0.65 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.63 _refine_analyze.Luzzati_sigma_a_free 0.77 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' # _refine_hist.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1659 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1659 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 22.21 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.011 ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? c_angle_deg 1.6 ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? c_dihedral_angle_d 19.1 ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? c_improper_angle_d 1.10 ? ? ? 'ELECTRON CRYSTALLOGRAPHY' ? c_mcbond_it 10.90 1.50 ? ? 'ELECTRON CRYSTALLOGRAPHY' ? c_mcangle_it 16.90 2.00 ? ? 'ELECTRON CRYSTALLOGRAPHY' ? c_scbond_it 13.55 2.00 ? ? 'ELECTRON CRYSTALLOGRAPHY' ? c_scangle_it 19.19 2.50 ? ? 'ELECTRON CRYSTALLOGRAPHY' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.20 _refine_ls_shell.d_res_low 3.40 _refine_ls_shell.number_reflns_R_work 891 _refine_ls_shell.R_factor_R_work 0.34 _refine_ls_shell.percent_reflns_obs 85.8 _refine_ls_shell.R_factor_R_free 0.387 _refine_ls_shell.R_factor_R_free_error 0.049 _refine_ls_shell.percent_reflns_R_free 6.6 _refine_ls_shell.number_reflns_R_free 63 _refine_ls_shell.number_reflns_obs 891 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' # _pdbx_xplor_file.serial_no 1 _pdbx_xplor_file.param_file protein_rep.param _pdbx_xplor_file.topol_file protein.top _pdbx_xplor_file.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' # _struct.entry_id 2D57 _struct.title 'Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D57 _struct_keywords.pdbx_keywords 'TRANSPORT PROTEIN' _struct_keywords.text ;WATER TRANSPORT, WATER CHANNEL, AQUAPORIN, TWO-DIMENSIONAL CRYSTAL, MEMBRANE PROTEIN, BACULOVIRUS EXPRESSION SYSTEM, TRANSPORT PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLN A 10 ? GLY A 38 ? GLN A 32 GLY A 60 1 ? 29 HELX_P HELX_P2 2 PRO A 45 ? GLY A 71 ? PRO A 67 GLY A 93 1 ? 27 HELX_P HELX_P3 3 ASN A 75 ? ARG A 86 ? ASN A 97 ARG A 108 1 ? 12 HELX_P HELX_P4 4 SER A 89 ? THR A 115 ? SER A 111 THR A 137 1 ? 27 HELX_P HELX_P5 5 SER A 118 ? GLY A 122 ? SER A 140 GLY A 144 5 ? 5 HELX_P HELX_P6 6 THR A 133 ? ASP A 157 ? THR A 155 ASP A 179 1 ? 25 HELX_P HELX_P7 7 SER A 166 ? GLY A 187 ? SER A 188 GLY A 209 1 ? 22 HELX_P HELX_P8 8 ASN A 191 ? GLY A 203 ? ASN A 213 GLY A 225 1 ? 13 HELX_P HELX_P9 9 HIS A 208 ? TYR A 228 ? HIS A 230 TYR A 250 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2D57 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D57 _atom_sites.fract_transf_matrix[1][1] 0.014493 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014493 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006250 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 23 ? ? ? A . n A 1 2 VAL 2 24 ? ? ? A . n A 1 3 ALA 3 25 ? ? ? A . n A 1 4 PHE 4 26 ? ? ? A . n A 1 5 LYS 5 27 ? ? ? A . n A 1 6 GLY 6 28 ? ? ? A . n A 1 7 VAL 7 29 ? ? ? A . n A 1 8 TRP 8 30 ? ? ? A . n A 1 9 THR 9 31 31 THR THR A . n A 1 10 GLN 10 32 32 GLN GLN A . n A 1 11 ALA 11 33 33 ALA ALA A . n A 1 12 PHE 12 34 34 PHE PHE A . n A 1 13 TRP 13 35 35 TRP TRP A . n A 1 14 LYS 14 36 36 LYS LYS A . n A 1 15 ALA 15 37 37 ALA ALA A . n A 1 16 VAL 16 38 38 VAL VAL A . n A 1 17 THR 17 39 39 THR THR A . n A 1 18 ALA 18 40 40 ALA ALA A . n A 1 19 GLU 19 41 41 GLU GLU A . n A 1 20 PHE 20 42 42 PHE PHE A . n A 1 21 LEU 21 43 43 LEU LEU A . n A 1 22 ALA 22 44 44 ALA ALA A . n A 1 23 MET 23 45 45 MET MET A . n A 1 24 LEU 24 46 46 LEU LEU A . n A 1 25 ILE 25 47 47 ILE ILE A . n A 1 26 PHE 26 48 48 PHE PHE A . n A 1 27 VAL 27 49 49 VAL VAL A . n A 1 28 LEU 28 50 50 LEU LEU A . n A 1 29 LEU 29 51 51 LEU LEU A . n A 1 30 SER 30 52 52 SER SER A . n A 1 31 VAL 31 53 53 VAL VAL A . n A 1 32 GLY 32 54 54 GLY GLY A . n A 1 33 SER 33 55 55 SER SER A . n A 1 34 THR 34 56 56 THR THR A . n A 1 35 ILE 35 57 57 ILE ILE A . n A 1 36 ASN 36 58 58 ASN ASN A . n A 1 37 TRP 37 59 59 TRP TRP A . n A 1 38 GLY 38 60 60 GLY GLY A . n A 1 39 GLY 39 61 61 GLY GLY A . n A 1 40 SER 40 62 62 SER SER A . n A 1 41 GLU 41 63 63 GLU GLU A . n A 1 42 ASN 42 64 64 ASN ASN A . n A 1 43 PRO 43 65 65 PRO PRO A . n A 1 44 LEU 44 66 66 LEU LEU A . n A 1 45 PRO 45 67 67 PRO PRO A . n A 1 46 VAL 46 68 68 VAL VAL A . n A 1 47 ASP 47 69 69 ASP ASP A . n A 1 48 MET 48 70 70 MET MET A . n A 1 49 VAL 49 71 71 VAL VAL A . n A 1 50 LEU 50 72 72 LEU LEU A . n A 1 51 ILE 51 73 73 ILE ILE A . n A 1 52 SER 52 74 74 SER SER A . n A 1 53 LEU 53 75 75 LEU LEU A . n A 1 54 CYS 54 76 76 CYS CYS A . n A 1 55 PHE 55 77 77 PHE PHE A . n A 1 56 GLY 56 78 78 GLY GLY A . n A 1 57 LEU 57 79 79 LEU LEU A . n A 1 58 SER 58 80 80 SER SER A . n A 1 59 ILE 59 81 81 ILE ILE A . n A 1 60 ALA 60 82 82 ALA ALA A . n A 1 61 THR 61 83 83 THR THR A . n A 1 62 MET 62 84 84 MET MET A . n A 1 63 VAL 63 85 85 VAL VAL A . n A 1 64 GLN 64 86 86 GLN GLN A . n A 1 65 CYS 65 87 87 CYS CYS A . n A 1 66 PHE 66 88 88 PHE PHE A . n A 1 67 GLY 67 89 89 GLY GLY A . n A 1 68 HIS 68 90 90 HIS HIS A . n A 1 69 ILE 69 91 91 ILE ILE A . n A 1 70 SER 70 92 92 SER SER A . n A 1 71 GLY 71 93 93 GLY GLY A . n A 1 72 GLY 72 94 94 GLY GLY A . n A 1 73 HIS 73 95 95 HIS HIS A . n A 1 74 ILE 74 96 96 ILE ILE A . n A 1 75 ASN 75 97 97 ASN ASN A . n A 1 76 PRO 76 98 98 PRO PRO A . n A 1 77 ALA 77 99 99 ALA ALA A . n A 1 78 VAL 78 100 100 VAL VAL A . n A 1 79 THR 79 101 101 THR THR A . n A 1 80 VAL 80 102 102 VAL VAL A . n A 1 81 ALA 81 103 103 ALA ALA A . n A 1 82 MET 82 104 104 MET MET A . n A 1 83 VAL 83 105 105 VAL VAL A . n A 1 84 CYS 84 106 106 CYS CYS A . n A 1 85 THR 85 107 107 THR THR A . n A 1 86 ARG 86 108 108 ARG ARG A . n A 1 87 LYS 87 109 109 LYS LYS A . n A 1 88 ILE 88 110 110 ILE ILE A . n A 1 89 SER 89 111 111 SER SER A . n A 1 90 ILE 90 112 112 ILE ILE A . n A 1 91 ALA 91 113 113 ALA ALA A . n A 1 92 LYS 92 114 114 LYS LYS A . n A 1 93 SER 93 115 115 SER SER A . n A 1 94 VAL 94 116 116 VAL VAL A . n A 1 95 PHE 95 117 117 PHE PHE A . n A 1 96 TYR 96 118 118 TYR TYR A . n A 1 97 ILE 97 119 119 ILE ILE A . n A 1 98 THR 98 120 120 THR THR A . n A 1 99 ALA 99 121 121 ALA ALA A . n A 1 100 GLN 100 122 122 GLN GLN A . n A 1 101 CYS 101 123 123 CYS CYS A . n A 1 102 LEU 102 124 124 LEU LEU A . n A 1 103 GLY 103 125 125 GLY GLY A . n A 1 104 ALA 104 126 126 ALA ALA A . n A 1 105 ILE 105 127 127 ILE ILE A . n A 1 106 ILE 106 128 128 ILE ILE A . n A 1 107 GLY 107 129 129 GLY GLY A . n A 1 108 ALA 108 130 130 ALA ALA A . n A 1 109 GLY 109 131 131 GLY GLY A . n A 1 110 ILE 110 132 132 ILE ILE A . n A 1 111 LEU 111 133 133 LEU LEU A . n A 1 112 TYR 112 134 134 TYR TYR A . n A 1 113 LEU 113 135 135 LEU LEU A . n A 1 114 VAL 114 136 136 VAL VAL A . n A 1 115 THR 115 137 137 THR THR A . n A 1 116 PRO 116 138 138 PRO PRO A . n A 1 117 PRO 117 139 139 PRO PRO A . n A 1 118 SER 118 140 140 SER SER A . n A 1 119 VAL 119 141 141 VAL VAL A . n A 1 120 VAL 120 142 142 VAL VAL A . n A 1 121 GLY 121 143 143 GLY GLY A . n A 1 122 GLY 122 144 144 GLY GLY A . n A 1 123 LEU 123 145 145 LEU LEU A . n A 1 124 GLY 124 146 146 GLY GLY A . n A 1 125 VAL 125 147 147 VAL VAL A . n A 1 126 THR 126 148 148 THR THR A . n A 1 127 THR 127 149 149 THR THR A . n A 1 128 VAL 128 150 150 VAL VAL A . n A 1 129 HIS 129 151 151 HIS HIS A . n A 1 130 GLY 130 152 152 GLY GLY A . n A 1 131 ASN 131 153 153 ASN ASN A . n A 1 132 LEU 132 154 154 LEU LEU A . n A 1 133 THR 133 155 155 THR THR A . n A 1 134 ALA 134 156 156 ALA ALA A . n A 1 135 GLY 135 157 157 GLY GLY A . n A 1 136 HIS 136 158 158 HIS HIS A . n A 1 137 GLY 137 159 159 GLY GLY A . n A 1 138 LEU 138 160 160 LEU LEU A . n A 1 139 LEU 139 161 161 LEU LEU A . n A 1 140 VAL 140 162 162 VAL VAL A . n A 1 141 GLU 141 163 163 GLU GLU A . n A 1 142 LEU 142 164 164 LEU LEU A . n A 1 143 ILE 143 165 165 ILE ILE A . n A 1 144 ILE 144 166 166 ILE ILE A . n A 1 145 THR 145 167 167 THR THR A . n A 1 146 PHE 146 168 168 PHE PHE A . n A 1 147 GLN 147 169 169 GLN GLN A . n A 1 148 LEU 148 170 170 LEU LEU A . n A 1 149 VAL 149 171 171 VAL VAL A . n A 1 150 PHE 150 172 172 PHE PHE A . n A 1 151 THR 151 173 173 THR THR A . n A 1 152 ILE 152 174 174 ILE ILE A . n A 1 153 PHE 153 175 175 PHE PHE A . n A 1 154 ALA 154 176 176 ALA ALA A . n A 1 155 SER 155 177 177 SER SER A . n A 1 156 CYS 156 178 178 CYS CYS A . n A 1 157 ASP 157 179 179 ASP ASP A . n A 1 158 SER 158 180 180 SER SER A . n A 1 159 LYS 159 181 181 LYS LYS A . n A 1 160 ARG 160 182 182 ARG ARG A . n A 1 161 THR 161 183 183 THR THR A . n A 1 162 ASP 162 184 184 ASP ASP A . n A 1 163 VAL 163 185 185 VAL VAL A . n A 1 164 THR 164 186 186 THR THR A . n A 1 165 GLY 165 187 187 GLY GLY A . n A 1 166 SER 166 188 188 SER SER A . n A 1 167 VAL 167 189 189 VAL VAL A . n A 1 168 ALA 168 190 190 ALA ALA A . n A 1 169 LEU 169 191 191 LEU LEU A . n A 1 170 ALA 170 192 192 ALA ALA A . n A 1 171 ILE 171 193 193 ILE ILE A . n A 1 172 GLY 172 194 194 GLY GLY A . n A 1 173 PHE 173 195 195 PHE PHE A . n A 1 174 SER 174 196 196 SER SER A . n A 1 175 VAL 175 197 197 VAL VAL A . n A 1 176 ALA 176 198 198 ALA ALA A . n A 1 177 ILE 177 199 199 ILE ILE A . n A 1 178 GLY 178 200 200 GLY GLY A . n A 1 179 HIS 179 201 201 HIS HIS A . n A 1 180 LEU 180 202 202 LEU LEU A . n A 1 181 PHE 181 203 203 PHE PHE A . n A 1 182 ALA 182 204 204 ALA ALA A . n A 1 183 ILE 183 205 205 ILE ILE A . n A 1 184 ASN 184 206 206 ASN ASN A . n A 1 185 TYR 185 207 207 TYR TYR A . n A 1 186 THR 186 208 208 THR THR A . n A 1 187 GLY 187 209 209 GLY GLY A . n A 1 188 ALA 188 210 210 ALA ALA A . n A 1 189 SER 189 211 211 SER SER A . n A 1 190 MET 190 212 212 MET MET A . n A 1 191 ASN 191 213 213 ASN ASN A . n A 1 192 PRO 192 214 214 PRO PRO A . n A 1 193 ALA 193 215 215 ALA ALA A . n A 1 194 ARG 194 216 216 ARG ARG A . n A 1 195 SER 195 217 217 SER SER A . n A 1 196 PHE 196 218 218 PHE PHE A . n A 1 197 GLY 197 219 219 GLY GLY A . n A 1 198 PRO 198 220 220 PRO PRO A . n A 1 199 ALA 199 221 221 ALA ALA A . n A 1 200 VAL 200 222 222 VAL VAL A . n A 1 201 ILE 201 223 223 ILE ILE A . n A 1 202 MET 202 224 224 MET MET A . n A 1 203 GLY 203 225 225 GLY GLY A . n A 1 204 ASN 204 226 226 ASN ASN A . n A 1 205 TRP 205 227 227 TRP TRP A . n A 1 206 GLU 206 228 228 GLU GLU A . n A 1 207 ASN 207 229 229 ASN ASN A . n A 1 208 HIS 208 230 230 HIS HIS A . n A 1 209 TRP 209 231 231 TRP TRP A . n A 1 210 ILE 210 232 232 ILE ILE A . n A 1 211 TYR 211 233 233 TYR TYR A . n A 1 212 TRP 212 234 234 TRP TRP A . n A 1 213 VAL 213 235 235 VAL VAL A . n A 1 214 GLY 214 236 236 GLY GLY A . n A 1 215 PRO 215 237 237 PRO PRO A . n A 1 216 ILE 216 238 238 ILE ILE A . n A 1 217 ILE 217 239 239 ILE ILE A . n A 1 218 GLY 218 240 240 GLY GLY A . n A 1 219 ALA 219 241 241 ALA ALA A . n A 1 220 VAL 220 242 242 VAL VAL A . n A 1 221 LEU 221 243 243 LEU LEU A . n A 1 222 ALA 222 244 244 ALA ALA A . n A 1 223 GLY 223 245 245 GLY GLY A . n A 1 224 ALA 224 246 246 ALA ALA A . n A 1 225 LEU 225 247 247 LEU LEU A . n A 1 226 TYR 226 248 248 TYR TYR A . n A 1 227 GLU 227 249 249 GLU GLU A . n A 1 228 TYR 228 250 250 TYR TYR A . n A 1 229 VAL 229 251 251 VAL VAL A . n A 1 230 PHE 230 252 252 PHE PHE A . n A 1 231 CYS 231 253 253 CYS CYS A . n A 1 232 PRO 232 254 254 PRO PRO A . n A 1 233 ASP 233 255 ? ? ? A . n A 1 234 VAL 234 256 ? ? ? A . n A 1 235 GLU 235 257 ? ? ? A . n A 1 236 LEU 236 258 ? ? ? A . n A 1 237 LYS 237 259 ? ? ? A . n A 1 238 ARG 238 260 ? ? ? A . n A 1 239 ARG 239 261 ? ? ? A . n A 1 240 LEU 240 262 ? ? ? A . n A 1 241 LYS 241 263 ? ? ? A . n A 1 242 GLU 242 264 ? ? ? A . n A 1 243 ALA 243 265 ? ? ? A . n A 1 244 PHE 244 266 ? ? ? A . n A 1 245 SER 245 267 ? ? ? A . n A 1 246 LYS 246 268 ? ? ? A . n A 1 247 ALA 247 269 ? ? ? A . n A 1 248 ALA 248 270 ? ? ? A . n A 1 249 GLN 249 271 ? ? ? A . n A 1 250 GLN 250 272 ? ? ? A . n A 1 251 THR 251 273 ? ? ? A . n A 1 252 LYS 252 274 ? ? ? A . n A 1 253 GLY 253 275 ? ? ? A . n A 1 254 SER 254 276 ? ? ? A . n A 1 255 TYR 255 277 ? ? ? A . n A 1 256 MET 256 278 ? ? ? A . n A 1 257 GLU 257 279 ? ? ? A . n A 1 258 VAL 258 280 ? ? ? A . n A 1 259 GLU 259 281 ? ? ? A . n A 1 260 ASP 260 282 ? ? ? A . n A 1 261 ASN 261 283 ? ? ? A . n A 1 262 ARG 262 284 ? ? ? A . n A 1 263 SER 263 285 ? ? ? A . n A 1 264 GLN 264 286 ? ? ? A . n A 1 265 VAL 265 287 ? ? ? A . n A 1 266 GLU 266 288 ? ? ? A . n A 1 267 THR 267 289 ? ? ? A . n A 1 268 GLU 268 290 ? ? ? A . n A 1 269 ASP 269 291 ? ? ? A . n A 1 270 LEU 270 292 ? ? ? A . n A 1 271 ILE 271 293 ? ? ? A . n A 1 272 LEU 272 294 ? ? ? A . n A 1 273 LYS 273 295 ? ? ? A . n A 1 274 PRO 274 296 ? ? ? A . n A 1 275 GLY 275 297 ? ? ? A . n A 1 276 VAL 276 298 ? ? ? A . n A 1 277 VAL 277 299 ? ? ? A . n A 1 278 HIS 278 300 ? ? ? A . n A 1 279 VAL 279 301 ? ? ? A . n A 1 280 ILE 280 302 ? ? ? A . n A 1 281 ASP 281 303 ? ? ? A . n A 1 282 ILE 282 304 ? ? ? A . n A 1 283 ASP 283 305 ? ? ? A . n A 1 284 ARG 284 306 ? ? ? A . n A 1 285 GLY 285 307 ? ? ? A . n A 1 286 ASP 286 308 ? ? ? A . n A 1 287 GLU 287 309 ? ? ? A . n A 1 288 LYS 288 310 ? ? ? A . n A 1 289 LYS 289 311 ? ? ? A . n A 1 290 GLY 290 312 ? ? ? A . n A 1 291 LYS 291 313 ? ? ? A . n A 1 292 ASP 292 314 ? ? ? A . n A 1 293 SER 293 315 ? ? ? A . n A 1 294 SER 294 316 ? ? ? A . n A 1 295 GLY 295 317 ? ? ? A . n A 1 296 GLU 296 318 ? ? ? A . n A 1 297 VAL 297 319 ? ? ? A . n A 1 298 LEU 298 320 ? ? ? A . n A 1 299 SER 299 321 ? ? ? A . n A 1 300 SER 300 322 ? ? ? A . n A 1 301 VAL 301 323 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13010 ? 1 MORE -133 ? 1 'SSA (A^2)' 30580 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 69.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -y+1/2,x+1/2,z 0.0000000000 -1.0000000000 0.0000000000 34.5000000000 1.0000000000 0.0000000000 0.0000000000 34.5000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_455 y-1/2,-x+1/2,z 0.0000000000 1.0000000000 0.0000000000 -34.5000000000 -1.0000000000 0.0000000000 0.0000000000 34.5000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-31 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2023-11-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Experimental preparation' 10 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' diffrn_source 3 4 'Structure model' em_image_scans 4 4 'Structure model' em_imaging 5 4 'Structure model' em_single_particle_entity 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' database_2 9 5 'Structure model' em_vitrification 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 4 'Structure model' '_em_imaging.details' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language CNS refinement 1.1 ? 1 ? ? ? ? MRC 'data reduction' . ? 2 ? ? ? ? MRC 'data scaling' . ? 3 ? ? ? ? CNS phasing . ? 4 ? ? ? ? # _pdbx_database_remark.id 240 _pdbx_database_remark.text ; EXPERIMENT TYPE : ELECTRON DIFFRACTION DATE OF DATA COLLECTION : 01-APR-2002 TEMPERATURE (KELVIN) : 4.2 PH : 6.00 NUMBER OF CRYSTALS USED : 135 RADIATION SOURCE : JEM3000SFF OPTICS : CRYSTALS TILTED TO MAX 60 DEGREES DETECTOR TYPE : CCD DETECTOR MANUFACTURER : GATAN ULTRASCAN INTENSITY INTEGRATION SOFTWARE : PICKYCOR, AN MRC ELECTRON DIFFRACTION PROGRAM DATA SCALING SOFTWARE : MERGEDIFF,AN MRC ELECTRON DIFFRACTION PROGRAM ACCELERATION VOLTAGE (KV) : 300 NUMBER OF UNIQUE REFLECTIONS : 5992 RESOLUTION RANGE HIGH (A) : 3.20 RESOLUTION RANGE LOW (A) : 22.21 OVERALL. COMPLETENESS FOR RANGE (%) : 87.0 DATA REDUNDANCY : NULL R MERGE (I) : 0.223 R SYM (I) : NULL FOR THE DATA SET : NULL IN THE HIGHEST RESOLUTION SHELL. HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.40 COMPLETENESS FOR SHELL (%) : 85.8 DATA REDUNDANCY IN SHELL : NULL R MERGE FOR SHELL (I) : 0.445 R SYM FOR SHELL (I) : NULL FOR SHELL : NULL METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT SOFTWARE USED: CNS STARTING MODEL: PDB ENTRY 1J4N ; # _em_3d_reconstruction.entry_id 2D57 _em_3d_reconstruction.id 1 _em_3d_reconstruction.symmetry_type '2D CRYSTAL' _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_particles . _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.details ? # _em_entity_assembly.id 1 _em_entity_assembly.name 'AQUAPORIN 4 CRYSTAL' _em_entity_assembly.type COMPLEX _em_entity_assembly.parent_id 0 _em_entity_assembly.synonym ? _em_entity_assembly.details ? _em_entity_assembly.entity_id_list ? _em_entity_assembly.source ? _em_entity_assembly.oligomeric_details ? # _em_imaging.entry_id 2D57 _em_imaging.id 1 _em_imaging.specimen_id 1 _em_imaging.accelerating_voltage 300 _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode DIFFRACTION _em_imaging.microscope_model 'JEOL 3000SFF' _em_imaging.calibrated_defocus_max ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen HELIUM _em_imaging.details 'diffraction and images' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_experiment.entry_id 2D57 _em_experiment.id 1 _em_experiment.aggregation_state '2D ARRAY' _em_experiment.entity_assembly_id 1 _em_experiment.reconstruction_method CRYSTALLOGRAPHY # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CG1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 VAL _pdbx_validate_symm_contact.auth_seq_id_1 142 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 CG1 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 VAL _pdbx_validate_symm_contact.auth_seq_id_2 142 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_667 _pdbx_validate_symm_contact.dist 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 32 ? ? -0.32 -46.38 2 1 SER A 62 ? ? -103.83 43.10 3 1 GLU A 63 ? ? -114.02 55.52 4 1 ASN A 64 ? ? 41.51 78.05 5 1 ILE A 96 ? ? 24.02 48.88 6 1 ASN A 97 ? ? -176.24 118.17 7 1 ARG A 108 ? ? 74.48 95.16 8 1 LYS A 109 ? ? -149.74 -63.67 9 1 SER A 111 ? ? -47.16 151.81 10 1 THR A 137 ? ? -118.67 55.08 11 1 VAL A 142 ? ? -30.57 -35.72 12 1 VAL A 147 ? ? -95.74 57.84 13 1 THR A 148 ? ? -58.26 87.64 14 1 VAL A 150 ? ? -26.74 87.92 15 1 HIS A 151 ? ? -69.50 -73.89 16 1 THR A 155 ? ? -28.99 116.90 17 1 ALA A 156 ? ? -14.03 -46.48 18 1 ASP A 179 ? ? -44.61 164.25 19 1 LYS A 181 ? ? 40.19 100.95 20 1 THR A 183 ? ? -61.05 18.74 21 1 ASP A 184 ? ? 60.76 90.98 22 1 MET A 212 ? ? 30.62 31.32 23 1 ASN A 213 ? ? -177.12 98.92 24 1 TRP A 227 ? ? -115.12 65.37 25 1 TYR A 250 ? ? -72.85 -112.74 26 1 VAL A 251 ? ? -36.70 -20.14 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 233 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.064 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 23 ? A MET 1 2 1 Y 1 A VAL 24 ? A VAL 2 3 1 Y 1 A ALA 25 ? A ALA 3 4 1 Y 1 A PHE 26 ? A PHE 4 5 1 Y 1 A LYS 27 ? A LYS 5 6 1 Y 1 A GLY 28 ? A GLY 6 7 1 Y 1 A VAL 29 ? A VAL 7 8 1 Y 1 A TRP 30 ? A TRP 8 9 1 Y 1 A ASP 255 ? A ASP 233 10 1 Y 1 A VAL 256 ? A VAL 234 11 1 Y 1 A GLU 257 ? A GLU 235 12 1 Y 1 A LEU 258 ? A LEU 236 13 1 Y 1 A LYS 259 ? A LYS 237 14 1 Y 1 A ARG 260 ? A ARG 238 15 1 Y 1 A ARG 261 ? A ARG 239 16 1 Y 1 A LEU 262 ? A LEU 240 17 1 Y 1 A LYS 263 ? A LYS 241 18 1 Y 1 A GLU 264 ? A GLU 242 19 1 Y 1 A ALA 265 ? A ALA 243 20 1 Y 1 A PHE 266 ? A PHE 244 21 1 Y 1 A SER 267 ? A SER 245 22 1 Y 1 A LYS 268 ? A LYS 246 23 1 Y 1 A ALA 269 ? A ALA 247 24 1 Y 1 A ALA 270 ? A ALA 248 25 1 Y 1 A GLN 271 ? A GLN 249 26 1 Y 1 A GLN 272 ? A GLN 250 27 1 Y 1 A THR 273 ? A THR 251 28 1 Y 1 A LYS 274 ? A LYS 252 29 1 Y 1 A GLY 275 ? A GLY 253 30 1 Y 1 A SER 276 ? A SER 254 31 1 Y 1 A TYR 277 ? A TYR 255 32 1 Y 1 A MET 278 ? A MET 256 33 1 Y 1 A GLU 279 ? A GLU 257 34 1 Y 1 A VAL 280 ? A VAL 258 35 1 Y 1 A GLU 281 ? A GLU 259 36 1 Y 1 A ASP 282 ? A ASP 260 37 1 Y 1 A ASN 283 ? A ASN 261 38 1 Y 1 A ARG 284 ? A ARG 262 39 1 Y 1 A SER 285 ? A SER 263 40 1 Y 1 A GLN 286 ? A GLN 264 41 1 Y 1 A VAL 287 ? A VAL 265 42 1 Y 1 A GLU 288 ? A GLU 266 43 1 Y 1 A THR 289 ? A THR 267 44 1 Y 1 A GLU 290 ? A GLU 268 45 1 Y 1 A ASP 291 ? A ASP 269 46 1 Y 1 A LEU 292 ? A LEU 270 47 1 Y 1 A ILE 293 ? A ILE 271 48 1 Y 1 A LEU 294 ? A LEU 272 49 1 Y 1 A LYS 295 ? A LYS 273 50 1 Y 1 A PRO 296 ? A PRO 274 51 1 Y 1 A GLY 297 ? A GLY 275 52 1 Y 1 A VAL 298 ? A VAL 276 53 1 Y 1 A VAL 299 ? A VAL 277 54 1 Y 1 A HIS 300 ? A HIS 278 55 1 Y 1 A VAL 301 ? A VAL 279 56 1 Y 1 A ILE 302 ? A ILE 280 57 1 Y 1 A ASP 303 ? A ASP 281 58 1 Y 1 A ILE 304 ? A ILE 282 59 1 Y 1 A ASP 305 ? A ASP 283 60 1 Y 1 A ARG 306 ? A ARG 284 61 1 Y 1 A GLY 307 ? A GLY 285 62 1 Y 1 A ASP 308 ? A ASP 286 63 1 Y 1 A GLU 309 ? A GLU 287 64 1 Y 1 A LYS 310 ? A LYS 288 65 1 Y 1 A LYS 311 ? A LYS 289 66 1 Y 1 A GLY 312 ? A GLY 290 67 1 Y 1 A LYS 313 ? A LYS 291 68 1 Y 1 A ASP 314 ? A ASP 292 69 1 Y 1 A SER 315 ? A SER 293 70 1 Y 1 A SER 316 ? A SER 294 71 1 Y 1 A GLY 317 ? A GLY 295 72 1 Y 1 A GLU 318 ? A GLU 296 73 1 Y 1 A VAL 319 ? A VAL 297 74 1 Y 1 A LEU 320 ? A LEU 298 75 1 Y 1 A SER 321 ? A SER 299 76 1 Y 1 A SER 322 ? A SER 300 77 1 Y 1 A VAL 323 ? A VAL 301 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_embedding.details '7% trehalose' _em_embedding.id 1 _em_embedding.material trehalose _em_embedding.specimen_id 1 # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.film_or_detector_model . _em_image_recording.avg_electron_dose_per_image . _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_diffraction_images ? _em_image_recording.num_real_images ? _em_image_recording.detector_mode ? # _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.concentration ? _em_specimen.vitrification_applied YES _em_specimen.staining_applied NO _em_specimen.embedding_applied YES _em_specimen.shadowing_applied NO _em_specimen.details ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1J4N _pdbx_initial_refinement_model.details 'PDB ENTRY 1J4N' #