HEADER    HYDROLASE                               06-NOV-05   2D5U              
TITLE     SOLUTION STRUCTURE OF THE N-TERMINAL PORTION OF THE PUB DOMAIN OF     
TITLE    2 MOUSE PEPTIDE:N-GLYCANASE                                            
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: N-GLYCANASE 1;                                             
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: PUB DOMAIN;                                                
COMPND   5 EC: 3.5.1.52;                                                        
COMPND   6 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;                                   
SOURCE   3 ORGANISM_COMMON: HOUSE MOUSE;                                        
SOURCE   4 ORGANISM_TAXID: 10090;                                               
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS;                       
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1                                  
KEYWDS    PNGASE, HYDROLASE                                                     
EXPDTA    SOLUTION NMR                                                          
NUMMDL    10                                                                    
AUTHOR    H.SASAKAWA,T.HIRAO,Y.YAMAGUCHI,T.SUZUKI,K.KATO                        
REVDAT   4   29-MAY-24 2D5U    1       REMARK                                   
REVDAT   3   09-MAR-22 2D5U    1       REMARK SEQADV                            
REVDAT   2   24-FEB-09 2D5U    1       VERSN                                    
REVDAT   1   21-NOV-06 2D5U    0                                                
JRNL        AUTH   H.SASAKAWA,T.HIRAO,Y.YAMAGUCHI,T.SUZUKI,K.KATO               
JRNL        TITL   SOLUTION STRUCTURE OF THE N-TERMINAL PORTION OF THE PUB      
JRNL        TITL 2 DOMAIN OF MOUSE PEPTIDE:N-GLYCANASE                          
JRNL        REF    TO BE PUBLISHED                                              
JRNL        REFN                                                                
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XWINNMR 3.8, CYANA 2.0                               
REMARK   3   AUTHORS     : GUNTERT (CYANA)                                      
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF    
REMARK   3  1460 RESTRAINTS, 1272 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 152     
REMARK   3  DIHEDRAL ANGLE RESTRAINTS, 36 DISTANCE RESTRAINTS FOR HYDROGEN      
REMARK   3  BONDS.                                                              
REMARK   4                                                                      
REMARK   4 2D5U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-05.                  
REMARK 100 THE DEPOSITION ID IS D_1000025023.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 303                                
REMARK 210  PH                             : 5.0                                
REMARK 210  IONIC STRENGTH                 : 5                                  
REMARK 210  PRESSURE                       : 1 ATM                              
REMARK 210  SAMPLE CONTENTS                : 1.0MM N-TERMINAL PORTION OF THE    
REMARK 210                                   PUB DOMAIN U-15N,13C; 10MM MES,    
REMARK 210                                   90% H2O, 10% D2O; 1.0MM N-         
REMARK 210                                   TERMINAL PORTION OF THE PUB        
REMARK 210                                   DOMAIN; 10MM MES, 99% D2O          
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_13C-SEPARATED_ROESY; 3D_15N     
REMARK 210                                   -SEPARATED_NOESY; 2D NOESY         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NMRPIPE 2004513, OLIVIA 1.10,      
REMARK 210                                   CYANA 2.0                          
REMARK 210   METHOD USED                   : DISTANCE GEOMETRY SIMULATED        
REMARK 210                                   ANNEALING                          
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 10                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION                    
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ALA A   9     -176.54   -170.37                                   
REMARK 500  1 LEU A  11      -72.87   -107.85                                   
REMARK 500  1 SER A  13      118.39   -177.56                                   
REMARK 500  1 SER A  14      -36.28   -178.94                                   
REMARK 500  1 SER A  16      -74.22    -68.99                                   
REMARK 500  1 SER A  17       73.80   -118.93                                   
REMARK 500  1 ALA A  18      174.99     60.19                                   
REMARK 500  1 SER A  19       68.27   -179.51                                   
REMARK 500  1 ASN A  28      -60.83    -97.76                                   
REMARK 500  1 THR A  29      149.53   -172.95                                   
REMARK 500  1 ILE A  61       64.21   -151.91                                   
REMARK 500  1 LEU A  70      -36.08    175.18                                   
REMARK 500  1 SER A 121       70.90     52.05                                   
REMARK 500  2 PRO A   2     -179.64    -69.68                                   
REMARK 500  2 LEU A   3      -67.17   -121.81                                   
REMARK 500  2 SER A   5     -170.65     52.65                                   
REMARK 500  2 MET A   6       26.02   -157.94                                   
REMARK 500  2 ALA A   7     -173.12     53.77                                   
REMARK 500  2 LEU A  11      -47.11   -139.29                                   
REMARK 500  2 SER A  13      137.30   -178.85                                   
REMARK 500  2 SER A  14      -36.16   -179.22                                   
REMARK 500  2 ALA A  18      157.27     64.21                                   
REMARK 500  2 SER A  19       68.26   -179.66                                   
REMARK 500  2 ASN A  28      -60.08    -97.34                                   
REMARK 500  2 THR A  29      149.23   -172.61                                   
REMARK 500  2 ILE A  61       59.56   -142.28                                   
REMARK 500  2 ARG A  69       81.18   -154.54                                   
REMARK 500  2 LEU A  70      -32.30    173.39                                   
REMARK 500  2 SER A 121       82.07     51.87                                   
REMARK 500  3 SER A   5      163.99     63.07                                   
REMARK 500  3 MET A   6      -40.65   -171.18                                   
REMARK 500  3 ALA A   7      171.53     62.14                                   
REMARK 500  3 SER A   8      110.56   -179.28                                   
REMARK 500  3 THR A  10       75.23   -173.44                                   
REMARK 500  3 ALA A  18      157.47     64.32                                   
REMARK 500  3 SER A  19       68.37   -179.75                                   
REMARK 500  3 LEU A  70      -48.73    173.57                                   
REMARK 500  3 PHE A  85      162.91    -46.82                                   
REMARK 500  3 SER A 121       81.79     53.13                                   
REMARK 500  4 SER A   8      121.77   -178.58                                   
REMARK 500  4 ALA A   9      143.68   -178.21                                   
REMARK 500  4 ALA A  18      140.27     66.52                                   
REMARK 500  4 SER A  19       64.20   -174.72                                   
REMARK 500  4 THR A  29      147.96   -174.55                                   
REMARK 500  4 ARG A  69       86.77   -154.68                                   
REMARK 500  4 LEU A  70      -40.86    174.31                                   
REMARK 500  4 SER A 121       79.50     53.40                                   
REMARK 500  5 PRO A   2     -178.59    -69.75                                   
REMARK 500  5 ALA A   7     -177.06     63.76                                   
REMARK 500  5 SER A   8      -67.21   -157.12                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     121 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  2D5U A    6   124  GB     31981178 NP_067479        1    119             
SEQADV 2D5U GLY A    1  GB   31981178            CLONING ARTIFACT               
SEQADV 2D5U PRO A    2  GB   31981178            CLONING ARTIFACT               
SEQADV 2D5U LEU A    3  GB   31981178            CLONING ARTIFACT               
SEQADV 2D5U GLY A    4  GB   31981178            CLONING ARTIFACT               
SEQADV 2D5U SER A    5  GB   31981178            CLONING ARTIFACT               
SEQRES   1 A  124  GLY PRO LEU GLY SER MET ALA SER ALA THR LEU GLY SER          
SEQRES   2 A  124  SER SER SER SER ALA SER PRO ALA VAL ALA GLU LEU CYS          
SEQRES   3 A  124  GLN ASN THR PRO GLU THR PHE LEU GLU ALA SER LYS LEU          
SEQRES   4 A  124  LEU LEU THR TYR ALA ASP ASN ILE LEU ARG ASN PRO SER          
SEQRES   5 A  124  ASP GLU LYS TYR ARG SER ILE ARG ILE GLY ASN THR ALA          
SEQRES   6 A  124  PHE SER THR ARG LEU LEU PRO VAL ARG GLY ALA VAL GLU          
SEQRES   7 A  124  CYS LEU PHE GLU MET GLY PHE GLU GLU GLY GLU THR HIS          
SEQRES   8 A  124  LEU ILE PHE PRO LYS LYS ALA SER VAL GLU GLN LEU GLN          
SEQRES   9 A  124  LYS ILE ARG ASP LEU ILE ALA ILE GLU ARG SER SER ARG          
SEQRES  10 A  124  LEU ASP GLY SER SER LYS LYS                                  
HELIX    1   1 SER A   19  GLN A   27  1                                   9    
HELIX    2   2 THR A   29  ASN A   50  1                                  22    
HELIX    3   3 ASP A   53  TYR A   56  5                                   4    
HELIX    4   4 ASN A   63  ARG A   69  1                                   7    
HELIX    5   5 GLY A   75  GLY A   84  1                                  10    
HELIX    6   6 SER A   99  ASP A  119  1                                  21    
SHEET    1   A 2 SER A  58  ARG A  60  0                                        
SHEET    2   A 2 HIS A  91  ILE A  93 -1  O  LEU A  92   N  ILE A  59           
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1