HEADER HYDROLASE 06-NOV-05 2D5U TITLE SOLUTION STRUCTURE OF THE N-TERMINAL PORTION OF THE PUB DOMAIN OF TITLE 2 MOUSE PEPTIDE:N-GLYCANASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-GLYCANASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PUB DOMAIN; COMPND 5 EC: 3.5.1.52; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODONPLUS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P-1 KEYWDS PNGASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR H.SASAKAWA,T.HIRAO,Y.YAMAGUCHI,T.SUZUKI,K.KATO REVDAT 4 29-MAY-24 2D5U 1 REMARK REVDAT 3 09-MAR-22 2D5U 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D5U 1 VERSN REVDAT 1 21-NOV-06 2D5U 0 JRNL AUTH H.SASAKAWA,T.HIRAO,Y.YAMAGUCHI,T.SUZUKI,K.KATO JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL PORTION OF THE PUB JRNL TITL 2 DOMAIN OF MOUSE PEPTIDE:N-GLYCANASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.8, CYANA 2.0 REMARK 3 AUTHORS : GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1460 RESTRAINTS, 1272 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 152 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 36 DISTANCE RESTRAINTS FOR HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 2D5U COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000025023. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : 5 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0MM N-TERMINAL PORTION OF THE REMARK 210 PUB DOMAIN U-15N,13C; 10MM MES, REMARK 210 90% H2O, 10% D2O; 1.0MM N- REMARK 210 TERMINAL PORTION OF THE PUB REMARK 210 DOMAIN; 10MM MES, 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_ROESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2004513, OLIVIA 1.10, REMARK 210 CYANA 2.0 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 9 -176.54 -170.37 REMARK 500 1 LEU A 11 -72.87 -107.85 REMARK 500 1 SER A 13 118.39 -177.56 REMARK 500 1 SER A 14 -36.28 -178.94 REMARK 500 1 SER A 16 -74.22 -68.99 REMARK 500 1 SER A 17 73.80 -118.93 REMARK 500 1 ALA A 18 174.99 60.19 REMARK 500 1 SER A 19 68.27 -179.51 REMARK 500 1 ASN A 28 -60.83 -97.76 REMARK 500 1 THR A 29 149.53 -172.95 REMARK 500 1 ILE A 61 64.21 -151.91 REMARK 500 1 LEU A 70 -36.08 175.18 REMARK 500 1 SER A 121 70.90 52.05 REMARK 500 2 PRO A 2 -179.64 -69.68 REMARK 500 2 LEU A 3 -67.17 -121.81 REMARK 500 2 SER A 5 -170.65 52.65 REMARK 500 2 MET A 6 26.02 -157.94 REMARK 500 2 ALA A 7 -173.12 53.77 REMARK 500 2 LEU A 11 -47.11 -139.29 REMARK 500 2 SER A 13 137.30 -178.85 REMARK 500 2 SER A 14 -36.16 -179.22 REMARK 500 2 ALA A 18 157.27 64.21 REMARK 500 2 SER A 19 68.26 -179.66 REMARK 500 2 ASN A 28 -60.08 -97.34 REMARK 500 2 THR A 29 149.23 -172.61 REMARK 500 2 ILE A 61 59.56 -142.28 REMARK 500 2 ARG A 69 81.18 -154.54 REMARK 500 2 LEU A 70 -32.30 173.39 REMARK 500 2 SER A 121 82.07 51.87 REMARK 500 3 SER A 5 163.99 63.07 REMARK 500 3 MET A 6 -40.65 -171.18 REMARK 500 3 ALA A 7 171.53 62.14 REMARK 500 3 SER A 8 110.56 -179.28 REMARK 500 3 THR A 10 75.23 -173.44 REMARK 500 3 ALA A 18 157.47 64.32 REMARK 500 3 SER A 19 68.37 -179.75 REMARK 500 3 LEU A 70 -48.73 173.57 REMARK 500 3 PHE A 85 162.91 -46.82 REMARK 500 3 SER A 121 81.79 53.13 REMARK 500 4 SER A 8 121.77 -178.58 REMARK 500 4 ALA A 9 143.68 -178.21 REMARK 500 4 ALA A 18 140.27 66.52 REMARK 500 4 SER A 19 64.20 -174.72 REMARK 500 4 THR A 29 147.96 -174.55 REMARK 500 4 ARG A 69 86.77 -154.68 REMARK 500 4 LEU A 70 -40.86 174.31 REMARK 500 4 SER A 121 79.50 53.40 REMARK 500 5 PRO A 2 -178.59 -69.75 REMARK 500 5 ALA A 7 -177.06 63.76 REMARK 500 5 SER A 8 -67.21 -157.12 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2D5U A 6 124 GB 31981178 NP_067479 1 119 SEQADV 2D5U GLY A 1 GB 31981178 CLONING ARTIFACT SEQADV 2D5U PRO A 2 GB 31981178 CLONING ARTIFACT SEQADV 2D5U LEU A 3 GB 31981178 CLONING ARTIFACT SEQADV 2D5U GLY A 4 GB 31981178 CLONING ARTIFACT SEQADV 2D5U SER A 5 GB 31981178 CLONING ARTIFACT SEQRES 1 A 124 GLY PRO LEU GLY SER MET ALA SER ALA THR LEU GLY SER SEQRES 2 A 124 SER SER SER SER ALA SER PRO ALA VAL ALA GLU LEU CYS SEQRES 3 A 124 GLN ASN THR PRO GLU THR PHE LEU GLU ALA SER LYS LEU SEQRES 4 A 124 LEU LEU THR TYR ALA ASP ASN ILE LEU ARG ASN PRO SER SEQRES 5 A 124 ASP GLU LYS TYR ARG SER ILE ARG ILE GLY ASN THR ALA SEQRES 6 A 124 PHE SER THR ARG LEU LEU PRO VAL ARG GLY ALA VAL GLU SEQRES 7 A 124 CYS LEU PHE GLU MET GLY PHE GLU GLU GLY GLU THR HIS SEQRES 8 A 124 LEU ILE PHE PRO LYS LYS ALA SER VAL GLU GLN LEU GLN SEQRES 9 A 124 LYS ILE ARG ASP LEU ILE ALA ILE GLU ARG SER SER ARG SEQRES 10 A 124 LEU ASP GLY SER SER LYS LYS HELIX 1 1 SER A 19 GLN A 27 1 9 HELIX 2 2 THR A 29 ASN A 50 1 22 HELIX 3 3 ASP A 53 TYR A 56 5 4 HELIX 4 4 ASN A 63 ARG A 69 1 7 HELIX 5 5 GLY A 75 GLY A 84 1 10 HELIX 6 6 SER A 99 ASP A 119 1 21 SHEET 1 A 2 SER A 58 ARG A 60 0 SHEET 2 A 2 HIS A 91 ILE A 93 -1 O LEU A 92 N ILE A 59 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1