HEADER HYDROLASE 18-NOV-05 2D7E TITLE CRYSTAL STRUCTURE OF N-TERMINAL DOMAIN OF PRIA FROM E.COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIMOSOMAL PROTEIN N'; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: DNA BINDING DOMEIN; COMPND 5 SYNONYM: ATP-DEPENDENT HELICASE PRIA, REPLICATION FACTOR Y; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PRIA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS INTER-TWINED, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SASAKI,T.OSE,K.MAENAKA,H.MASAI,D.KOHDA REVDAT 5 13-MAR-24 2D7E 1 REMARK REVDAT 4 27-FEB-19 2D7E 1 JRNL REVDAT 3 24-FEB-09 2D7E 1 VERSN REVDAT 2 19-DEC-06 2D7E 1 REMARK REVDAT 1 07-NOV-06 2D7E 0 JRNL AUTH K.SASAKI,T.OSE,N.OKAMOTO,K.MAENAKA,T.TANAKA,H.MASAI,M.SAITO, JRNL AUTH 2 T.SHIRAI,D.KOHDA JRNL TITL STRUCTURAL BASIS OF THE 3'-END RECOGNITION OF A LEADING JRNL TITL 2 STRAND IN STALLED REPLICATION FORKS BY PRIA. JRNL REF EMBO J. V. 26 2584 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17464287 JRNL DOI 10.1038/SJ.EMBOJ.7601697 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.SASAKI,T.OSE,T.TANAKA,T.MIZUKOSHI,T.ISHIGAKI,K.MAENAKA, REMARK 1 AUTH 2 H.MASAI,D.KOHDA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 THE N-TERMINAL DOMAIN OF PRIA FROM ESCHERICHIA COLI REMARK 1 REF BIOCHIM.BIOPHYS.ACTA V.1764 157 2006 REMARK 1 REFN ISSN 0006-3002 REMARK 1 PMID 16226927 REMARK 1 DOI 10.1016/J.BBAPAP.2005.09.007 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 19914 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1418 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3234 REMARK 3 BIN FREE R VALUE : 0.3848 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 73 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3296 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20700 REMARK 3 B22 (A**2) : -2.76600 REMARK 3 B33 (A**2) : 2.97300 REMARK 3 B12 (A**2) : -4.26700 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.31 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.36 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.485 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.81 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.140 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED WEIGHTED FULL MATRIX LEAST SQUARES REMARK 3 PROCEDURE REMARK 4 REMARK 4 2D7E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-NOV-05. REMARK 100 THE DEPOSITION ID IS D_1000025079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-05; 26-JAN-05 REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SPRING-8; PHOTON FACTORY REMARK 200 BEAMLINE : BL12B2; BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000; 0.97899, 0.97957, REMARK 200 0.94000 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; ADSC QUAMTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20806 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 12.55 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, 0.3M AMMONIUM REMARK 280 SULFATE, PH 4.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 55.78500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.20748 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 86.85000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 55.78500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 32.20748 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 86.85000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 55.78500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 32.20748 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 86.85000 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 55.78500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 32.20748 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 86.85000 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 55.78500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 32.20748 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 86.85000 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 55.78500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 32.20748 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 86.85000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 64.41497 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 173.70000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 64.41497 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 173.70000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 64.41497 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 173.70000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 64.41497 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 173.70000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 64.41497 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 173.70000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 64.41497 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 173.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 111.57000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -64.41497 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 86.85000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 105 REMARK 465 MET D 1 REMARK 465 ARG D 105 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 11 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 2 -90.88 -36.35 REMARK 500 LEU A 12 -90.14 -17.01 REMARK 500 ALA A 28 151.14 -47.96 REMARK 500 GLN A 39 23.56 -162.12 REMARK 500 PRO B 9 42.14 -82.68 REMARK 500 VAL B 10 162.24 -38.06 REMARK 500 PRO B 11 -172.10 -57.74 REMARK 500 LYS B 38 81.57 -60.74 REMARK 500 GLN B 39 -149.13 175.51 REMARK 500 GLU B 41 160.14 -45.45 REMARK 500 ARG B 42 130.71 -174.40 REMARK 500 GLU B 59 46.55 -97.70 REMARK 500 VAL B 64 -73.21 -129.52 REMARK 500 LEU C 12 -85.67 -17.97 REMARK 500 PRO C 21 -177.47 -65.12 REMARK 500 LYS C 38 -33.56 -139.26 REMARK 500 GLN C 39 -88.43 -88.49 REMARK 500 SER C 50 172.96 178.62 REMARK 500 ASP C 51 38.36 -99.91 REMARK 500 GLU C 54 51.43 -64.65 REMARK 500 ASN C 58 -16.61 -179.96 REMARK 500 LEU C 104 58.61 -67.66 REMARK 500 PRO D 9 32.21 -80.82 REMARK 500 VAL D 10 128.83 -33.39 REMARK 500 LEU D 12 -84.07 8.71 REMARK 500 GLU D 22 -37.08 -32.15 REMARK 500 LYS D 38 69.81 12.07 REMARK 500 GLN D 39 -77.54 -175.56 REMARK 500 ARG D 42 159.09 178.00 REMARK 500 SER D 50 -152.11 -101.36 REMARK 500 LEU D 57 0.08 -47.53 REMARK 500 ASN D 58 11.07 -151.32 REMARK 500 VAL D 72 12.85 -59.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 2D7E A 1 105 UNP P17888 PRIA_ECOLI 1 105 DBREF 2D7E B 1 105 UNP P17888 PRIA_ECOLI 1 105 DBREF 2D7E C 1 105 UNP P17888 PRIA_ECOLI 1 105 DBREF 2D7E D 1 105 UNP P17888 PRIA_ECOLI 1 105 SEQRES 1 A 105 MET PRO VAL ALA HIS VAL ALA LEU PRO VAL PRO LEU PRO SEQRES 2 A 105 ARG THR PHE ASP TYR LEU LEU PRO GLU GLY MET THR VAL SEQRES 3 A 105 LYS ALA GLY CYS ARG VAL ARG VAL PRO PHE GLY LYS GLN SEQRES 4 A 105 GLN GLU ARG ILE GLY ILE VAL VAL SER VAL SER ASP ALA SEQRES 5 A 105 SER GLU LEU PRO LEU ASN GLU LEU LYS ALA VAL VAL GLU SEQRES 6 A 105 VAL LEU ASP SER GLU PRO VAL PHE THR HIS SER VAL TRP SEQRES 7 A 105 ARG LEU LEU LEU TRP ALA ALA ASP TYR TYR HIS HIS PRO SEQRES 8 A 105 ILE GLY ASP VAL LEU PHE HIS ALA LEU PRO ILE LEU LEU SEQRES 9 A 105 ARG SEQRES 1 B 105 MET PRO VAL ALA HIS VAL ALA LEU PRO VAL PRO LEU PRO SEQRES 2 B 105 ARG THR PHE ASP TYR LEU LEU PRO GLU GLY MET THR VAL SEQRES 3 B 105 LYS ALA GLY CYS ARG VAL ARG VAL PRO PHE GLY LYS GLN SEQRES 4 B 105 GLN GLU ARG ILE GLY ILE VAL VAL SER VAL SER ASP ALA SEQRES 5 B 105 SER GLU LEU PRO LEU ASN GLU LEU LYS ALA VAL VAL GLU SEQRES 6 B 105 VAL LEU ASP SER GLU PRO VAL PHE THR HIS SER VAL TRP SEQRES 7 B 105 ARG LEU LEU LEU TRP ALA ALA ASP TYR TYR HIS HIS PRO SEQRES 8 B 105 ILE GLY ASP VAL LEU PHE HIS ALA LEU PRO ILE LEU LEU SEQRES 9 B 105 ARG SEQRES 1 C 105 MET PRO VAL ALA HIS VAL ALA LEU PRO VAL PRO LEU PRO SEQRES 2 C 105 ARG THR PHE ASP TYR LEU LEU PRO GLU GLY MET THR VAL SEQRES 3 C 105 LYS ALA GLY CYS ARG VAL ARG VAL PRO PHE GLY LYS GLN SEQRES 4 C 105 GLN GLU ARG ILE GLY ILE VAL VAL SER VAL SER ASP ALA SEQRES 5 C 105 SER GLU LEU PRO LEU ASN GLU LEU LYS ALA VAL VAL GLU SEQRES 6 C 105 VAL LEU ASP SER GLU PRO VAL PHE THR HIS SER VAL TRP SEQRES 7 C 105 ARG LEU LEU LEU TRP ALA ALA ASP TYR TYR HIS HIS PRO SEQRES 8 C 105 ILE GLY ASP VAL LEU PHE HIS ALA LEU PRO ILE LEU LEU SEQRES 9 C 105 ARG SEQRES 1 D 105 MET PRO VAL ALA HIS VAL ALA LEU PRO VAL PRO LEU PRO SEQRES 2 D 105 ARG THR PHE ASP TYR LEU LEU PRO GLU GLY MET THR VAL SEQRES 3 D 105 LYS ALA GLY CYS ARG VAL ARG VAL PRO PHE GLY LYS GLN SEQRES 4 D 105 GLN GLU ARG ILE GLY ILE VAL VAL SER VAL SER ASP ALA SEQRES 5 D 105 SER GLU LEU PRO LEU ASN GLU LEU LYS ALA VAL VAL GLU SEQRES 6 D 105 VAL LEU ASP SER GLU PRO VAL PHE THR HIS SER VAL TRP SEQRES 7 D 105 ARG LEU LEU LEU TRP ALA ALA ASP TYR TYR HIS HIS PRO SEQRES 8 D 105 ILE GLY ASP VAL LEU PHE HIS ALA LEU PRO ILE LEU LEU SEQRES 9 D 105 ARG FORMUL 5 HOH *56(H2 O) HELIX 1 1 PRO A 56 LEU A 60 5 5 HELIX 2 2 THR A 74 TYR A 88 1 15 HELIX 3 3 PRO A 91 ARG A 105 1 15 HELIX 4 4 THR B 74 TYR B 88 1 15 HELIX 5 5 PRO B 91 LEU B 104 1 14 HELIX 6 6 THR C 74 TYR C 88 1 15 HELIX 7 7 PRO C 91 LEU C 104 1 14 HELIX 8 8 THR D 74 TYR D 88 1 15 HELIX 9 9 PRO D 91 LEU D 104 1 14 SHEET 1 A 5 PHE B 16 LEU B 19 0 SHEET 2 A 5 VAL A 3 ALA A 7 -1 N VAL A 6 O PHE B 16 SHEET 3 A 5 ILE B 43 VAL B 49 -1 O ILE B 45 N ALA A 7 SHEET 4 A 5 ARG B 31 ARG B 33 -1 N VAL B 32 O GLY B 44 SHEET 5 A 5 GLU B 65 VAL B 66 -1 O GLU B 65 N ARG B 33 SHEET 1 B 5 PHE A 16 LEU A 19 0 SHEET 2 B 5 VAL B 3 ALA B 7 -1 O VAL B 6 N PHE A 16 SHEET 3 B 5 GLN A 40 SER A 50 -1 N SER A 48 O HIS B 5 SHEET 4 B 5 ARG A 31 PHE A 36 -1 N VAL A 32 O GLY A 44 SHEET 5 B 5 GLU A 65 VAL A 66 -1 O GLU A 65 N ARG A 33 SHEET 1 C 5 PHE D 16 LEU D 19 0 SHEET 2 C 5 VAL C 3 ALA C 7 -1 N VAL C 6 O PHE D 16 SHEET 3 C 5 GLN D 40 SER D 50 -1 O SER D 48 N HIS C 5 SHEET 4 C 5 ARG D 31 PHE D 36 -1 N VAL D 32 O GLY D 44 SHEET 5 C 5 GLU D 65 VAL D 66 -1 O GLU D 65 N ARG D 33 SHEET 1 D 5 PHE C 16 LEU C 19 0 SHEET 2 D 5 VAL D 3 ALA D 7 -1 O VAL D 6 N PHE C 16 SHEET 3 D 5 GLU C 41 SER C 50 -1 N SER C 50 O VAL D 3 SHEET 4 D 5 ARG C 31 PRO C 35 -1 N VAL C 34 O ARG C 42 SHEET 5 D 5 GLU C 65 VAL C 66 -1 O GLU C 65 N ARG C 33 CRYST1 111.570 111.570 260.550 90.00 90.00 120.00 H 3 2 72 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008963 0.005175 0.000000 0.00000 SCALE2 0.000000 0.010350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003838 0.00000