HEADER SIGNALING PROTEIN, PROTEIN BINDING 02-DEC-05 2D86 TITLE SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN VAV-3 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VAV-3 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: VAV3; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050404-11; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ALL ALPHA, CALPONIN HOMOLOGY DOMAIN, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING KEYWDS 4 PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2D86 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D86 1 VERSN REVDAT 1 02-DEC-06 2D86 0 JRNL AUTH T.TOMIZAWA,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CH DOMAIN FROM HUMAN VAV-3 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D86 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025107. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM CH DOMAIN U-15N,13C; 20MM REMARK 210 D-TRIS-HCL(PH 7.0); 100MM NACL; REMARK 210 1MM D-DTT; 0.02% NAN3; 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 99.49 -66.84 REMARK 500 1 PHE A 93 -61.03 -93.70 REMARK 500 1 LEU A 100 157.32 -38.43 REMARK 500 1 THR A 125 146.48 -36.02 REMARK 500 1 PRO A 126 2.01 -69.73 REMARK 500 1 ARG A 134 96.17 -32.84 REMARK 500 2 SER A 5 93.21 -64.24 REMARK 500 2 GLU A 9 152.56 -45.09 REMARK 500 2 HIS A 28 170.40 -50.48 REMARK 500 2 GLN A 75 -39.08 -38.03 REMARK 500 2 ASP A 105 -38.30 -36.79 REMARK 500 2 ARG A 134 98.68 -36.28 REMARK 500 2 SER A 138 143.32 -171.40 REMARK 500 2 PRO A 140 95.07 -69.80 REMARK 500 3 HIS A 28 -175.92 -53.14 REMARK 500 3 ALA A 35 160.01 -43.67 REMARK 500 3 GLN A 72 43.36 34.44 REMARK 500 3 VAL A 109 43.14 38.28 REMARK 500 3 PRO A 126 0.50 -69.77 REMARK 500 3 ARG A 134 98.68 -36.36 REMARK 500 3 PHE A 136 156.49 -49.05 REMARK 500 3 SER A 138 112.65 -34.34 REMARK 500 3 PRO A 140 95.01 -69.77 REMARK 500 4 SER A 2 98.22 -53.32 REMARK 500 4 SER A 5 40.36 -106.38 REMARK 500 4 GLU A 9 161.45 -47.40 REMARK 500 4 HIS A 28 168.98 -46.76 REMARK 500 4 ALA A 35 160.35 -49.05 REMARK 500 4 GLN A 72 35.02 70.27 REMARK 500 4 LEU A 77 -70.00 -71.72 REMARK 500 4 PHE A 93 -64.32 -90.92 REMARK 500 4 ASP A 105 -32.83 -37.32 REMARK 500 4 ARG A 110 -73.93 -70.36 REMARK 500 4 THR A 125 149.51 -39.54 REMARK 500 4 ARG A 134 96.07 -32.78 REMARK 500 5 SER A 3 -44.20 -131.44 REMARK 500 5 MET A 8 126.60 -37.47 REMARK 500 5 HIS A 28 -177.12 -51.25 REMARK 500 5 VAL A 37 -38.18 -33.95 REMARK 500 5 GLN A 72 40.32 38.99 REMARK 500 5 PHE A 93 -62.94 -92.70 REMARK 500 5 ARG A 96 96.96 -57.55 REMARK 500 5 LEU A 100 -179.45 -54.85 REMARK 500 5 PRO A 126 0.76 -69.78 REMARK 500 5 PHE A 136 155.29 -49.82 REMARK 500 5 SER A 138 106.50 -51.24 REMARK 500 6 GLU A 9 157.00 -48.36 REMARK 500 6 HIS A 28 -178.67 -51.28 REMARK 500 6 SER A 34 31.94 -92.76 REMARK 500 6 PHE A 93 -64.66 -92.71 REMARK 500 REMARK 500 THIS ENTRY HAS 182 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2D86 A 8 137 UNP Q9UKW4 VAV3_HUMAN 1 130 SEQADV 2D86 GLY A 1 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 2 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 3 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 4 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 5 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 6 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 7 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 138 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 139 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 PRO A 140 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 141 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 SER A 142 UNP Q9UKW4 CLONING ARTIFACT SEQADV 2D86 GLY A 143 UNP Q9UKW4 CLONING ARTIFACT SEQRES 1 A 143 GLY SER SER GLY SER SER GLY MET GLU PRO TRP LYS GLN SEQRES 2 A 143 CYS ALA GLN TRP LEU ILE HIS CYS LYS VAL LEU PRO THR SEQRES 3 A 143 ASN HIS ARG VAL THR TRP ASP SER ALA GLN VAL PHE ASP SEQRES 4 A 143 LEU ALA GLN THR LEU ARG ASP GLY VAL LEU LEU CYS GLN SEQRES 5 A 143 LEU LEU ASN ASN LEU ARG ALA HIS SER ILE ASN LEU LYS SEQRES 6 A 143 GLU ILE ASN LEU ARG PRO GLN MET SER GLN PHE LEU CYS SEQRES 7 A 143 LEU LYS ASN ILE ARG THR PHE LEU THR ALA CYS CYS GLU SEQRES 8 A 143 THR PHE GLY MET ARG LYS SER GLU LEU PHE GLU ALA PHE SEQRES 9 A 143 ASP LEU PHE ASP VAL ARG ASP PHE GLY LYS VAL ILE GLU SEQRES 10 A 143 THR LEU SER ARG LEU SER ARG THR PRO ILE ALA LEU ALA SEQRES 11 A 143 THR GLY ILE ARG PRO PHE PRO SER GLY PRO SER SER GLY HELIX 1 1 GLU A 9 CYS A 21 1 13 HELIX 2 2 GLN A 36 ASP A 46 1 11 HELIX 3 3 GLY A 47 ARG A 58 1 12 HELIX 4 4 ASN A 63 ILE A 67 5 5 HELIX 5 5 SER A 74 THR A 92 1 19 HELIX 6 6 GLU A 102 ASP A 108 1 7 HELIX 7 7 PHE A 112 SER A 123 1 12 HELIX 8 8 ILE A 127 GLY A 132 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1