data_2D8I # _entry.id 2D8I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D8I pdb_00002d8i 10.2210/pdb2d8i/pdb RCSB RCSB025119 ? ? WWPDB D_1000025119 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003000753.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D8I _pdbx_database_status.recvd_initial_deposition_date 2005-12-06 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qin, X.R.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the PDZ domain of T-cell lymphoma invasion and metastasis 1 varian' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qin, X.R.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _cell.entry_id 2D8I _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D8I _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'T-cell lymphoma invasion and metastasis 1 variant' _entity.formula_weight 12048.287 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'PDZ domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN SSMLKDFLSQPSLGLLVRTYPELEEGVESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGEIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALN SSMLKDFLSQPSLGLLVRTYPELEEGVESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003000753.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLU n 1 9 ILE n 1 10 GLU n 1 11 ILE n 1 12 CYS n 1 13 PRO n 1 14 LYS n 1 15 VAL n 1 16 THR n 1 17 GLN n 1 18 SER n 1 19 ILE n 1 20 HIS n 1 21 ILE n 1 22 GLU n 1 23 LYS n 1 24 SER n 1 25 ASP n 1 26 THR n 1 27 ALA n 1 28 ALA n 1 29 ASP n 1 30 THR n 1 31 TYR n 1 32 GLY n 1 33 PHE n 1 34 SER n 1 35 LEU n 1 36 SER n 1 37 SER n 1 38 VAL n 1 39 GLU n 1 40 GLU n 1 41 ASP n 1 42 GLY n 1 43 ILE n 1 44 ARG n 1 45 ARG n 1 46 LEU n 1 47 TYR n 1 48 VAL n 1 49 ASN n 1 50 SER n 1 51 VAL n 1 52 LYS n 1 53 GLU n 1 54 THR n 1 55 GLY n 1 56 LEU n 1 57 ALA n 1 58 SER n 1 59 LYS n 1 60 LYS n 1 61 GLY n 1 62 LEU n 1 63 LYS n 1 64 ALA n 1 65 GLY n 1 66 ASP n 1 67 GLU n 1 68 ILE n 1 69 LEU n 1 70 GLU n 1 71 ILE n 1 72 ASN n 1 73 ASN n 1 74 ARG n 1 75 ALA n 1 76 ALA n 1 77 ASP n 1 78 ALA n 1 79 LEU n 1 80 ASN n 1 81 SER n 1 82 SER n 1 83 MET n 1 84 LEU n 1 85 LYS n 1 86 ASP n 1 87 PHE n 1 88 LEU n 1 89 SER n 1 90 GLN n 1 91 PRO n 1 92 SER n 1 93 LEU n 1 94 GLY n 1 95 LEU n 1 96 LEU n 1 97 VAL n 1 98 ARG n 1 99 THR n 1 100 TYR n 1 101 PRO n 1 102 GLU n 1 103 LEU n 1 104 GLU n 1 105 GLU n 1 106 GLY n 1 107 VAL n 1 108 GLU n 1 109 SER n 1 110 GLY n 1 111 PRO n 1 112 SER n 1 113 SER n 1 114 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene T1AM-1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050425-07 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code BAD92338 _struct_ref.pdbx_db_accession 62087782 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EIEICPKVTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDF LSQPSLGLLVRTYPELEEGVE ; _struct_ref.pdbx_align_begin 664 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2D8I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 108 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 62087782 _struct_ref_seq.db_align_beg 664 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 764 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 108 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D8I GLY A 1 ? GB 62087782 ? ? 'cloning artifact' 1 1 1 2D8I SER A 2 ? GB 62087782 ? ? 'cloning artifact' 2 2 1 2D8I SER A 3 ? GB 62087782 ? ? 'cloning artifact' 3 3 1 2D8I GLY A 4 ? GB 62087782 ? ? 'cloning artifact' 4 4 1 2D8I SER A 5 ? GB 62087782 ? ? 'cloning artifact' 5 5 1 2D8I SER A 6 ? GB 62087782 ? ? 'cloning artifact' 6 6 1 2D8I GLY A 7 ? GB 62087782 ? ? 'cloning artifact' 7 7 1 2D8I SER A 109 ? GB 62087782 ? ? 'cloning artifact' 109 8 1 2D8I GLY A 110 ? GB 62087782 ? ? 'cloning artifact' 110 9 1 2D8I PRO A 111 ? GB 62087782 ? ? 'cloning artifact' 111 10 1 2D8I SER A 112 ? GB 62087782 ? ? 'cloning artifact' 112 11 1 2D8I SER A 113 ? GB 62087782 ? ? 'cloning artifact' 113 12 1 2D8I GLY A 114 ? GB 62087782 ? ? 'cloning artifact' 114 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.29mM 13C,15N-labeled protein; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3;' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2D8I _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2D8I _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function,structures with the lowest energy,structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D8I _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9296 'Kobayashi, N' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2D8I _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D8I _struct.title 'Solution structure of the PDZ domain of T-cell lymphoma invasion and metastasis 1 varian' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D8I _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM, SIGNALING PROTEIN' _struct_keywords.text ;PDZ domain, T-cell lymphoma invasion and metastasis 1 variant, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, IMMUNE SYSTEM, SIGNALING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 56 ? GLY A 61 ? LEU A 56 GLY A 61 1 ? 6 HELX_P HELX_P2 2 ALA A 75 ? LEU A 79 ? ALA A 75 LEU A 79 5 ? 5 HELX_P HELX_P3 3 ASN A 80 ? SER A 89 ? ASN A 80 SER A 89 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 15 ? GLU A 22 ? VAL A 15 GLU A 22 A 2 SER A 92 ? THR A 99 ? SER A 92 THR A 99 A 3 ILE A 68 ? ILE A 71 ? ILE A 68 ILE A 71 B 1 SER A 34 ? GLU A 40 ? SER A 34 GLU A 40 B 2 ILE A 43 ? SER A 50 ? ILE A 43 SER A 50 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 15 ? N VAL A 15 O THR A 99 ? O THR A 99 A 2 3 O LEU A 96 ? O LEU A 96 N LEU A 69 ? N LEU A 69 B 1 2 N VAL A 38 ? N VAL A 38 O ARG A 45 ? O ARG A 45 # _database_PDB_matrix.entry_id 2D8I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D8I _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ILE 11 11 11 ILE ILE A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 HIS 20 20 20 HIS HIS A . n A 1 21 ILE 21 21 21 ILE ILE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 GLY 32 32 32 GLY GLY A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ASP 41 41 41 ASP ASP A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ARG 44 44 44 ARG ARG A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 TYR 47 47 47 TYR TYR A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 GLU 70 70 70 GLU GLU A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 ASN 72 72 72 ASN ASN A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 ALA 76 76 76 ALA ALA A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 LEU 79 79 79 LEU LEU A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 MET 83 83 83 MET MET A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 GLN 90 90 90 GLN GLN A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 TYR 100 100 100 TYR TYR A . n A 1 101 PRO 101 101 101 PRO PRO A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 GLU 105 105 105 GLU GLU A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 VAL 107 107 107 VAL VAL A . n A 1 108 GLU 108 108 108 GLU GLU A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 PRO 111 111 111 PRO PRO A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 SER 113 113 113 SER SER A . n A 1 114 GLY 114 114 114 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-06-06 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 3 ? ? 36.54 43.03 2 1 SER A 6 ? ? -91.28 55.23 3 1 PRO A 13 ? ? -69.75 -178.58 4 1 ALA A 28 ? ? -130.30 -59.74 5 1 ASP A 29 ? ? -68.21 96.72 6 1 TYR A 31 ? ? -42.66 162.34 7 1 LYS A 60 ? ? -60.67 -71.85 8 1 ALA A 64 ? ? -60.61 98.25 9 1 ASN A 73 ? ? 71.27 37.52 10 1 SER A 112 ? ? -49.16 95.13 11 2 SER A 6 ? ? -96.72 42.50 12 2 PRO A 13 ? ? -69.76 -178.51 13 2 LYS A 14 ? ? -54.82 171.15 14 2 ALA A 28 ? ? -127.85 -70.97 15 2 TYR A 31 ? ? -53.92 -176.83 16 2 THR A 54 ? ? -104.43 63.90 17 2 ALA A 57 ? ? -34.00 -72.53 18 2 ASP A 66 ? ? -46.74 173.90 19 2 ASN A 73 ? ? 72.94 34.36 20 2 GLU A 108 ? ? 39.64 29.90 21 3 PRO A 13 ? ? -69.74 -174.74 22 3 ASP A 25 ? ? 74.89 55.04 23 3 THR A 26 ? ? -35.76 -30.71 24 3 ALA A 27 ? ? -33.87 -39.88 25 3 ALA A 28 ? ? -121.21 -64.82 26 3 TYR A 31 ? ? -43.72 151.07 27 3 ALA A 57 ? ? -33.52 -36.41 28 3 ALA A 64 ? ? -62.76 90.61 29 3 ASN A 73 ? ? 71.65 40.49 30 3 LEU A 103 ? ? -85.87 46.28 31 4 PRO A 13 ? ? -69.75 -170.16 32 4 THR A 26 ? ? -123.30 -73.45 33 4 TYR A 31 ? ? -44.53 169.19 34 4 ALA A 57 ? ? -36.48 -74.57 35 4 LEU A 62 ? ? -45.40 160.57 36 4 LYS A 63 ? ? -171.76 148.16 37 4 ALA A 64 ? ? -54.62 104.54 38 5 SER A 3 ? ? -86.25 43.38 39 5 SER A 5 ? ? -47.81 97.50 40 5 ALA A 28 ? ? -106.95 -61.37 41 5 TYR A 31 ? ? -37.54 150.28 42 5 SER A 89 ? ? -91.15 36.26 43 5 GLU A 104 ? ? -102.80 40.35 44 5 VAL A 107 ? ? -53.56 107.71 45 5 SER A 112 ? ? -58.72 100.06 46 6 CYS A 12 ? ? -37.43 136.68 47 6 PRO A 13 ? ? -69.79 -164.34 48 6 LYS A 14 ? ? -38.12 152.56 49 6 TYR A 31 ? ? -34.43 -71.74 50 6 ASN A 73 ? ? 72.67 31.02 51 6 GLU A 104 ? ? 35.03 39.81 52 6 GLU A 105 ? ? -59.14 173.74 53 6 PRO A 111 ? ? -69.82 99.26 54 7 ILE A 9 ? ? 35.87 40.20 55 7 PRO A 13 ? ? -69.77 -170.00 56 7 LYS A 14 ? ? -50.88 -178.55 57 7 ALA A 27 ? ? -86.30 -71.10 58 7 TYR A 31 ? ? -44.73 167.91 59 8 PRO A 13 ? ? -69.77 -179.63 60 8 LYS A 14 ? ? -53.76 170.18 61 8 ALA A 28 ? ? -107.81 -64.94 62 8 TYR A 31 ? ? -42.70 162.03 63 8 THR A 54 ? ? -113.95 65.23 64 8 LYS A 63 ? ? -174.99 147.33 65 8 ALA A 64 ? ? -55.05 92.25 66 8 ASN A 73 ? ? 70.28 35.10 67 8 SER A 82 ? ? -43.09 -70.36 68 8 SER A 89 ? ? -87.46 30.79 69 8 LEU A 103 ? ? -80.64 44.67 70 8 GLU A 104 ? ? -170.73 110.03 71 8 VAL A 107 ? ? -51.86 172.35 72 9 PRO A 13 ? ? -69.76 -167.50 73 9 LYS A 14 ? ? -51.98 178.00 74 9 THR A 54 ? ? 30.24 38.80 75 9 ALA A 57 ? ? -48.50 -71.82 76 9 LEU A 62 ? ? -41.79 154.74 77 9 ALA A 64 ? ? -51.72 94.47 78 9 ASN A 73 ? ? 72.28 39.54 79 9 SER A 82 ? ? -41.25 -70.28 80 9 GLU A 104 ? ? 70.59 52.63 81 9 SER A 113 ? ? 38.60 41.27 82 10 PRO A 13 ? ? -69.78 88.48 83 10 TYR A 31 ? ? -45.19 165.50 84 10 LEU A 56 ? ? -102.17 -70.98 85 10 ASN A 73 ? ? 72.79 43.69 86 10 SER A 81 ? ? -39.42 -33.84 87 10 GLU A 104 ? ? -170.24 120.15 88 11 SER A 2 ? ? -168.50 112.78 89 11 GLU A 10 ? ? -50.02 176.34 90 11 PRO A 13 ? ? -69.79 88.97 91 11 LYS A 14 ? ? -46.39 160.88 92 11 ALA A 27 ? ? -39.62 -33.72 93 11 ALA A 28 ? ? -119.69 -72.12 94 11 VAL A 48 ? ? -62.33 99.93 95 11 GLU A 53 ? ? -54.30 -74.64 96 11 ALA A 64 ? ? -61.86 93.22 97 11 ASN A 73 ? ? 71.02 30.33 98 11 PRO A 101 ? ? -69.71 -179.96 99 11 LEU A 103 ? ? -92.52 40.54 100 11 GLU A 104 ? ? -109.25 54.21 101 12 PRO A 13 ? ? -69.82 -169.76 102 12 TYR A 31 ? ? -52.15 -174.93 103 12 GLU A 53 ? ? -34.30 -74.50 104 12 LEU A 62 ? ? -47.04 150.44 105 12 LYS A 63 ? ? -174.83 147.07 106 12 ALA A 64 ? ? -44.21 106.95 107 12 GLU A 104 ? ? 39.33 43.82 108 12 SER A 112 ? ? -36.33 120.33 109 13 SER A 2 ? ? -38.55 -28.47 110 13 PRO A 13 ? ? -69.78 -169.82 111 13 ASP A 29 ? ? -58.30 103.75 112 13 TYR A 31 ? ? -39.14 -74.50 113 13 THR A 54 ? ? 38.48 41.74 114 13 LEU A 62 ? ? -38.84 152.99 115 13 ASN A 73 ? ? 73.52 35.71 116 13 LEU A 103 ? ? -93.75 41.61 117 13 GLU A 108 ? ? -173.79 148.02 118 13 SER A 113 ? ? -35.54 133.16 119 14 SER A 2 ? ? -67.61 85.11 120 14 PRO A 13 ? ? -69.81 -176.09 121 14 ALA A 28 ? ? -49.60 -73.16 122 14 TYR A 31 ? ? -53.93 -179.93 123 14 LYS A 52 ? ? -52.79 173.68 124 14 ASP A 66 ? ? -38.68 136.49 125 14 SER A 89 ? ? -92.62 32.14 126 14 PRO A 101 ? ? -69.81 -176.81 127 14 LEU A 103 ? ? -89.19 31.37 128 14 GLU A 104 ? ? -93.02 54.00 129 15 SER A 3 ? ? -160.81 105.80 130 15 GLU A 8 ? ? -172.33 124.25 131 15 PRO A 13 ? ? -69.76 -176.06 132 15 SER A 24 ? ? -93.27 -74.32 133 15 ALA A 28 ? ? -107.86 -62.10 134 15 TYR A 31 ? ? -38.20 -74.40 135 15 GLU A 53 ? ? -52.22 -72.41 136 15 THR A 54 ? ? -104.59 61.52 137 15 LEU A 62 ? ? -45.69 158.77 138 15 PRO A 111 ? ? -69.79 87.37 139 15 SER A 112 ? ? -38.84 130.69 140 16 PRO A 13 ? ? -69.69 -167.76 141 16 THR A 54 ? ? 30.76 37.69 142 16 ALA A 64 ? ? -66.27 93.58 143 16 SER A 89 ? ? -88.33 33.14 144 16 PRO A 111 ? ? -69.71 89.81 145 17 PRO A 13 ? ? -69.78 -166.07 146 17 LYS A 14 ? ? -45.04 167.65 147 17 ALA A 28 ? ? -101.04 -72.77 148 17 ALA A 57 ? ? -36.89 -71.24 149 17 LEU A 62 ? ? -47.73 161.93 150 17 LYS A 63 ? ? -170.54 149.15 151 17 ASN A 73 ? ? 72.23 38.00 152 17 LEU A 103 ? ? -82.68 41.91 153 18 THR A 54 ? ? -77.39 49.46 154 18 SER A 81 ? ? -39.60 -36.64 155 18 GLU A 104 ? ? -103.27 54.54 156 18 PRO A 111 ? ? -69.76 89.63 157 18 SER A 113 ? ? -50.79 102.91 158 19 PRO A 13 ? ? -69.74 -177.85 159 19 ALA A 27 ? ? -37.32 -38.80 160 19 ALA A 28 ? ? -121.02 -63.16 161 19 TYR A 31 ? ? -51.21 -174.97 162 19 LYS A 52 ? ? -59.36 175.03 163 19 THR A 54 ? ? 39.56 49.41 164 19 ASN A 73 ? ? 72.70 34.68 165 19 LEU A 103 ? ? -43.48 166.04 166 19 GLU A 104 ? ? -34.99 103.67 167 19 VAL A 107 ? ? -64.01 97.85 168 19 SER A 113 ? ? -127.61 -50.65 169 20 PRO A 13 ? ? -69.66 -178.82 170 20 ALA A 27 ? ? -132.52 -45.31 171 20 GLU A 53 ? ? -48.50 -73.55 172 20 SER A 58 ? ? -59.52 -70.35 173 20 ALA A 64 ? ? -48.13 96.59 174 20 SER A 82 ? ? -55.32 -70.11 175 20 SER A 89 ? ? -94.41 32.45 176 20 GLU A 104 ? ? -108.25 54.85 #