HEADER TRANSCRIPTION 08-DEC-05 2D96 TITLE SOLUTION STRUCTURE OF THE DEATH DOMAIN OF NUCLEAR FACTOR NF-KAPPA-B TITLE 2 P100 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEAR FACTOR NF-KAPPA-B P100 SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEATH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NFKB2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050404-15; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SIX HELIX BUNDLE, PROCESSING, PROTEASOME, SIGNAL TRANSDUCTION, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 2 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2D96 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D96 1 VERSN REVDAT 1 08-DEC-06 2D96 0 JRNL AUTH T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE DEATH DOMAIN OF NUCLEAR FACTOR JRNL TITL 2 NF-KAPPA-B P100 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D96 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025141. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.15MM DEATH DOMAIN U-15N, 13C, REMARK 210 20MM TRISHCL, 100MM NACL, 1MM REMARK 210 DTT, 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20020425, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.901, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 29 100.77 -48.49 REMARK 500 1 LEU A 42 36.76 -95.10 REMARK 500 1 SER A 54 71.35 -119.50 REMARK 500 1 LEU A 82 91.13 -58.90 REMARK 500 1 SER A 108 41.50 72.63 REMARK 500 2 SER A 5 -61.44 -123.67 REMARK 500 2 SER A 6 85.64 -66.76 REMARK 500 2 PRO A 8 1.71 -69.81 REMARK 500 2 ALA A 29 99.69 -48.62 REMARK 500 2 GLN A 30 -32.73 -39.80 REMARK 500 2 VAL A 46 -25.72 -39.09 REMARK 500 2 THR A 48 -34.79 -36.63 REMARK 500 2 SER A 54 63.02 -114.66 REMARK 500 2 SER A 56 -69.27 -93.64 REMARK 500 2 LEU A 77 -39.09 -37.94 REMARK 500 2 LEU A 82 71.26 -69.07 REMARK 500 2 PRO A 99 84.49 -69.77 REMARK 500 2 SER A 107 42.61 37.85 REMARK 500 3 SER A 5 45.84 -91.37 REMARK 500 3 ALA A 29 102.91 -41.63 REMARK 500 3 LEU A 42 40.11 -95.59 REMARK 500 3 LEU A 82 94.39 -53.37 REMARK 500 3 PRO A 92 -179.07 -69.74 REMARK 500 3 ARG A 95 135.12 -35.80 REMARK 500 4 SER A 11 46.10 -79.72 REMARK 500 4 ALA A 29 103.71 -40.87 REMARK 500 4 GLN A 30 -33.29 -39.94 REMARK 500 4 LEU A 42 54.00 -91.71 REMARK 500 5 SER A 6 169.79 -49.13 REMARK 500 5 ALA A 29 112.60 -33.99 REMARK 500 5 GLN A 30 44.99 -78.86 REMARK 500 5 VAL A 46 -19.90 -47.28 REMARK 500 5 SER A 54 77.58 -115.06 REMARK 500 6 PRO A 8 1.84 -69.75 REMARK 500 6 LEU A 12 157.14 -46.33 REMARK 500 6 ALA A 29 111.17 -34.21 REMARK 500 6 LEU A 42 53.28 -111.08 REMARK 500 6 SER A 54 79.60 -119.11 REMARK 500 6 LEU A 98 139.33 -38.78 REMARK 500 6 PRO A 99 97.48 -69.76 REMARK 500 7 SER A 5 148.44 -37.83 REMARK 500 7 LEU A 10 131.08 -37.55 REMARK 500 7 ALA A 29 97.70 -52.31 REMARK 500 7 LEU A 42 50.05 -114.16 REMARK 500 7 THR A 52 -178.07 -62.14 REMARK 500 7 SER A 54 77.44 -115.27 REMARK 500 7 LEU A 82 94.12 -49.31 REMARK 500 7 PRO A 92 -167.29 -69.76 REMARK 500 7 ARG A 95 42.57 35.04 REMARK 500 7 THR A 101 114.42 -162.29 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2D96 A 8 103 UNP Q00653 NFKB2_HUMAN 766 861 SEQADV 2D96 GLY A 1 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 SER A 2 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 SER A 3 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 GLY A 4 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 SER A 5 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 SER A 6 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 GLY A 7 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 SER A 104 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 GLY A 105 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 PRO A 106 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 SER A 107 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 SER A 108 UNP Q00653 CLONING ARTIFACT SEQADV 2D96 GLY A 109 UNP Q00653 CLONING ARTIFACT SEQRES 1 A 109 GLY SER SER GLY SER SER GLY PRO GLY LEU SER LEU GLY SEQRES 2 A 109 ASP THR ALA LEU GLN ASN LEU GLU GLN LEU LEU ASP GLY SEQRES 3 A 109 PRO GLU ALA GLN GLY SER TRP ALA GLU LEU ALA GLU ARG SEQRES 4 A 109 LEU GLY LEU ARG SER LEU VAL ASP THR TYR ARG GLN THR SEQRES 5 A 109 THR SER PRO SER GLY SER LEU LEU ARG SER TYR GLU LEU SEQRES 6 A 109 ALA GLY GLY ASP LEU ALA GLY LEU LEU GLU ALA LEU SER SEQRES 7 A 109 ASP MET GLY LEU GLU GLU GLY VAL ARG LEU LEU ARG GLY SEQRES 8 A 109 PRO GLU THR ARG ASP LYS LEU PRO SER THR GLU VAL SER SEQRES 9 A 109 GLY PRO SER SER GLY HELIX 1 1 GLY A 13 ASP A 25 1 13 HELIX 2 2 SER A 32 GLY A 41 1 10 HELIX 3 3 LEU A 42 GLN A 51 1 10 HELIX 4 4 SER A 54 ALA A 66 1 13 HELIX 5 5 ASP A 69 GLY A 81 1 13 HELIX 6 6 LEU A 82 GLY A 91 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1