data_2D9S # _entry.id 2D9S # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2D9S pdb_00002d9s 10.2210/pdb2d9s/pdb RCSB RCSB025163 ? ? WWPDB D_1000025163 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id mmt008000693.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2D9S _pdbx_database_status.recvd_initial_deposition_date 2005-12-13 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hamada, T.' 1 'Hirota, H.' 2 'Lin, Y.-J.' 3 'Guntert, P.' 4 'Kurosaki, C.' 5 'Izumi, K.' 6 'Yoshida, M.' 7 'Koshiba, S.' 8 'Kigawa, T.' 9 'Yokoyama, S.' 10 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 11 # _citation.id primary _citation.title 'Solution structure of RSGI RUH-049, a UBA domain from mouse cDNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hamada, T.' 1 ? primary 'Lin, Y.-J.' 2 ? primary 'Kurosaki, C.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Hayashi, F.' 7 ? primary 'Muto, Y.' 8 ? primary 'Izumi, K.' 9 ? primary 'Yoshida, M.' 10 ? primary 'Akasaka, R.' 11 ? primary 'Kukimoto, M.' 12 ? primary 'Terada, T.' 13 ? primary 'Shirouzu, M.' 14 ? primary 'Tanaka, A.' 15 ? primary 'Hayashizaki, Y.' 16 ? primary 'Guntert, P.' 17 ? primary 'Yokoyama, S.' 18 ? primary 'Hirota, H.' 19 ? # _cell.entry_id 2D9S _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2D9S _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'CBL E3 ubiquitin protein ligase' _entity.formula_weight 5679.253 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec 6.3.2.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBA domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Signal transduction protein CBL, Proto-oncogene c-CBL, Casitas B-lineage lymphoma proto- oncogene' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGQLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREFSGPSSG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier mmt008000693.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 GLN n 1 9 LEU n 1 10 SER n 1 11 SER n 1 12 GLU n 1 13 ILE n 1 14 GLU n 1 15 ARG n 1 16 LEU n 1 17 MET n 1 18 SER n 1 19 GLN n 1 20 GLY n 1 21 TYR n 1 22 SER n 1 23 TYR n 1 24 GLN n 1 25 ASP n 1 26 ILE n 1 27 GLN n 1 28 LYS n 1 29 ALA n 1 30 LEU n 1 31 VAL n 1 32 ILE n 1 33 ALA n 1 34 HIS n 1 35 ASN n 1 36 ASN n 1 37 ILE n 1 38 GLU n 1 39 MET n 1 40 ALA n 1 41 LYS n 1 42 ASN n 1 43 ILE n 1 44 LEU n 1 45 ARG n 1 46 GLU n 1 47 PHE n 1 48 SER n 1 49 GLY n 1 50 PRO n 1 51 SER n 1 52 SER n 1 53 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'house mouse' _entity_src_gen.gene_src_genus Mus _entity_src_gen.pdbx_gene_src_gene Cbl _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P041108-06 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CBL_MOUSE _struct_ref.pdbx_db_accession P22682 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QLSSEIERLMSQGYSYQDIQKALVIAHNNIEMAKNILREF _struct_ref.pdbx_align_begin 863 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2D9S A 8 ? 47 ? P22682 863 ? 902 ? 8 47 2 1 2D9S B 8 ? 47 ? P22682 863 ? 902 ? 8 47 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2D9S GLY A 1 ? UNP P22682 ? ? 'cloning artifact' 1 1 1 2D9S SER A 2 ? UNP P22682 ? ? 'cloning artifact' 2 2 1 2D9S SER A 3 ? UNP P22682 ? ? 'cloning artifact' 3 3 1 2D9S GLY A 4 ? UNP P22682 ? ? 'cloning artifact' 4 4 1 2D9S SER A 5 ? UNP P22682 ? ? 'cloning artifact' 5 5 1 2D9S SER A 6 ? UNP P22682 ? ? 'cloning artifact' 6 6 1 2D9S GLY A 7 ? UNP P22682 ? ? 'cloning artifact' 7 7 1 2D9S SER A 48 ? UNP P22682 ? ? 'cloning artifact' 48 8 1 2D9S GLY A 49 ? UNP P22682 ? ? 'cloning artifact' 49 9 1 2D9S PRO A 50 ? UNP P22682 ? ? 'cloning artifact' 50 10 1 2D9S SER A 51 ? UNP P22682 ? ? 'cloning artifact' 51 11 1 2D9S SER A 52 ? UNP P22682 ? ? 'cloning artifact' 52 12 1 2D9S GLY A 53 ? UNP P22682 ? ? 'cloning artifact' 53 13 2 2D9S GLY B 1 ? UNP P22682 ? ? 'cloning artifact' 1 14 2 2D9S SER B 2 ? UNP P22682 ? ? 'cloning artifact' 2 15 2 2D9S SER B 3 ? UNP P22682 ? ? 'cloning artifact' 3 16 2 2D9S GLY B 4 ? UNP P22682 ? ? 'cloning artifact' 4 17 2 2D9S SER B 5 ? UNP P22682 ? ? 'cloning artifact' 5 18 2 2D9S SER B 6 ? UNP P22682 ? ? 'cloning artifact' 6 19 2 2D9S GLY B 7 ? UNP P22682 ? ? 'cloning artifact' 7 20 2 2D9S SER B 48 ? UNP P22682 ? ? 'cloning artifact' 48 21 2 2D9S GLY B 49 ? UNP P22682 ? ? 'cloning artifact' 49 22 2 2D9S PRO B 50 ? UNP P22682 ? ? 'cloning artifact' 50 23 2 2D9S SER B 51 ? UNP P22682 ? ? 'cloning artifact' 51 24 2 2D9S SER B 52 ? UNP P22682 ? ? 'cloning artifact' 52 25 2 2D9S GLY B 53 ? UNP P22682 ? ? 'cloning artifact' 53 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 3 1 3D_13C_F1-filtered_F3-edited_NOESY 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.8mM UBA domain U-15N, 13C; 20mM d-Tris-HCl buffer (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3' '90% H2O/10% D2O' 2 '1.2mM UBA domain U-15N, 13C; 1.2mM UBA domain; 20mM d-Tris-HCl buffer (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3' '100% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 ECA JEOL 700 ? 2 AVANCE Bruker 800 ? # _pdbx_nmr_refine.entry_id 2D9S _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2D9S _pdbx_nmr_details.text 'This structure was determined using 3D NMR techniques' # _pdbx_nmr_ensemble.entry_id 2D9S _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2D9S _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection 'Delta NMR' 4.3 JEOL 1 collection XwinNMR 2.6 Bruker 2 processing NMRPipe 20031121 'Delaglio, F.' 3 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 4 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 5 'structure solution' CYANA 2.2.1 'Guntert, P. et al.' 6 refinement OPALp 1.4 'Koradi, R., Billeter, M., Guntert, P.' 7 # _exptl.entry_id 2D9S _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2D9S _struct.title 'Solution structure of RSGI RUH-049, a UBA domain from mouse cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2D9S _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;UBA domain, dimer, protein binding, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Ligase ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 9 ? GLY A 20 ? LEU A 9 GLY A 20 1 ? 12 HELX_P HELX_P2 2 SER A 22 ? ALA A 33 ? SER A 22 ALA A 33 1 ? 12 HELX_P HELX_P3 3 ASN A 36 ? SER A 48 ? ASN A 36 SER A 48 1 ? 13 HELX_P HELX_P4 4 LEU B 9 ? GLY B 20 ? LEU B 9 GLY B 20 1 ? 12 HELX_P HELX_P5 5 SER B 22 ? ALA B 33 ? SER B 22 ALA B 33 1 ? 12 HELX_P HELX_P6 6 ASN B 36 ? PHE B 47 ? ASN B 36 PHE B 47 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2D9S _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2D9S _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 GLN 8 8 8 GLN GLN A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 GLU 12 12 12 GLU GLU A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 SER 18 18 18 SER SER A . n A 1 19 GLN 19 19 19 GLN GLN A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 SER 22 22 22 SER SER A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 GLN 27 27 27 GLN GLN A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 MET 39 39 39 MET MET A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLY 53 53 53 GLY GLY A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 GLN 8 8 8 GLN GLN B . n B 1 9 LEU 9 9 9 LEU LEU B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 SER 11 11 11 SER SER B . n B 1 12 GLU 12 12 12 GLU GLU B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 ARG 15 15 15 ARG ARG B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 MET 17 17 17 MET MET B . n B 1 18 SER 18 18 18 SER SER B . n B 1 19 GLN 19 19 19 GLN GLN B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 SER 22 22 22 SER SER B . n B 1 23 TYR 23 23 23 TYR TYR B . n B 1 24 GLN 24 24 24 GLN GLN B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 GLN 27 27 27 GLN GLN B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 ILE 32 32 32 ILE ILE B . n B 1 33 ALA 33 33 33 ALA ALA B . n B 1 34 HIS 34 34 34 HIS HIS B . n B 1 35 ASN 35 35 35 ASN ASN B . n B 1 36 ASN 36 36 36 ASN ASN B . n B 1 37 ILE 37 37 37 ILE ILE B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 MET 39 39 39 MET MET B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 LYS 41 41 41 LYS LYS B . n B 1 42 ASN 42 42 42 ASN ASN B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 PHE 47 47 47 PHE PHE B . n B 1 48 SER 48 48 48 SER SER B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 PRO 50 50 50 PRO PRO B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 GLY 53 53 53 GLY GLY B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-23 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 6 OD2 B ASP 25 ? ? HG B SER 48 ? ? 1.52 2 15 HG B SER 11 ? ? OE1 B GLU 12 ? ? 1.57 3 20 OD2 A ASP 25 ? ? HG A SER 48 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 2 ? ? -13.83 102.40 2 1 ASN B 35 ? ? 69.95 -7.20 3 1 PHE B 47 ? ? -94.31 -60.39 4 1 SER B 51 ? ? -80.74 34.70 5 2 SER B 18 ? ? -66.71 6.32 6 3 SER A 2 ? ? -108.02 58.95 7 3 SER A 52 ? ? -156.17 -26.20 8 3 SER B 3 ? ? -162.80 -159.48 9 3 PHE B 47 ? ? -115.10 -74.39 10 3 SER B 52 ? ? -142.20 -68.89 11 4 ASN A 35 ? ? 88.32 0.58 12 4 LEU A 44 ? ? -73.53 27.88 13 4 PHE A 47 ? ? -119.88 -90.89 14 4 PRO A 50 ? ? -77.88 45.42 15 4 SER B 5 ? ? 57.04 9.19 16 4 ASN B 35 ? ? 83.15 5.62 17 4 LEU B 44 ? ? -73.70 27.32 18 4 ARG B 45 ? ? -141.12 -36.61 19 4 PHE B 47 ? ? -116.83 -75.22 20 5 SER A 2 ? ? -161.86 -77.32 21 5 SER B 2 ? ? -167.34 -6.74 22 6 SER A 2 ? ? 76.99 117.86 23 6 ASN A 35 ? ? 85.09 -3.32 24 6 PHE A 47 ? ? -110.65 -75.83 25 6 ASN B 35 ? ? 57.51 14.25 26 6 GLU B 46 ? ? -137.46 -47.34 27 6 PHE B 47 ? ? -87.87 -80.05 28 7 SER A 5 ? ? -48.24 101.58 29 7 SER A 6 ? ? -51.01 107.95 30 7 PHE A 47 ? ? -103.88 -76.57 31 7 ASN B 35 ? ? 67.26 -2.53 32 8 SER A 2 ? ? -73.48 -82.55 33 8 SER A 52 ? ? -80.86 -120.82 34 8 SER B 5 ? ? -109.87 -65.52 35 8 GLU B 46 ? ? -91.88 -78.66 36 9 PRO A 50 ? ? -78.41 -163.63 37 9 SER A 52 ? ? -148.17 54.50 38 10 PHE B 47 ? ? -92.90 -74.92 39 11 GLN A 8 ? ? -150.53 83.13 40 11 SER A 18 ? ? -66.40 4.95 41 11 GLU A 46 ? ? -77.22 -72.90 42 11 SER B 2 ? ? -119.04 72.88 43 11 PHE B 47 ? ? -123.84 -58.34 44 12 SER A 3 ? ? -144.80 -71.69 45 12 ARG A 45 ? ? -140.59 -0.50 46 12 PHE A 47 ? ? -123.26 -67.53 47 12 LEU B 44 ? ? -76.56 25.46 48 12 GLU B 46 ? ? -132.57 -59.96 49 12 PHE B 47 ? ? -79.19 -73.49 50 13 PHE A 47 ? ? -99.33 -67.48 51 13 SER A 52 ? ? -156.19 -159.69 52 13 SER B 3 ? ? -101.30 -78.18 53 13 PHE B 47 ? ? -114.56 -76.28 54 14 SER A 5 ? ? -171.82 145.50 55 14 SER A 51 ? ? -144.62 37.72 56 14 SER A 52 ? ? -143.57 20.54 57 14 PHE B 47 ? ? -97.77 -67.71 58 14 SER B 48 ? ? -63.86 -178.79 59 14 SER B 52 ? ? -156.78 78.06 60 15 SER A 3 ? ? -67.01 95.98 61 15 ASN A 35 ? ? 59.23 18.73 62 15 PHE A 47 ? ? -109.96 -61.61 63 15 LEU B 30 ? ? -67.88 2.19 64 15 ASN B 35 ? ? 59.69 11.38 65 16 PHE A 47 ? ? -102.49 -69.85 66 16 SER A 48 ? ? -69.51 -177.79 67 16 ASN B 35 ? ? 59.49 16.35 68 16 LEU B 44 ? ? -66.87 2.37 69 16 PHE B 47 ? ? -134.75 -69.30 70 16 SER B 48 ? ? -73.96 -119.49 71 16 SER B 52 ? ? -138.56 -155.59 72 17 PRO A 50 ? ? -66.29 98.74 73 17 SER B 52 ? ? -50.78 109.56 74 18 SER A 18 ? ? -60.14 1.11 75 19 SER A 5 ? ? -146.62 -59.90 76 20 SER A 52 ? ? 70.86 140.91 77 20 SER B 5 ? ? -68.62 2.21 78 20 ARG B 45 ? ? -96.48 -66.07 79 20 PHE B 47 ? ? -134.88 -58.86 80 20 PRO B 50 ? ? -75.09 -156.56 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG B 45 ? ? 0.078 'SIDE CHAIN' 2 5 TYR A 21 ? ? 0.076 'SIDE CHAIN' 3 5 TYR B 21 ? ? 0.088 'SIDE CHAIN' 4 6 ARG A 45 ? ? 0.076 'SIDE CHAIN' 5 7 ARG B 45 ? ? 0.125 'SIDE CHAIN' 6 9 ARG B 15 ? ? 0.091 'SIDE CHAIN' 7 10 ARG B 15 ? ? 0.079 'SIDE CHAIN' 8 11 TYR B 21 ? ? 0.073 'SIDE CHAIN' 9 12 TYR A 21 ? ? 0.073 'SIDE CHAIN' 10 12 ARG B 15 ? ? 0.089 'SIDE CHAIN' 11 12 TYR B 21 ? ? 0.074 'SIDE CHAIN' 12 12 ARG B 45 ? ? 0.090 'SIDE CHAIN' 13 15 ARG B 45 ? ? 0.087 'SIDE CHAIN' 14 18 ARG A 15 ? ? 0.094 'SIDE CHAIN' #