HEADER LIGASE 13-DEC-05 2D9S TITLE SOLUTION STRUCTURE OF RSGI RUH-049, A UBA DOMAIN FROM MOUSE CDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CBL E3 UBIQUITIN PROTEIN LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UBA DOMAIN; COMPND 5 SYNONYM: SIGNAL TRANSDUCTION PROTEIN CBL, PROTO-ONCOGENE C-CBL, COMPND 6 CASITAS B-LINEAGE LYMPHOMA PROTO- ONCOGENE; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CBL; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P041108-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS UBA DOMAIN, DIMER, PROTEIN BINDING, STRUCTURAL GENOMICS, NPPSFA, KEYWDS 2 NATIONAL PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, LIGASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.HAMADA,H.HIROTA,Y.-J.LIN,P.GUNTERT,C.KUROSAKI,K.IZUMI,M.YOSHIDA, AUTHOR 2 S.KOSHIBA,T.KIGAWA,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2D9S 1 REMARK SEQADV REVDAT 2 24-FEB-09 2D9S 1 VERSN REVDAT 1 23-JAN-07 2D9S 0 JRNL AUTH T.HAMADA,Y.-J.LIN,C.KUROSAKI,S.KOSHIBA,M.INOUE,T.KIGAWA, JRNL AUTH 2 F.HAYASHI,Y.MUTO,K.IZUMI,M.YOSHIDA,R.AKASAKA,M.KUKIMOTO, JRNL AUTH 3 T.TERADA,M.SHIROUZU,A.TANAKA,Y.HAYASHIZAKI,P.GUNTERT, JRNL AUTH 4 S.YOKOYAMA,H.HIROTA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-049, A UBA DOMAIN FROM MOUSE JRNL TITL 2 CDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DELTA NMR 4.3, OPALP 1.4 REMARK 3 AUTHORS : JEOL (DELTA NMR), KORADI, R., BILLETER, M., REMARK 3 GUNTERT, P. (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2D9S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025163. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM UBA DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL BUFFER (PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 1.2MM UBA DOMAIN U-15N, REMARK 210 13C; 1.2MM UBA DOMAIN; 20MM D- REMARK 210 TRIS-HCL BUFFER (PH 7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C_F1-FILTERED_F3-EDITED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : ECA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : JEOL; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE 20031121, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9295, REMARK 210 CYANA 2.2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING 3D NMR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER B 2 102.40 -13.83 REMARK 500 1 ASN B 35 -7.20 69.95 REMARK 500 1 PHE B 47 -60.39 -94.31 REMARK 500 1 SER B 51 34.70 -80.74 REMARK 500 2 SER B 18 6.32 -66.71 REMARK 500 3 SER A 2 58.95 -108.02 REMARK 500 3 SER A 52 -26.20 -156.17 REMARK 500 3 SER B 3 -159.48 -162.80 REMARK 500 3 PHE B 47 -74.39 -115.10 REMARK 500 3 SER B 52 -68.89 -142.20 REMARK 500 4 ASN A 35 0.58 88.32 REMARK 500 4 LEU A 44 27.88 -73.53 REMARK 500 4 PHE A 47 -90.89 -119.88 REMARK 500 4 PRO A 50 45.42 -77.88 REMARK 500 4 SER B 5 9.19 57.04 REMARK 500 4 ASN B 35 5.62 83.15 REMARK 500 4 LEU B 44 27.32 -73.70 REMARK 500 4 ARG B 45 -36.61 -141.12 REMARK 500 4 PHE B 47 -75.22 -116.83 REMARK 500 5 SER A 2 -77.32 -161.86 REMARK 500 5 SER B 2 -6.74 -167.34 REMARK 500 6 SER A 2 117.86 76.99 REMARK 500 6 ASN A 35 -3.32 85.09 REMARK 500 6 PHE A 47 -75.83 -110.65 REMARK 500 6 ASN B 35 14.25 57.51 REMARK 500 6 GLU B 46 -47.34 -137.46 REMARK 500 6 PHE B 47 -80.05 -87.87 REMARK 500 7 SER A 5 101.58 -48.24 REMARK 500 7 SER A 6 107.95 -51.01 REMARK 500 7 PHE A 47 -76.57 -103.88 REMARK 500 7 ASN B 35 -2.53 67.26 REMARK 500 8 SER A 2 -82.55 -73.48 REMARK 500 8 SER A 52 -120.82 -80.86 REMARK 500 8 SER B 5 -65.52 -109.87 REMARK 500 8 GLU B 46 -78.66 -91.88 REMARK 500 9 PRO A 50 -163.63 -78.41 REMARK 500 9 SER A 52 54.50 -148.17 REMARK 500 10 PHE B 47 -74.92 -92.90 REMARK 500 11 GLN A 8 83.13 -150.53 REMARK 500 11 SER A 18 4.95 -66.40 REMARK 500 11 GLU A 46 -72.90 -77.22 REMARK 500 11 SER B 2 72.88 -119.04 REMARK 500 11 PHE B 47 -58.34 -123.84 REMARK 500 12 SER A 3 -71.69 -144.80 REMARK 500 12 ARG A 45 -0.50 -140.59 REMARK 500 12 PHE A 47 -67.53 -123.26 REMARK 500 12 LEU B 44 25.46 -76.56 REMARK 500 12 GLU B 46 -59.96 -132.57 REMARK 500 12 PHE B 47 -73.49 -79.19 REMARK 500 13 PHE A 47 -67.48 -99.33 REMARK 500 REMARK 500 THIS ENTRY HAS 80 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG B 45 0.08 SIDE CHAIN REMARK 500 5 TYR A 21 0.08 SIDE CHAIN REMARK 500 5 TYR B 21 0.09 SIDE CHAIN REMARK 500 6 ARG A 45 0.08 SIDE CHAIN REMARK 500 7 ARG B 45 0.12 SIDE CHAIN REMARK 500 9 ARG B 15 0.09 SIDE CHAIN REMARK 500 10 ARG B 15 0.08 SIDE CHAIN REMARK 500 11 TYR B 21 0.07 SIDE CHAIN REMARK 500 12 TYR A 21 0.07 SIDE CHAIN REMARK 500 12 ARG B 15 0.09 SIDE CHAIN REMARK 500 12 TYR B 21 0.07 SIDE CHAIN REMARK 500 12 ARG B 45 0.09 SIDE CHAIN REMARK 500 15 ARG B 45 0.09 SIDE CHAIN REMARK 500 18 ARG A 15 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT008000693.1 RELATED DB: TARGETDB DBREF 2D9S A 8 47 UNP P22682 CBL_MOUSE 863 902 DBREF 2D9S B 8 47 UNP P22682 CBL_MOUSE 863 902 SEQADV 2D9S GLY A 1 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER A 2 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER A 3 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY A 4 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER A 5 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER A 6 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY A 7 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER A 48 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY A 49 UNP P22682 CLONING ARTIFACT SEQADV 2D9S PRO A 50 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER A 51 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER A 52 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY A 53 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY B 1 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER B 2 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER B 3 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY B 4 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER B 5 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER B 6 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY B 7 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER B 48 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY B 49 UNP P22682 CLONING ARTIFACT SEQADV 2D9S PRO B 50 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER B 51 UNP P22682 CLONING ARTIFACT SEQADV 2D9S SER B 52 UNP P22682 CLONING ARTIFACT SEQADV 2D9S GLY B 53 UNP P22682 CLONING ARTIFACT SEQRES 1 A 53 GLY SER SER GLY SER SER GLY GLN LEU SER SER GLU ILE SEQRES 2 A 53 GLU ARG LEU MET SER GLN GLY TYR SER TYR GLN ASP ILE SEQRES 3 A 53 GLN LYS ALA LEU VAL ILE ALA HIS ASN ASN ILE GLU MET SEQRES 4 A 53 ALA LYS ASN ILE LEU ARG GLU PHE SER GLY PRO SER SER SEQRES 5 A 53 GLY SEQRES 1 B 53 GLY SER SER GLY SER SER GLY GLN LEU SER SER GLU ILE SEQRES 2 B 53 GLU ARG LEU MET SER GLN GLY TYR SER TYR GLN ASP ILE SEQRES 3 B 53 GLN LYS ALA LEU VAL ILE ALA HIS ASN ASN ILE GLU MET SEQRES 4 B 53 ALA LYS ASN ILE LEU ARG GLU PHE SER GLY PRO SER SER SEQRES 5 B 53 GLY HELIX 1 1 LEU A 9 GLY A 20 1 12 HELIX 2 2 SER A 22 ALA A 33 1 12 HELIX 3 3 ASN A 36 SER A 48 1 13 HELIX 4 4 LEU B 9 GLY B 20 1 12 HELIX 5 5 SER B 22 ALA B 33 1 12 HELIX 6 6 ASN B 36 PHE B 47 1 12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1