HEADER TRANSFERASE, SIGNALING PROTEIN 15-DEC-05 2DBJ TITLE SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN PROTO-ONCOGENE TITLE 2 TYROSINE-PROTEIN KINASE MER PRECURSOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE MER PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE III DOMAIN; COMPND 5 SYNONYM: C-MER, RECEPTOR TYROSINE KINASE MERTK; COMPND 6 EC: 2.7.1.112; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MERTK; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050314-04; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS EC 2.7.1.112, C-MER, RECEPTOR TYROSINE KINASE MERTK, FN3 DOMAIN, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, TRANSFERASE, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DBJ 1 REMARK REVDAT 3 09-MAR-22 2DBJ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DBJ 1 VERSN REVDAT 1 19-DEC-06 2DBJ 0 JRNL AUTH M.SATO,N.TOCHIO,S.KOSHIBA,M.INOUE,T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURES OF THE FN3 DOMAIN OF HUMAN JRNL TITL 2 PROTO-ONCOGENE TYROSINE-PROTEIN KINASE MER PRECURSOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DBJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-DEC-05. REMARK 100 THE DEPOSITION ID IS D_1000025219. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM FN3 DOMAIN U-15N,13C; 20MM D REMARK 210 -TRIS HCL; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 49.77 37.33 REMARK 500 1 ILE A 9 91.12 -48.06 REMARK 500 1 PRO A 18 90.35 -69.76 REMARK 500 1 SER A 19 43.29 -78.37 REMARK 500 1 ASP A 34 48.27 -80.66 REMARK 500 1 PRO A 44 5.07 -69.76 REMARK 500 1 THR A 45 82.58 -55.19 REMARK 500 1 GLN A 48 -32.35 -34.79 REMARK 500 1 SER A 79 28.50 45.90 REMARK 500 1 VAL A 85 106.78 -34.20 REMARK 500 1 PRO A 121 -174.46 -69.79 REMARK 500 2 SER A 5 115.92 -160.26 REMARK 500 2 THR A 14 36.37 36.40 REMARK 500 2 PRO A 18 88.57 -69.68 REMARK 500 2 SER A 19 42.73 -80.23 REMARK 500 2 PRO A 44 4.85 -69.70 REMARK 500 2 THR A 45 83.58 -59.29 REMARK 500 2 ALA A 64 102.95 -55.89 REMARK 500 2 ASN A 77 49.86 -97.25 REMARK 500 2 SER A 79 30.63 36.35 REMARK 500 2 ARG A 80 135.45 -173.36 REMARK 500 2 VAL A 85 105.33 -35.57 REMARK 500 2 ALA A 117 164.70 -41.89 REMARK 500 3 SER A 2 115.50 -160.53 REMARK 500 3 PRO A 18 90.00 -69.79 REMARK 500 3 SER A 19 44.00 -78.94 REMARK 500 3 PRO A 44 3.85 -69.81 REMARK 500 3 THR A 45 91.72 -61.30 REMARK 500 3 VAL A 85 103.36 -34.68 REMARK 500 3 ALA A 117 163.05 -43.68 REMARK 500 3 SER A 119 166.39 -48.57 REMARK 500 4 PRO A 18 89.68 -69.72 REMARK 500 4 SER A 19 43.56 -78.98 REMARK 500 4 PRO A 44 4.89 -69.81 REMARK 500 4 ALA A 64 99.96 -63.33 REMARK 500 4 ASN A 77 54.05 -99.16 REMARK 500 4 VAL A 85 112.83 -36.60 REMARK 500 4 PRO A 121 95.81 -69.70 REMARK 500 4 SER A 122 92.68 -57.44 REMARK 500 5 PRO A 18 89.81 -69.75 REMARK 500 5 SER A 19 43.57 -78.95 REMARK 500 5 PRO A 44 5.12 -69.79 REMARK 500 5 LYS A 46 -57.42 -132.27 REMARK 500 5 VAL A 85 98.70 -36.68 REMARK 500 5 ALA A 117 154.97 -40.32 REMARK 500 5 SER A 123 -33.21 -132.66 REMARK 500 6 SER A 3 89.04 -62.02 REMARK 500 6 PRO A 18 90.90 -69.76 REMARK 500 6 SER A 19 43.60 -78.92 REMARK 500 6 ASP A 34 52.39 -94.59 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DBJ A 8 118 UNP Q12866 MERTK_HUMAN 373 483 SEQADV 2DBJ GLY A 1 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ SER A 2 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ SER A 3 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ GLY A 4 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ SER A 5 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ SER A 6 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ GLY A 7 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ SER A 119 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ GLY A 120 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ PRO A 121 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ SER A 122 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ SER A 123 UNP Q12866 CLONING ARTIFACT SEQADV 2DBJ GLY A 124 UNP Q12866 CLONING ARTIFACT SEQRES 1 A 124 GLY SER SER GLY SER SER GLY TRP ILE LEU ALA SER THR SEQRES 2 A 124 THR GLU GLY ALA PRO SER VAL ALA PRO LEU ASN VAL THR SEQRES 3 A 124 VAL PHE LEU ASN GLU SER SER ASP ASN VAL ASP ILE ARG SEQRES 4 A 124 TRP MET LYS PRO PRO THR LYS GLN GLN ASP GLY GLU LEU SEQRES 5 A 124 VAL GLY TYR ARG ILE SER HIS VAL TRP GLN SER ALA GLY SEQRES 6 A 124 ILE SER LYS GLU LEU LEU GLU GLU VAL GLY GLN ASN GLY SEQRES 7 A 124 SER ARG ALA ARG ILE SER VAL GLN VAL HIS ASN ALA THR SEQRES 8 A 124 CYS THR VAL ARG ILE ALA ALA VAL THR ARG GLY GLY VAL SEQRES 9 A 124 GLY PRO PHE SER ASP PRO VAL LYS ILE PHE ILE PRO ALA SEQRES 10 A 124 HIS SER GLY PRO SER SER GLY SHEET 1 A 3 LEU A 23 LEU A 29 0 SHEET 2 A 3 ASN A 35 MET A 41 -1 O MET A 41 N LEU A 23 SHEET 3 A 3 ALA A 81 SER A 84 -1 O ALA A 81 N ILE A 38 SHEET 1 B 3 ILE A 66 GLY A 75 0 SHEET 2 B 3 LEU A 52 SER A 63 -1 N SER A 63 O ILE A 66 SHEET 3 B 3 ILE A 96 THR A 100 -1 O VAL A 99 N GLY A 54 SHEET 1 C 4 ILE A 66 GLY A 75 0 SHEET 2 C 4 LEU A 52 SER A 63 -1 N SER A 63 O ILE A 66 SHEET 3 C 4 THR A 91 VAL A 94 -1 O THR A 91 N GLN A 62 SHEET 4 C 4 VAL A 111 PHE A 114 -1 O ILE A 113 N CYS A 92 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1