data_2DCX # _entry.id 2DCX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DCX pdb_00002dcx 10.2210/pdb2dcx/pdb RCSB RCSB025266 ? ? WWPDB D_1000025266 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2DD6 _pdbx_database_related.details 'Non-acylated peptide analog, K4-S4(1-13)a' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DCX _pdbx_database_status.recvd_initial_deposition_date 2006-01-17 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Shalev, D.E.' 1 'Rotem, S.' 2 'Fish, A.' 3 'Mor, A.' 4 # _citation.id primary _citation.title 'Consequences of N-acylation on structure and membrane binding properties of dermaseptin derivative k4-s4-(1-13)' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 281 _citation.page_first 9432 _citation.page_last 9438 _citation.year 2006 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16407175 _citation.pdbx_database_id_DOI 10.1074/jbc.M513051200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shalev, D.E.' 1 ? primary 'Rotem, S.' 2 ? primary 'Fish, A.' 3 ? primary 'Mor, A.' 4 ? # _cell.entry_id 2DCX _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DCX _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn Dermaseptin-4 1513.973 1 ? M4K 'residues 1-13' ? 2 non-polymer syn '12-AMINO-DODECANOIC ACID' 215.332 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DS IV' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'ALWKTLLKKVLKA(NH2)' _entity_poly.pdbx_seq_one_letter_code_can ALWKTLLKKVLKAX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LEU n 1 3 TRP n 1 4 LYS n 1 5 THR n 1 6 LEU n 1 7 LEU n 1 8 LYS n 1 9 LYS n 1 10 VAL n 1 11 LEU n 1 12 LYS n 1 13 ALA n 1 14 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This is a truncated, mutated sequence of a peptide that occurs naturally in the South American tree frog, Phyllomedusa sauvagei.' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DMS4_PHYSA _struct_ref.pdbx_db_accession P80280 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ALWMTLLKKVLKA _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DCX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 13 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P80280 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 13 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 13 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 2DCX _struct_ref_seq_dif.mon_id LYS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 4 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P80280 _struct_ref_seq_dif.db_mon_id MET _struct_ref_seq_dif.pdbx_seq_db_seq_num 4 _struct_ref_seq_dif.details 'engineered mutation' _struct_ref_seq_dif.pdbx_auth_seq_num 4 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 DOA 'L-peptide linking' . '12-AMINO-DODECANOIC ACID' ? 'C12 H25 N O2' 215.332 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 DQF-COSY 1 2 1 '2D TOCSY' 1 3 1 '2D NOESY' 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '78 mM' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2.2mM peptide; 20:1 molar ratio of DPC-d38 (Cambridge Isotope Laboratories, Inc., USA); 0.02% NaN3' _pdbx_nmr_sample_details.solvent_system '90% of 10% strength PBS solution, 10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DCX _pdbx_nmr_refine.method 'Distance Geometry, Simulated Annealing' _pdbx_nmr_refine.details 'The structures are derived from 241 NOE constraints; 109 intraresidual; 44 i+1; 19 i+2; 39 i+3; 30 long-range.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DCX _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DCX _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.1 Bruker 1 processing XwinNMR 3.1 Bruker 2 'data analysis' Sparky 3 'Goddard and Kneller' 3 'structure solution' X-PLOR 3.856 'Nilges, Kuszewski and Brnger' 4 'data analysis' Procheck ? 'Laskowski, Rullmannn, MacArthur, Kaptein and Thornton' 5 refinement X-PLOR 3.856 'Nilges, Kuszewski and Brnger' 6 # _exptl.entry_id 2DCX _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DCX _struct.title 'NMR solution structure of the Dermaseptin antimicrobial peptide analog NC12-K4S4(1-13)a' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DCX _struct_keywords.pdbx_keywords 'ANTIMICROBIAL PROTEIN' _struct_keywords.text 'alpha-helix, ANTIMICROBIAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DOA . C ? ? ? 1_555 A ALA 1 N ? ? A DOA 0 A ALA 1 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale2 covale both ? A ALA 13 C ? ? ? 1_555 A NH2 14 N ? ? A ALA 13 A NH2 14 1_555 ? ? ? ? ? ? ? 1.147 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id DOA _struct_site.pdbx_auth_seq_id 0 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE DOA A 0' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ALA A 1 ? ALA A 1 . ? 1_555 ? 2 AC1 3 LEU A 2 ? LEU A 2 . ? 1_555 ? 3 AC1 3 TRP A 3 ? TRP A 3 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DCX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DCX _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 TRP 3 3 3 TRP TRP A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 NH2 14 14 14 NH2 NH2 A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DOA _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 0 _pdbx_nonpoly_scheme.auth_seq_num 0 _pdbx_nonpoly_scheme.pdb_mon_id DOA _pdbx_nonpoly_scheme.auth_mon_id DOA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-28 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-11-10 5 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' atom_site 9 5 'Structure model' chem_comp_atom 10 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 7 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 11 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 17 4 'Structure model' '_struct_ref_seq_dif.details' 18 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 19 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 20 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 21 5 'Structure model' '_atom_site.auth_atom_id' 22 5 'Structure model' '_atom_site.label_atom_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A TRP 3 ? ? H A LEU 6 ? ? 1.47 2 1 O A ALA 13 ? ? N A NH2 14 ? ? 1.72 3 2 O A TRP 3 ? ? H A LEU 6 ? ? 1.55 4 3 N A ALA 1 ? ? O A DOA 0 ? ? 2.19 5 4 N A ALA 1 ? ? O A DOA 0 ? ? 2.19 6 5 O A ALA 13 ? ? N A NH2 14 ? ? 0.18 7 5 O A ALA 13 ? ? HN2 A NH2 14 ? ? 1.04 8 5 O A ALA 13 ? ? HN1 A NH2 14 ? ? 1.08 9 5 O A TRP 3 ? ? H A LEU 6 ? ? 1.52 10 6 O A ALA 13 ? ? N A NH2 14 ? ? 1.14 11 6 O A ALA 13 ? ? HN2 A NH2 14 ? ? 1.25 12 8 N A ALA 1 ? ? O A DOA 0 ? ? 2.19 13 9 N A ALA 1 ? ? O A DOA 0 ? ? 2.17 14 10 N A ALA 1 ? ? O A DOA 0 ? ? 2.17 15 13 N A ALA 1 ? ? O A DOA 0 ? ? 2.16 16 15 N A ALA 1 ? ? O A DOA 0 ? ? 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A ALA 13 ? ? O A ALA 13 ? ? 1.086 1.229 -0.143 0.019 N 2 1 C A ALA 13 ? ? N A NH2 14 ? ? 1.147 1.336 -0.189 0.023 Y 3 2 C A ALA 13 ? ? N A NH2 14 ? ? 1.124 1.336 -0.212 0.023 Y 4 8 C A ALA 13 ? ? O A ALA 13 ? ? 1.413 1.229 0.184 0.019 N 5 15 C A ALA 13 ? ? O A ALA 13 ? ? 1.350 1.229 0.121 0.019 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A ALA 13 ? ? C A ALA 13 ? ? N A NH2 14 ? ? 101.02 122.70 -21.68 1.60 Y 2 3 O A ALA 13 ? ? C A ALA 13 ? ? N A NH2 14 ? ? 110.68 122.70 -12.02 1.60 Y 3 5 O A ALA 13 ? ? C A ALA 13 ? ? N A NH2 14 ? ? 1.30 122.70 -121.40 1.60 Y 4 6 N A ALA 13 ? ? CA A ALA 13 ? ? CB A ALA 13 ? ? 100.68 110.10 -9.42 1.40 N 5 6 O A ALA 13 ? ? C A ALA 13 ? ? N A NH2 14 ? ? 50.59 122.70 -72.11 1.60 Y 6 8 CB A ALA 13 ? ? CA A ALA 13 ? ? C A ALA 13 ? ? 133.66 110.10 23.56 1.50 N 7 8 N A ALA 13 ? ? CA A ALA 13 ? ? CB A ALA 13 ? ? 101.20 110.10 -8.90 1.40 N 8 8 N A ALA 13 ? ? CA A ALA 13 ? ? C A ALA 13 ? ? 93.60 111.00 -17.40 2.70 N 9 15 CB A ALA 13 ? ? CA A ALA 13 ? ? C A ALA 13 ? ? 123.06 110.10 12.96 1.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 2 ? ? 89.65 52.72 2 1 TRP A 3 ? ? -134.13 -42.25 3 1 LYS A 9 ? ? 169.06 -18.53 4 1 LYS A 12 ? ? 57.80 96.44 5 2 LEU A 2 ? ? 81.82 59.52 6 2 TRP A 3 ? ? -132.91 -43.40 7 2 LYS A 9 ? ? 167.58 -18.60 8 2 LYS A 12 ? ? 58.56 14.19 9 3 TRP A 3 ? ? -136.36 -45.89 10 3 LYS A 4 ? ? -38.05 -28.16 11 3 LEU A 6 ? ? -39.43 -37.29 12 3 LEU A 7 ? ? -107.67 42.98 13 3 LYS A 9 ? ? 165.48 -19.55 14 4 LEU A 2 ? ? 75.68 57.93 15 4 LYS A 9 ? ? 171.87 -23.45 16 4 LYS A 12 ? ? 68.28 -68.00 17 5 LEU A 2 ? ? 82.06 59.55 18 5 TRP A 3 ? ? -132.74 -43.92 19 5 LYS A 9 ? ? 168.68 -18.80 20 5 LYS A 12 ? ? 62.79 -69.54 21 6 TRP A 3 ? ? -137.00 -43.26 22 6 LYS A 4 ? ? -38.58 -27.40 23 6 LEU A 6 ? ? -37.63 -36.35 24 6 LYS A 9 ? ? 164.23 -29.99 25 6 VAL A 10 ? ? -39.70 -89.16 26 6 LEU A 11 ? ? 172.74 50.05 27 7 LEU A 2 ? ? -111.48 52.77 28 7 LYS A 9 ? ? 174.09 -21.94 29 7 LYS A 12 ? ? 62.58 91.30 30 8 LEU A 2 ? ? 68.78 74.85 31 8 TRP A 3 ? ? -147.58 -38.35 32 8 LYS A 9 ? ? 164.13 -20.56 33 8 LYS A 12 ? ? 48.37 96.94 34 9 LEU A 2 ? ? 76.23 54.03 35 9 LYS A 9 ? ? 170.84 -22.12 36 9 LYS A 12 ? ? 51.12 82.87 37 10 LEU A 2 ? ? 81.08 60.22 38 10 TRP A 3 ? ? -133.76 -41.77 39 10 LYS A 9 ? ? 177.81 -19.13 40 10 LYS A 12 ? ? 62.25 94.21 41 11 LYS A 9 ? ? -179.79 -24.26 42 11 LYS A 12 ? ? 62.03 89.06 43 12 LYS A 8 ? ? -39.90 -35.98 44 12 LYS A 9 ? ? -175.55 23.23 45 12 LYS A 12 ? ? 67.73 -67.74 46 13 LEU A 7 ? ? -84.04 39.18 47 13 LYS A 9 ? ? 174.83 -19.55 48 13 VAL A 10 ? ? -69.33 12.46 49 13 LYS A 12 ? ? 62.42 95.17 50 14 LEU A 2 ? ? 65.52 89.16 51 14 TRP A 3 ? ? -158.13 -34.18 52 14 LEU A 7 ? ? -109.15 46.92 53 14 LYS A 9 ? ? 174.57 -22.32 54 14 LYS A 12 ? ? 67.87 -64.02 55 15 LEU A 2 ? ? 78.64 57.74 56 15 LYS A 8 ? ? -47.47 -19.77 57 15 LYS A 9 ? ? 172.49 -16.33 # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 C A ALA 13 ? ? N A NH2 14 ? ? 1.15 2 2 C A ALA 13 ? ? N A NH2 14 ? ? 1.12 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 DOA N N N N 14 DOA C1 C N N 15 DOA C2 C N N 16 DOA C3 C N N 17 DOA C4 C N N 18 DOA C5 C N N 19 DOA C6 C N N 20 DOA C7 C N N 21 DOA C8 C N N 22 DOA C9 C N N 23 DOA C10 C N N 24 DOA CA2 C N N 25 DOA C C N N 26 DOA O O N N 27 DOA OXT O N N 28 DOA H H N N 29 DOA H2 H N N 30 DOA HA1 H N N 31 DOA HA2 H N N 32 DOA H21 H N N 33 DOA H22 H N N 34 DOA H31 H N N 35 DOA H32 H N N 36 DOA H41 H N N 37 DOA H42 H N N 38 DOA H51 H N N 39 DOA H52 H N N 40 DOA H61 H N N 41 DOA H62 H N N 42 DOA H71 H N N 43 DOA H72 H N N 44 DOA H81 H N N 45 DOA H82 H N N 46 DOA H91 H N N 47 DOA H92 H N N 48 DOA H101 H N N 49 DOA H102 H N N 50 DOA HA21 H N N 51 DOA HA22 H N N 52 DOA HXT H N N 53 LEU N N N N 54 LEU CA C N S 55 LEU C C N N 56 LEU O O N N 57 LEU CB C N N 58 LEU CG C N N 59 LEU CD1 C N N 60 LEU CD2 C N N 61 LEU OXT O N N 62 LEU H H N N 63 LEU H2 H N N 64 LEU HA H N N 65 LEU HB2 H N N 66 LEU HB3 H N N 67 LEU HG H N N 68 LEU HD11 H N N 69 LEU HD12 H N N 70 LEU HD13 H N N 71 LEU HD21 H N N 72 LEU HD22 H N N 73 LEU HD23 H N N 74 LEU HXT H N N 75 LYS N N N N 76 LYS CA C N S 77 LYS C C N N 78 LYS O O N N 79 LYS CB C N N 80 LYS CG C N N 81 LYS CD C N N 82 LYS CE C N N 83 LYS NZ N N N 84 LYS OXT O N N 85 LYS H H N N 86 LYS H2 H N N 87 LYS HA H N N 88 LYS HB2 H N N 89 LYS HB3 H N N 90 LYS HG2 H N N 91 LYS HG3 H N N 92 LYS HD2 H N N 93 LYS HD3 H N N 94 LYS HE2 H N N 95 LYS HE3 H N N 96 LYS HZ1 H N N 97 LYS HZ2 H N N 98 LYS HZ3 H N N 99 LYS HXT H N N 100 MET N N N N 101 MET CA C N S 102 MET C C N N 103 MET O O N N 104 MET CB C N N 105 MET CG C N N 106 MET SD S N N 107 MET CE C N N 108 MET OXT O N N 109 MET H H N N 110 MET H2 H N N 111 MET HA H N N 112 MET HB2 H N N 113 MET HB3 H N N 114 MET HG2 H N N 115 MET HG3 H N N 116 MET HE1 H N N 117 MET HE2 H N N 118 MET HE3 H N N 119 MET HXT H N N 120 NH2 N N N N 121 NH2 HN1 H N N 122 NH2 HN2 H N N 123 THR N N N N 124 THR CA C N S 125 THR C C N N 126 THR O O N N 127 THR CB C N R 128 THR OG1 O N N 129 THR CG2 C N N 130 THR OXT O N N 131 THR H H N N 132 THR H2 H N N 133 THR HA H N N 134 THR HB H N N 135 THR HG1 H N N 136 THR HG21 H N N 137 THR HG22 H N N 138 THR HG23 H N N 139 THR HXT H N N 140 TRP N N N N 141 TRP CA C N S 142 TRP C C N N 143 TRP O O N N 144 TRP CB C N N 145 TRP CG C Y N 146 TRP CD1 C Y N 147 TRP CD2 C Y N 148 TRP NE1 N Y N 149 TRP CE2 C Y N 150 TRP CE3 C Y N 151 TRP CZ2 C Y N 152 TRP CZ3 C Y N 153 TRP CH2 C Y N 154 TRP OXT O N N 155 TRP H H N N 156 TRP H2 H N N 157 TRP HA H N N 158 TRP HB2 H N N 159 TRP HB3 H N N 160 TRP HD1 H N N 161 TRP HE1 H N N 162 TRP HE3 H N N 163 TRP HZ2 H N N 164 TRP HZ3 H N N 165 TRP HH2 H N N 166 TRP HXT H N N 167 VAL N N N N 168 VAL CA C N S 169 VAL C C N N 170 VAL O O N N 171 VAL CB C N N 172 VAL CG1 C N N 173 VAL CG2 C N N 174 VAL OXT O N N 175 VAL H H N N 176 VAL H2 H N N 177 VAL HA H N N 178 VAL HB H N N 179 VAL HG11 H N N 180 VAL HG12 H N N 181 VAL HG13 H N N 182 VAL HG21 H N N 183 VAL HG22 H N N 184 VAL HG23 H N N 185 VAL HXT H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 DOA N C1 sing N N 13 DOA N H sing N N 14 DOA N H2 sing N N 15 DOA C1 C2 sing N N 16 DOA C1 HA1 sing N N 17 DOA C1 HA2 sing N N 18 DOA C2 C3 sing N N 19 DOA C2 H21 sing N N 20 DOA C2 H22 sing N N 21 DOA C3 C4 sing N N 22 DOA C3 H31 sing N N 23 DOA C3 H32 sing N N 24 DOA C4 C5 sing N N 25 DOA C4 H41 sing N N 26 DOA C4 H42 sing N N 27 DOA C5 C6 sing N N 28 DOA C5 H51 sing N N 29 DOA C5 H52 sing N N 30 DOA C6 C7 sing N N 31 DOA C6 H61 sing N N 32 DOA C6 H62 sing N N 33 DOA C7 C8 sing N N 34 DOA C7 H71 sing N N 35 DOA C7 H72 sing N N 36 DOA C8 C9 sing N N 37 DOA C8 H81 sing N N 38 DOA C8 H82 sing N N 39 DOA C9 C10 sing N N 40 DOA C9 H91 sing N N 41 DOA C9 H92 sing N N 42 DOA C10 CA2 sing N N 43 DOA C10 H101 sing N N 44 DOA C10 H102 sing N N 45 DOA CA2 C sing N N 46 DOA CA2 HA21 sing N N 47 DOA CA2 HA22 sing N N 48 DOA C O doub N N 49 DOA C OXT sing N N 50 DOA OXT HXT sing N N 51 LEU N CA sing N N 52 LEU N H sing N N 53 LEU N H2 sing N N 54 LEU CA C sing N N 55 LEU CA CB sing N N 56 LEU CA HA sing N N 57 LEU C O doub N N 58 LEU C OXT sing N N 59 LEU CB CG sing N N 60 LEU CB HB2 sing N N 61 LEU CB HB3 sing N N 62 LEU CG CD1 sing N N 63 LEU CG CD2 sing N N 64 LEU CG HG sing N N 65 LEU CD1 HD11 sing N N 66 LEU CD1 HD12 sing N N 67 LEU CD1 HD13 sing N N 68 LEU CD2 HD21 sing N N 69 LEU CD2 HD22 sing N N 70 LEU CD2 HD23 sing N N 71 LEU OXT HXT sing N N 72 LYS N CA sing N N 73 LYS N H sing N N 74 LYS N H2 sing N N 75 LYS CA C sing N N 76 LYS CA CB sing N N 77 LYS CA HA sing N N 78 LYS C O doub N N 79 LYS C OXT sing N N 80 LYS CB CG sing N N 81 LYS CB HB2 sing N N 82 LYS CB HB3 sing N N 83 LYS CG CD sing N N 84 LYS CG HG2 sing N N 85 LYS CG HG3 sing N N 86 LYS CD CE sing N N 87 LYS CD HD2 sing N N 88 LYS CD HD3 sing N N 89 LYS CE NZ sing N N 90 LYS CE HE2 sing N N 91 LYS CE HE3 sing N N 92 LYS NZ HZ1 sing N N 93 LYS NZ HZ2 sing N N 94 LYS NZ HZ3 sing N N 95 LYS OXT HXT sing N N 96 MET N CA sing N N 97 MET N H sing N N 98 MET N H2 sing N N 99 MET CA C sing N N 100 MET CA CB sing N N 101 MET CA HA sing N N 102 MET C O doub N N 103 MET C OXT sing N N 104 MET CB CG sing N N 105 MET CB HB2 sing N N 106 MET CB HB3 sing N N 107 MET CG SD sing N N 108 MET CG HG2 sing N N 109 MET CG HG3 sing N N 110 MET SD CE sing N N 111 MET CE HE1 sing N N 112 MET CE HE2 sing N N 113 MET CE HE3 sing N N 114 MET OXT HXT sing N N 115 NH2 N HN1 sing N N 116 NH2 N HN2 sing N N 117 THR N CA sing N N 118 THR N H sing N N 119 THR N H2 sing N N 120 THR CA C sing N N 121 THR CA CB sing N N 122 THR CA HA sing N N 123 THR C O doub N N 124 THR C OXT sing N N 125 THR CB OG1 sing N N 126 THR CB CG2 sing N N 127 THR CB HB sing N N 128 THR OG1 HG1 sing N N 129 THR CG2 HG21 sing N N 130 THR CG2 HG22 sing N N 131 THR CG2 HG23 sing N N 132 THR OXT HXT sing N N 133 TRP N CA sing N N 134 TRP N H sing N N 135 TRP N H2 sing N N 136 TRP CA C sing N N 137 TRP CA CB sing N N 138 TRP CA HA sing N N 139 TRP C O doub N N 140 TRP C OXT sing N N 141 TRP CB CG sing N N 142 TRP CB HB2 sing N N 143 TRP CB HB3 sing N N 144 TRP CG CD1 doub Y N 145 TRP CG CD2 sing Y N 146 TRP CD1 NE1 sing Y N 147 TRP CD1 HD1 sing N N 148 TRP CD2 CE2 doub Y N 149 TRP CD2 CE3 sing Y N 150 TRP NE1 CE2 sing Y N 151 TRP NE1 HE1 sing N N 152 TRP CE2 CZ2 sing Y N 153 TRP CE3 CZ3 doub Y N 154 TRP CE3 HE3 sing N N 155 TRP CZ2 CH2 doub Y N 156 TRP CZ2 HZ2 sing N N 157 TRP CZ3 CH2 sing Y N 158 TRP CZ3 HZ3 sing N N 159 TRP CH2 HH2 sing N N 160 TRP OXT HXT sing N N 161 VAL N CA sing N N 162 VAL N H sing N N 163 VAL N H2 sing N N 164 VAL CA C sing N N 165 VAL CA CB sing N N 166 VAL CA HA sing N N 167 VAL C O doub N N 168 VAL C OXT sing N N 169 VAL CB CG1 sing N N 170 VAL CB CG2 sing N N 171 VAL CB HB sing N N 172 VAL CG1 HG11 sing N N 173 VAL CG1 HG12 sing N N 174 VAL CG1 HG13 sing N N 175 VAL CG2 HG21 sing N N 176 VAL CG2 HG22 sing N N 177 VAL CG2 HG23 sing N N 178 VAL OXT HXT sing N N 179 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '12-AMINO-DODECANOIC ACID' _pdbx_entity_nonpoly.comp_id DOA #