data_2DDE # _entry.id 2DDE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DDE pdb_00002dde 10.2210/pdb2dde/pdb RCSB RCSB025283 ? ? WWPDB D_1000025283 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1AJ1 unspecified 'SOLUTION STRUCTURE OF THE LANTIBIOTIC ACTAGARDINE' PDB 1MQX unspecified 'SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN MEOH/H2O MIXTURE' PDB 1MQY unspecified 'SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN IN DPC MICELLES' PDB 1MQZ unspecified 'SOLUTION STRUCTURE OF TYPE B LANTIBIOTICS MERSACIDIN BOUND TO LIPID II IN DPC MICELLES' PDB 1QOW unspecified 'CRYSTAL STRUCTURE OF THE TUPE B LANTIBIOTIC MERSACIDIN' PDB 1W9N unspecified 'SOLUTION STRUCTURE OF THE LANTIBIOTIC EPILANCIN 15X' PDB 1WCO unspecified 'SOLUTION STRUCTURE OF NISIN AND LIPID II COMPLEX' PDB 2KTN unspecified 'SOLUTION STRUCTURE OF LCH-ALPHA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC SYSTEM LICHENICIDIN VK21 A1' PDB 2KTO unspecified 'SOLUTION STRUCTURE OF LCH-BETA PEPTIDE FROM TWO-COMPONENT LANTIBIOTIC LICHENICIDIN VK21 A2' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DDE _pdbx_database_status.recvd_initial_deposition_date 2006-01-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hosoda, K.' 1 'Ohya, M.' 2 'Kohno, T.' 3 'Maeda, T.' 4 'Endo, S.' 5 'Wakamatsu, K.' 6 # _citation.id primary _citation.title 'Structure determination of an immunopotentiator peptide, cinnamycin, complexed with lysophosphatidylethanolamine by 1H-NMR1.' _citation.journal_abbrev J.Biochem. _citation.journal_volume 119 _citation.page_first 226 _citation.page_last 230 _citation.year 1996 _citation.journal_id_ASTM ? _citation.country JP _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 8882709 _citation.pdbx_database_id_DOI 10.1093/oxfordjournals.jbchem.a021226 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hosoda, K.' 1 ? primary 'Ohya, M.' 2 ? primary 'Kohno, T.' 3 ? primary 'Maeda, T.' 4 ? primary 'Endo, S.' 5 ? primary 'Wakamatsu, K.' 6 ? # _cell.entry_id 2DDE _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DDE _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'LANTIBIOTIC CINNAMYCIN' 2067.372 1 ? ? ? ? 2 non-polymer syn '(7S)-4,7-DIHYDROXY-10-OXO-3,5,9-TRIOXA-4-PHOSPHAUNDECAN-1-AMINIUM 4-OXIDE' 258.186 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'LANTHIOPEPTIN, LANTIBIOTIC RO 09- 0198' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'CRQ(DAL)CSFGPF(DBB)FVC(BH2)GN(DBB)K' _entity_poly.pdbx_seq_one_letter_code_can CRQACSFGPFTFVCDGNTK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 CYS n 1 2 ARG n 1 3 GLN n 1 4 DAL n 1 5 CYS n 1 6 SER n 1 7 PHE n 1 8 GLY n 1 9 PRO n 1 10 PHE n 1 11 DBB n 1 12 PHE n 1 13 VAL n 1 14 CYS n 1 15 BH2 n 1 16 GLY n 1 17 ASN n 1 18 DBB n 1 19 LYS n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'STREPTOMYCES GRISEOVERTICILLATUS' _entity_src_nat.pdbx_ncbi_taxonomy_id 68215 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CINA_STRGV _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P29827 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DDE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 19 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P29827 _struct_ref_seq.db_align_beg 60 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 78 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 BH2 'L-peptide linking' n '(3R)-3-hydroxy-L-aspartic acid' ? 'C4 H7 N O5' 149.102 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DAL 'D-peptide linking' . D-ALANINE ? 'C3 H7 N O2' 89.093 DBB 'D-peptide linking' . 'D-ALPHA-AMINOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 LSP non-polymer . '(7S)-4,7-DIHYDROXY-10-OXO-3,5,9-TRIOXA-4-PHOSPHAUNDECAN-1-AMINIUM 4-OXIDE' 1-ACETYL-2-LYSO-SN-GLYCERO-3-PHOSPHOETHANOLAMINE 'C7 H17 N O7 P 1' 258.186 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 DQF-COSY 1 2 1 PE-COSY 1 3 1 '2D NOESY' 1 4 1 ROESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 318 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH ? _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents 1 '10MM CINNAMYCIN-C12-LYSOPE' 2 DMSO-D6 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AMX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 # _pdbx_nmr_refine.entry_id 2DDE _pdbx_nmr_refine.method 'DISTANCE GEOMETRY, SIMULATED ANNEALING' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DDE _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' # _pdbx_nmr_representative.entry_id 2DDE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement 'X-PLOR 3.1' ? BRUNGER 1 'structure solution' XwinNMR ? ? 2 'structure solution' 'DADAS90 2.1' ? ? 3 'structure solution' 'X-PLOR 3.1' ? ? 4 # _exptl.entry_id 2DDE _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DDE _struct.title 'Structure of cinnamycin complexed with lysophosphatidylethanolamine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DDE _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, IMMUNOPOTENTIATOR, ANTIMICROBIAL, ANTITUMOR, LIPID BINDING, PHOSPHATIDYLETHANOLAMINE, LANTHIONINE, THIOESTER' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A CYS 1 SG ? ? ? 1_555 A DBB 18 CB ? ? A CYS 1 A DBB 18 1_555 ? ? ? ? ? ? ? 1.810 ? ? covale2 covale both ? A GLN 3 C ? ? ? 1_555 A DAL 4 N ? ? A GLN 3 A DAL 4 1_555 ? ? ? ? ? ? ? 1.313 ? ? covale3 covale both ? A DAL 4 C ? ? ? 1_555 A CYS 5 N ? ? A DAL 4 A CYS 5 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale4 covale none ? A DAL 4 CB ? ? ? 1_555 A CYS 14 SG ? ? A DAL 4 A CYS 14 1_555 ? ? ? ? ? ? ? 1.812 ? ? covale5 covale one ? A CYS 5 SG ? ? ? 1_555 A DBB 11 CB ? ? A CYS 5 A DBB 11 1_555 ? ? ? ? ? ? ? 1.810 ? ? covale6 covale none ? A SER 6 CB ? ? ? 1_555 A LYS 19 NZ ? ? A SER 6 A LYS 19 1_555 ? ? ? ? ? ? ? 1.491 ? ? covale7 covale both ? A PHE 10 C ? ? ? 1_555 A DBB 11 N ? ? A PHE 10 A DBB 11 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale8 covale both ? A DBB 11 C ? ? ? 1_555 A PHE 12 N ? ? A DBB 11 A PHE 12 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale9 covale both ? A CYS 14 C ? ? ? 1_555 A BH2 15 N ? ? A CYS 14 A BH2 15 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale10 covale both ? A BH2 15 C ? ? ? 1_555 A GLY 16 N ? ? A BH2 15 A GLY 16 1_555 ? ? ? ? ? ? ? 1.307 ? ? covale11 covale both ? A ASN 17 C ? ? ? 1_555 A DBB 18 N ? ? A ASN 17 A DBB 18 1_555 ? ? ? ? ? ? ? 1.305 ? ? covale12 covale both ? A DBB 18 C ? ? ? 1_555 A LYS 19 N ? ? A DBB 18 A LYS 19 1_555 ? ? ? ? ? ? ? 1.304 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A LSP 100 ? 5 'BINDING SITE FOR RESIDUE LSP A 100' AC2 Software ? ? ? ? 1 'BINDING SITE FOR CHAIN A OF LANTIBIOTIC CINNAMYCIN' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 CYS A 5 ? CYS A 5 . ? 1_555 ? 2 AC1 5 GLY A 8 ? GLY A 8 . ? 1_555 ? 3 AC1 5 PRO A 9 ? PRO A 9 . ? 1_555 ? 4 AC1 5 VAL A 13 ? VAL A 13 . ? 1_555 ? 5 AC1 5 BH2 A 15 ? BH2 A 15 . ? 1_555 ? 6 AC2 1 LSP B . ? LSP A 100 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DDE _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DDE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 CYS 1 1 1 CYS CYS A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 DAL 4 4 4 DAL DAL A . n A 1 5 CYS 5 5 5 CYS CYS A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 PHE 10 10 10 PHE PHE A . n A 1 11 DBB 11 11 11 DBB DBB A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 BH2 15 15 15 BH2 BH2 A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 DBB 18 18 18 DBB DBB A . n A 1 19 LYS 19 19 19 LYS LYS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id LSP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 100 _pdbx_nonpoly_scheme.auth_seq_num 100 _pdbx_nonpoly_scheme.pdb_mon_id LSP _pdbx_nonpoly_scheme.auth_mon_id LSP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_molecule_features.prd_id PRD_000195 _pdbx_molecule_features.name Cinnamycin _pdbx_molecule_features.type Polypeptide _pdbx_molecule_features.class Lantibiotic _pdbx_molecule_features.details ;CINNAMYCIN IS A TETRACYCLIC PEPTIDE. POST TRANSLATIONAL MATURATION OF LANTIBIOTICS INVOLVES THE ENZYMIC CONVERSION OF THR AND SER INTO DEHYDRATED AMINO ACIDS AND THE FORMATION OF THIOETHER BONDS WITH CYSTEINE. THE 14-19 BETA-METHYLLANTHIONINE THIOETHER BOND IS OXIDIZED TO A SULFOXIDE. THE THIOETHER BONDS WITH CYSTEINE RESULT IN THREE RING STRUCTURES, CROSSLINK BETWEEN SER AND LYS RESULT IN THE FOURTH RING. THIS IS FOLLOWED BY MEMBRANE TRANSLOCATION AND CLEAVAGE OF THE MODIFIED PRECURSOR. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000195 _pdbx_molecule.asym_id A # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DAL 4 A DAL 4 ? SER 'POST-TRANSLATIONAL MODIFICATION' 2 A DBB 11 A DBB 11 ? THR 'POST-TRANSLATIONAL MODIFICATION' 3 A BH2 15 A BH2 15 ? ASP 'POST-TRANSLATIONAL MODIFICATION' 4 A DBB 18 A DBB 18 ? THR 'POST-TRANSLATIONAL MODIFICATION' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-02-21 2 'Structure model' 1 1 2011-06-14 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 1 4 2012-12-12 6 'Structure model' 1 5 2019-11-06 7 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Atomic model' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Non-polymer description' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' Other 9 6 'Structure model' 'Data collection' 10 6 'Structure model' 'Database references' 11 6 'Structure model' 'Derived calculations' 12 7 'Structure model' 'Atomic model' 13 7 'Structure model' 'Data collection' 14 7 'Structure model' 'Database references' 15 7 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 6 'Structure model' citation 2 6 'Structure model' pdbx_nmr_software 3 6 'Structure model' struct_conn 4 7 'Structure model' atom_site 5 7 'Structure model' chem_comp_atom 6 7 'Structure model' chem_comp_bond 7 7 'Structure model' database_2 8 7 'Structure model' struct_conn 9 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 6 'Structure model' '_citation.country' 2 6 'Structure model' '_citation.journal_abbrev' 3 6 'Structure model' '_citation.journal_id_ASTM' 4 6 'Structure model' '_citation.journal_id_CSD' 5 6 'Structure model' '_citation.page_last' 6 6 'Structure model' '_citation.pdbx_database_id_DOI' 7 6 'Structure model' '_citation.title' 8 6 'Structure model' '_pdbx_nmr_software.name' 9 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 10 7 'Structure model' '_atom_site.Cartn_x' 11 7 'Structure model' '_atom_site.Cartn_y' 12 7 'Structure model' '_atom_site.Cartn_z' 13 7 'Structure model' '_atom_site.auth_atom_id' 14 7 'Structure model' '_atom_site.label_atom_id' 15 7 'Structure model' '_database_2.pdbx_DOI' 16 7 'Structure model' '_database_2.pdbx_database_accession' 17 7 'Structure model' '_struct_conn.pdbx_dist_value' 18 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 21 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 22 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 23 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 24 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 25 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_entry_details.entry_id 2DDE _pdbx_entry_details.compound_details ;CINNAMYCIN IS A GLOBULAR TYPE B LANTIBIOTIC. THE LANTIBIOTICS ARE CHARACTERIZED BY THIOESTER AMINO ACIDS LANTHIONINE AND/OR METHYLLANTHIONINE. HERE, CINNAMYCIN IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HB2 A SER 6 ? ? NZ A LYS 19 ? ? 1.55 2 2 HB3 A SER 6 ? ? NZ A LYS 19 ? ? 1.47 3 4 CB A SER 6 ? ? HZ2 A LYS 19 ? ? 1.45 4 5 HB2 A SER 6 ? ? NZ A LYS 19 ? ? 1.52 5 7 CB A SER 6 ? ? HZ1 A LYS 19 ? ? 1.41 6 7 HB2 A SER 6 ? ? NZ A LYS 19 ? ? 1.58 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 130.56 114.20 16.36 1.10 N 2 1 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 159.10 114.20 44.90 1.10 N 3 2 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 152.49 114.20 38.29 1.10 N 4 3 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 168.29 114.20 54.09 1.10 N 5 3 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 155.57 114.20 41.37 1.10 N 6 4 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 122.89 114.20 8.69 1.10 N 7 4 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 123.62 114.20 9.42 1.10 N 8 5 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 141.49 114.20 27.29 1.10 N 9 5 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 139.55 114.20 25.35 1.10 N 10 6 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 172.03 114.20 57.83 1.10 N 11 6 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 142.86 114.20 28.66 1.10 N 12 7 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 131.11 114.20 16.91 1.10 N 13 7 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 139.50 114.20 25.30 1.10 N 14 8 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 121.63 114.20 7.43 1.10 N 15 8 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 130.17 114.20 15.97 1.10 N 16 9 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 146.66 114.20 32.46 1.10 N 17 9 CA A CYS 5 ? ? CB A CYS 5 ? ? SG A CYS 5 ? ? 125.30 114.20 11.10 1.10 N 18 10 CA A CYS 1 ? ? CB A CYS 1 ? ? SG A CYS 1 ? ? 143.20 114.20 29.00 1.10 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DAL A 4 ? ? -147.47 26.92 2 1 CYS A 5 ? ? 60.77 103.11 3 1 PHE A 10 ? ? -120.24 -74.97 4 1 DBB A 11 ? ? 144.60 32.65 5 1 CYS A 14 ? ? 78.49 79.29 6 2 ARG A 2 ? ? 52.04 -162.82 7 2 DAL A 4 ? ? -147.63 16.52 8 2 CYS A 5 ? ? 50.72 91.50 9 2 PHE A 10 ? ? -100.14 -80.87 10 2 CYS A 14 ? ? 56.62 82.85 11 2 BH2 A 15 ? ? -140.23 20.71 12 2 ASN A 17 ? ? -101.40 73.62 13 2 DBB A 18 ? ? 131.64 40.02 14 3 GLN A 3 ? ? -107.58 40.05 15 3 DAL A 4 ? ? -146.20 46.57 16 3 CYS A 5 ? ? 67.66 99.83 17 3 PHE A 10 ? ? -101.46 -80.56 18 3 CYS A 14 ? ? 73.24 74.16 19 4 DAL A 4 ? ? -147.47 -170.03 20 4 PHE A 10 ? ? -100.00 -83.64 21 4 DBB A 11 ? ? 139.30 31.03 22 4 PHE A 12 ? ? -140.52 12.45 23 5 DAL A 4 ? ? -147.03 49.23 24 5 CYS A 5 ? ? 75.03 84.48 25 5 PHE A 10 ? ? -109.00 -72.65 26 5 CYS A 14 ? ? 77.73 79.36 27 5 DBB A 18 ? ? 122.16 73.05 28 6 DAL A 4 ? ? -146.83 33.99 29 6 CYS A 5 ? ? 75.08 111.82 30 6 CYS A 14 ? ? 53.38 71.72 31 6 DBB A 18 ? ? 108.26 -69.25 32 7 DAL A 4 ? ? -92.61 63.89 33 7 CYS A 5 ? ? 79.33 73.24 34 7 PHE A 10 ? ? -106.64 -86.64 35 7 CYS A 14 ? ? 72.77 125.91 36 7 DBB A 18 ? ? 133.45 56.22 37 8 GLN A 3 ? ? -119.83 60.09 38 8 DAL A 4 ? ? -146.33 27.98 39 8 CYS A 5 ? ? 73.88 91.74 40 8 DBB A 18 ? ? 154.43 99.46 41 9 DAL A 4 ? ? -146.46 38.31 42 9 CYS A 5 ? ? 75.65 111.10 43 9 PHE A 10 ? ? -134.80 -55.58 44 10 ARG A 2 ? ? 57.36 -167.27 45 10 DAL A 4 ? ? -147.04 176.68 46 10 PHE A 10 ? ? -106.05 -90.43 47 10 CYS A 14 ? ? 60.77 147.73 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 2 ? ? 0.277 'SIDE CHAIN' 2 2 ARG A 2 ? ? 0.117 'SIDE CHAIN' 3 3 ARG A 2 ? ? 0.299 'SIDE CHAIN' 4 4 ARG A 2 ? ? 0.188 'SIDE CHAIN' 5 5 ARG A 2 ? ? 0.233 'SIDE CHAIN' 6 6 ARG A 2 ? ? 0.220 'SIDE CHAIN' 7 8 ARG A 2 ? ? 0.194 'SIDE CHAIN' 8 9 ARG A 2 ? ? 0.311 'SIDE CHAIN' 9 10 ARG A 2 ? ? 0.303 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ARG N N N N 1 ARG CA C N S 2 ARG C C N N 3 ARG O O N N 4 ARG CB C N N 5 ARG CG C N N 6 ARG CD C N N 7 ARG NE N N N 8 ARG CZ C N N 9 ARG NH1 N N N 10 ARG NH2 N N N 11 ARG OXT O N N 12 ARG H H N N 13 ARG H2 H N N 14 ARG HA H N N 15 ARG HB2 H N N 16 ARG HB3 H N N 17 ARG HG2 H N N 18 ARG HG3 H N N 19 ARG HD2 H N N 20 ARG HD3 H N N 21 ARG HE H N N 22 ARG HH11 H N N 23 ARG HH12 H N N 24 ARG HH21 H N N 25 ARG HH22 H N N 26 ARG HXT H N N 27 ASN N N N N 28 ASN CA C N S 29 ASN C C N N 30 ASN O O N N 31 ASN CB C N N 32 ASN CG C N N 33 ASN OD1 O N N 34 ASN ND2 N N N 35 ASN OXT O N N 36 ASN H H N N 37 ASN H2 H N N 38 ASN HA H N N 39 ASN HB2 H N N 40 ASN HB3 H N N 41 ASN HD21 H N N 42 ASN HD22 H N N 43 ASN HXT H N N 44 BH2 C C N N 45 BH2 N N N N 46 BH2 O O N N 47 BH2 CA C N S 48 BH2 CB C N R 49 BH2 OB O N N 50 BH2 CG C N N 51 BH2 OD1 O N N 52 BH2 OD2 O N N 53 BH2 HA H N N 54 BH2 HB H N N 55 BH2 H2 H N N 56 BH2 HOB H N N 57 BH2 OXT O N N 58 BH2 H H N N 59 BH2 HOD1 H N N 60 BH2 HXT H N N 61 CYS N N N N 62 CYS CA C N R 63 CYS C C N N 64 CYS O O N N 65 CYS CB C N N 66 CYS SG S N N 67 CYS OXT O N N 68 CYS H H N N 69 CYS H2 H N N 70 CYS HA H N N 71 CYS HB2 H N N 72 CYS HB3 H N N 73 CYS HG H N N 74 CYS HXT H N N 75 DAL N N N N 76 DAL CA C N R 77 DAL CB C N N 78 DAL C C N N 79 DAL O O N N 80 DAL OXT O N N 81 DAL H H N N 82 DAL H2 H N N 83 DAL HA H N N 84 DAL HB1 H N N 85 DAL HB2 H N N 86 DAL HB3 H N N 87 DAL HXT H N N 88 DBB N N N N 89 DBB CA C N R 90 DBB C C N N 91 DBB O O N N 92 DBB CB C N N 93 DBB CG C N N 94 DBB OXT O N N 95 DBB H H N N 96 DBB H2 H N N 97 DBB HA H N N 98 DBB HB2 H N N 99 DBB HB3 H N N 100 DBB HG1 H N N 101 DBB HG2 H N N 102 DBB HG3 H N N 103 DBB HXT H N N 104 GLN N N N N 105 GLN CA C N S 106 GLN C C N N 107 GLN O O N N 108 GLN CB C N N 109 GLN CG C N N 110 GLN CD C N N 111 GLN OE1 O N N 112 GLN NE2 N N N 113 GLN OXT O N N 114 GLN H H N N 115 GLN H2 H N N 116 GLN HA H N N 117 GLN HB2 H N N 118 GLN HB3 H N N 119 GLN HG2 H N N 120 GLN HG3 H N N 121 GLN HE21 H N N 122 GLN HE22 H N N 123 GLN HXT H N N 124 GLY N N N N 125 GLY CA C N N 126 GLY C C N N 127 GLY O O N N 128 GLY OXT O N N 129 GLY H H N N 130 GLY H2 H N N 131 GLY HA2 H N N 132 GLY HA3 H N N 133 GLY HXT H N N 134 LSP N N N N 135 LSP C12 C N N 136 LSP C11 C N N 137 LSP P P N S 138 LSP O12 O N N 139 LSP O14 O N N 140 LSP O11 O N N 141 LSP O13 O N N 142 LSP C1 C N N 143 LSP C2 C N S 144 LSP O21 O N N 145 LSP C3 C N N 146 LSP O31 O N N 147 LSP C31 C N N 148 LSP O32 O N N 149 LSP C32 C N N 150 LSP HN1 H N N 151 LSP HN2 H N N 152 LSP HN3 H N N 153 LSP H121 H N N 154 LSP H122 H N N 155 LSP H111 H N N 156 LSP H112 H N N 157 LSP H14 H N N 158 LSP H11 H N N 159 LSP H12 H N N 160 LSP H2 H N N 161 LSP H21 H N N 162 LSP H31 H N N 163 LSP H32 H N N 164 LSP H321 H N N 165 LSP H322 H N N 166 LSP H323 H N N 167 LYS N N N N 168 LYS CA C N S 169 LYS C C N N 170 LYS O O N N 171 LYS CB C N N 172 LYS CG C N N 173 LYS CD C N N 174 LYS CE C N N 175 LYS NZ N N N 176 LYS OXT O N N 177 LYS H H N N 178 LYS H2 H N N 179 LYS HA H N N 180 LYS HB2 H N N 181 LYS HB3 H N N 182 LYS HG2 H N N 183 LYS HG3 H N N 184 LYS HD2 H N N 185 LYS HD3 H N N 186 LYS HE2 H N N 187 LYS HE3 H N N 188 LYS HZ1 H N N 189 LYS HZ2 H N N 190 LYS HZ3 H N N 191 LYS HXT H N N 192 PHE N N N N 193 PHE CA C N S 194 PHE C C N N 195 PHE O O N N 196 PHE CB C N N 197 PHE CG C Y N 198 PHE CD1 C Y N 199 PHE CD2 C Y N 200 PHE CE1 C Y N 201 PHE CE2 C Y N 202 PHE CZ C Y N 203 PHE OXT O N N 204 PHE H H N N 205 PHE H2 H N N 206 PHE HA H N N 207 PHE HB2 H N N 208 PHE HB3 H N N 209 PHE HD1 H N N 210 PHE HD2 H N N 211 PHE HE1 H N N 212 PHE HE2 H N N 213 PHE HZ H N N 214 PHE HXT H N N 215 PRO N N N N 216 PRO CA C N S 217 PRO C C N N 218 PRO O O N N 219 PRO CB C N N 220 PRO CG C N N 221 PRO CD C N N 222 PRO OXT O N N 223 PRO H H N N 224 PRO HA H N N 225 PRO HB2 H N N 226 PRO HB3 H N N 227 PRO HG2 H N N 228 PRO HG3 H N N 229 PRO HD2 H N N 230 PRO HD3 H N N 231 PRO HXT H N N 232 SER N N N N 233 SER CA C N S 234 SER C C N N 235 SER O O N N 236 SER CB C N N 237 SER OG O N N 238 SER OXT O N N 239 SER H H N N 240 SER H2 H N N 241 SER HA H N N 242 SER HB2 H N N 243 SER HB3 H N N 244 SER HG H N N 245 SER HXT H N N 246 VAL N N N N 247 VAL CA C N S 248 VAL C C N N 249 VAL O O N N 250 VAL CB C N N 251 VAL CG1 C N N 252 VAL CG2 C N N 253 VAL OXT O N N 254 VAL H H N N 255 VAL H2 H N N 256 VAL HA H N N 257 VAL HB H N N 258 VAL HG11 H N N 259 VAL HG12 H N N 260 VAL HG13 H N N 261 VAL HG21 H N N 262 VAL HG22 H N N 263 VAL HG23 H N N 264 VAL HXT H N N 265 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ARG N CA sing N N 1 ARG N H sing N N 2 ARG N H2 sing N N 3 ARG CA C sing N N 4 ARG CA CB sing N N 5 ARG CA HA sing N N 6 ARG C O doub N N 7 ARG C OXT sing N N 8 ARG CB CG sing N N 9 ARG CB HB2 sing N N 10 ARG CB HB3 sing N N 11 ARG CG CD sing N N 12 ARG CG HG2 sing N N 13 ARG CG HG3 sing N N 14 ARG CD NE sing N N 15 ARG CD HD2 sing N N 16 ARG CD HD3 sing N N 17 ARG NE CZ sing N N 18 ARG NE HE sing N N 19 ARG CZ NH1 sing N N 20 ARG CZ NH2 doub N N 21 ARG NH1 HH11 sing N N 22 ARG NH1 HH12 sing N N 23 ARG NH2 HH21 sing N N 24 ARG NH2 HH22 sing N N 25 ARG OXT HXT sing N N 26 ASN N CA sing N N 27 ASN N H sing N N 28 ASN N H2 sing N N 29 ASN CA C sing N N 30 ASN CA CB sing N N 31 ASN CA HA sing N N 32 ASN C O doub N N 33 ASN C OXT sing N N 34 ASN CB CG sing N N 35 ASN CB HB2 sing N N 36 ASN CB HB3 sing N N 37 ASN CG OD1 doub N N 38 ASN CG ND2 sing N N 39 ASN ND2 HD21 sing N N 40 ASN ND2 HD22 sing N N 41 ASN OXT HXT sing N N 42 BH2 C O doub N N 43 BH2 C CA sing N N 44 BH2 C OXT sing N N 45 BH2 N CA sing N N 46 BH2 N H sing N N 47 BH2 CA CB sing N N 48 BH2 CA HA sing N N 49 BH2 CB HB sing N N 50 BH2 CB CG sing N N 51 BH2 OB CB sing N N 52 BH2 CG OD2 doub N N 53 BH2 CG OD1 sing N N 54 BH2 OD1 HOD1 sing N N 55 BH2 H2 N sing N N 56 BH2 HOB OB sing N N 57 BH2 OXT HXT sing N N 58 CYS N CA sing N N 59 CYS N H sing N N 60 CYS N H2 sing N N 61 CYS CA C sing N N 62 CYS CA CB sing N N 63 CYS CA HA sing N N 64 CYS C O doub N N 65 CYS C OXT sing N N 66 CYS CB SG sing N N 67 CYS CB HB2 sing N N 68 CYS CB HB3 sing N N 69 CYS SG HG sing N N 70 CYS OXT HXT sing N N 71 DAL N CA sing N N 72 DAL N H sing N N 73 DAL N H2 sing N N 74 DAL CA CB sing N N 75 DAL CA C sing N N 76 DAL CA HA sing N N 77 DAL CB HB1 sing N N 78 DAL CB HB2 sing N N 79 DAL CB HB3 sing N N 80 DAL C O doub N N 81 DAL C OXT sing N N 82 DAL OXT HXT sing N N 83 DBB N CA sing N N 84 DBB CA C sing N N 85 DBB CA CB sing N N 86 DBB C O doub N N 87 DBB CB CG sing N N 88 DBB C OXT sing N N 89 DBB N H sing N N 90 DBB N H2 sing N N 91 DBB CA HA sing N N 92 DBB CB HB2 sing N N 93 DBB CB HB3 sing N N 94 DBB CG HG1 sing N N 95 DBB CG HG2 sing N N 96 DBB CG HG3 sing N N 97 DBB OXT HXT sing N N 98 GLN N CA sing N N 99 GLN N H sing N N 100 GLN N H2 sing N N 101 GLN CA C sing N N 102 GLN CA CB sing N N 103 GLN CA HA sing N N 104 GLN C O doub N N 105 GLN C OXT sing N N 106 GLN CB CG sing N N 107 GLN CB HB2 sing N N 108 GLN CB HB3 sing N N 109 GLN CG CD sing N N 110 GLN CG HG2 sing N N 111 GLN CG HG3 sing N N 112 GLN CD OE1 doub N N 113 GLN CD NE2 sing N N 114 GLN NE2 HE21 sing N N 115 GLN NE2 HE22 sing N N 116 GLN OXT HXT sing N N 117 GLY N CA sing N N 118 GLY N H sing N N 119 GLY N H2 sing N N 120 GLY CA C sing N N 121 GLY CA HA2 sing N N 122 GLY CA HA3 sing N N 123 GLY C O doub N N 124 GLY C OXT sing N N 125 GLY OXT HXT sing N N 126 LSP N C12 sing N N 127 LSP N HN1 sing N N 128 LSP N HN2 sing N N 129 LSP N HN3 sing N N 130 LSP C12 C11 sing N N 131 LSP C12 H121 sing N N 132 LSP C12 H122 sing N N 133 LSP C11 O13 sing N N 134 LSP C11 H111 sing N N 135 LSP C11 H112 sing N N 136 LSP P O12 doub N N 137 LSP P O14 sing N N 138 LSP P O11 sing N N 139 LSP P O13 sing N N 140 LSP O14 H14 sing N N 141 LSP O11 C1 sing N N 142 LSP C1 C2 sing N N 143 LSP C1 H11 sing N N 144 LSP C1 H12 sing N N 145 LSP C2 O21 sing N N 146 LSP C2 C3 sing N N 147 LSP C2 H2 sing N N 148 LSP O21 H21 sing N N 149 LSP C3 O31 sing N N 150 LSP C3 H31 sing N N 151 LSP C3 H32 sing N N 152 LSP O31 C31 sing N N 153 LSP C31 O32 doub N N 154 LSP C31 C32 sing N N 155 LSP C32 H321 sing N N 156 LSP C32 H322 sing N N 157 LSP C32 H323 sing N N 158 LYS N CA sing N N 159 LYS N H sing N N 160 LYS N H2 sing N N 161 LYS CA C sing N N 162 LYS CA CB sing N N 163 LYS CA HA sing N N 164 LYS C O doub N N 165 LYS C OXT sing N N 166 LYS CB CG sing N N 167 LYS CB HB2 sing N N 168 LYS CB HB3 sing N N 169 LYS CG CD sing N N 170 LYS CG HG2 sing N N 171 LYS CG HG3 sing N N 172 LYS CD CE sing N N 173 LYS CD HD2 sing N N 174 LYS CD HD3 sing N N 175 LYS CE NZ sing N N 176 LYS CE HE2 sing N N 177 LYS CE HE3 sing N N 178 LYS NZ HZ1 sing N N 179 LYS NZ HZ2 sing N N 180 LYS NZ HZ3 sing N N 181 LYS OXT HXT sing N N 182 PHE N CA sing N N 183 PHE N H sing N N 184 PHE N H2 sing N N 185 PHE CA C sing N N 186 PHE CA CB sing N N 187 PHE CA HA sing N N 188 PHE C O doub N N 189 PHE C OXT sing N N 190 PHE CB CG sing N N 191 PHE CB HB2 sing N N 192 PHE CB HB3 sing N N 193 PHE CG CD1 doub Y N 194 PHE CG CD2 sing Y N 195 PHE CD1 CE1 sing Y N 196 PHE CD1 HD1 sing N N 197 PHE CD2 CE2 doub Y N 198 PHE CD2 HD2 sing N N 199 PHE CE1 CZ doub Y N 200 PHE CE1 HE1 sing N N 201 PHE CE2 CZ sing Y N 202 PHE CE2 HE2 sing N N 203 PHE CZ HZ sing N N 204 PHE OXT HXT sing N N 205 PRO N CA sing N N 206 PRO N CD sing N N 207 PRO N H sing N N 208 PRO CA C sing N N 209 PRO CA CB sing N N 210 PRO CA HA sing N N 211 PRO C O doub N N 212 PRO C OXT sing N N 213 PRO CB CG sing N N 214 PRO CB HB2 sing N N 215 PRO CB HB3 sing N N 216 PRO CG CD sing N N 217 PRO CG HG2 sing N N 218 PRO CG HG3 sing N N 219 PRO CD HD2 sing N N 220 PRO CD HD3 sing N N 221 PRO OXT HXT sing N N 222 SER N CA sing N N 223 SER N H sing N N 224 SER N H2 sing N N 225 SER CA C sing N N 226 SER CA CB sing N N 227 SER CA HA sing N N 228 SER C O doub N N 229 SER C OXT sing N N 230 SER CB OG sing N N 231 SER CB HB2 sing N N 232 SER CB HB3 sing N N 233 SER OG HG sing N N 234 SER OXT HXT sing N N 235 VAL N CA sing N N 236 VAL N H sing N N 237 VAL N H2 sing N N 238 VAL CA C sing N N 239 VAL CA CB sing N N 240 VAL CA HA sing N N 241 VAL C O doub N N 242 VAL C OXT sing N N 243 VAL CB CG1 sing N N 244 VAL CB CG2 sing N N 245 VAL CB HB sing N N 246 VAL CG1 HG11 sing N N 247 VAL CG1 HG12 sing N N 248 VAL CG1 HG13 sing N N 249 VAL CG2 HG21 sing N N 250 VAL CG2 HG22 sing N N 251 VAL CG2 HG23 sing N N 252 VAL OXT HXT sing N N 253 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(7S)-4,7-DIHYDROXY-10-OXO-3,5,9-TRIOXA-4-PHOSPHAUNDECAN-1-AMINIUM 4-OXIDE' _pdbx_entity_nonpoly.comp_id LSP #