HEADER SIGNALING PROTEIN 03-FEB-06 2DDU TITLE CRYSTAL STRUCTURE OF THE THIRD REPEAT DOMAIN OF REELIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: REELIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1222-1597; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: CHO-LEC 3.2.8.1; SOURCE 9 EXPRESSION_SYSTEM_CELL: MAMMALIAN CELL KEYWDS BETA-JELLY-ROLL, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.NOGI,N.YASUI,J.TAKAGI REVDAT 5 23-OCT-24 2DDU 1 REMARK SEQADV LINK REVDAT 4 05-OCT-11 2DDU 1 LINK REVDAT 3 13-JUL-11 2DDU 1 VERSN REVDAT 2 24-FEB-09 2DDU 1 VERSN REVDAT 1 26-SEP-06 2DDU 0 JRNL AUTH T.NOGI,N.YASUI,M.HATTORI,K.IWASAKI,J.TAKAGI JRNL TITL STRUCTURE OF A SIGNALING-COMPETENT REELIN FRAGMENT REVEALED JRNL TITL 2 BY X-RAY CRYSTALLOGRAPHY AND ELECTRON TOMOGRAPHY JRNL REF EMBO J. V. 25 3675 2006 JRNL REFN ISSN 0261-4189 JRNL PMID 16858396 JRNL DOI 10.1038/SJ.EMBOJ.7601240 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 23802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1720 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2320 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.33000 REMARK 3 B22 (A**2) : 0.33000 REMARK 3 B33 (A**2) : -0.50000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.116 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.919 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2433 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3304 ; 1.269 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 299 ; 6.570 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;35.660 ;23.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 390 ;16.283 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.883 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 352 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1862 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 992 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1594 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 110 ; 0.153 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.112 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.192 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.091 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1534 ; 0.819 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2403 ; 1.342 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1047 ; 1.845 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 901 ; 2.945 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DDU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-FEB-06. REMARK 100 THE DEPOSITION ID IS D_1000025299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER DIP-6040 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24374 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, MGCL2, TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 64.96600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.50814 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 40.82833 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 64.96600 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 37.50814 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 40.82833 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 64.96600 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 37.50814 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 40.82833 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 64.96600 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 37.50814 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 40.82833 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 64.96600 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 37.50814 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 40.82833 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 64.96600 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 37.50814 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.82833 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 75.01628 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 81.65667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 75.01628 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 81.65667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 75.01628 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 81.65667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 75.01628 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 81.65667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 75.01628 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 81.65667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 75.01628 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 81.65667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 64.96600 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 37.50814 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 40.82833 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 2 LIES ON A SPECIAL POSITION. REMARK 375 MG MG A 3 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1220 REMARK 465 ARG A 1221 REMARK 465 SER A 1222 REMARK 465 GLU A 1223 REMARK 465 LYS A 1224 REMARK 465 GLN A 1225 REMARK 465 LYS A 1226 REMARK 465 GLN A 1227 REMARK 465 VAL A 1228 REMARK 465 ILE A 1229 REMARK 465 PRO A 1230 REMARK 465 VAL A 1231 REMARK 465 VAL A 1232 REMARK 465 ASN A 1233 REMARK 465 PRO A 1234 REMARK 465 THR A 1235 REMARK 465 LEU A 1236 REMARK 465 PRO A 1237 REMARK 465 GLN A 1238 REMARK 465 ASN A 1239 REMARK 465 PHE A 1240 REMARK 465 TYR A 1241 REMARK 465 GLU A 1242 REMARK 465 LYS A 1243 REMARK 465 PRO A 1244 REMARK 465 ALA A 1245 REMARK 465 PHE A 1246 REMARK 465 ASP A 1247 REMARK 465 TYR A 1248 REMARK 465 PRO A 1249 REMARK 465 MET A 1250 REMARK 465 ASN A 1251 REMARK 465 GLN A 1252 REMARK 465 MET A 1253 REMARK 465 SER A 1254 REMARK 465 VAL A 1255 REMARK 465 TRP A 1256 REMARK 465 LEU A 1257 REMARK 465 MET A 1258 REMARK 465 LEU A 1259 REMARK 465 ALA A 1260 REMARK 465 ASN A 1261 REMARK 465 GLU A 1262 REMARK 465 GLY A 1263 REMARK 465 MET A 1264 REMARK 465 ALA A 1265 REMARK 465 LYS A 1266 REMARK 465 ASN A 1267 REMARK 465 ASP A 1268 REMARK 465 SER A 1269 REMARK 465 PHE A 1270 REMARK 465 CYS A 1271 REMARK 465 ALA A 1272 REMARK 465 THR A 1273 REMARK 465 THR A 1274 REMARK 465 PRO A 1275 REMARK 465 SER A 1276 REMARK 465 ALA A 1277 REMARK 465 MET A 1278 REMARK 465 VAL A 1279 REMARK 465 PHE A 1280 REMARK 465 GLY A 1281 REMARK 465 LYS A 1282 REMARK 465 SER A 1283 REMARK 465 ASP A 1284 REMARK 465 GLY A 1285 REMARK 465 ASP A 1286 REMARK 465 ARG A 1287 REMARK 465 PHE A 1288 REMARK 465 ALA A 1289 REMARK 465 VAL A 1290 REMARK 465 THR A 1291 REMARK 465 ARG A 1292 REMARK 465 ASP A 1293 REMARK 465 SER A 1393 REMARK 465 SER A 1394 REMARK 465 SER A 1395 REMARK 465 GLN A 1396 REMARK 465 LYS A 1397 REMARK 465 ASN A 1398 REMARK 465 GLU A 1601 REMARK 465 ASN A 1602 REMARK 465 LEU A 1603 REMARK 465 TYR A 1604 REMARK 465 PHE A 1605 REMARK 465 GLN A 1606 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A1298 -78.73 -36.31 REMARK 500 ALA A1344 66.18 -155.90 REMARK 500 CYS A1348 67.81 -162.72 REMARK 500 SER A1379 -38.58 -27.93 REMARK 500 ALA A1381 40.08 -85.83 REMARK 500 SER A1382 -97.24 -78.71 REMARK 500 ASP A1405 153.26 168.32 REMARK 500 CYS A1417 16.46 58.95 REMARK 500 THR A1440 -166.45 -109.56 REMARK 500 SER A1449 -70.77 -107.06 REMARK 500 THR A1473 13.59 -142.46 REMARK 500 LEU A1478 -78.41 -96.42 REMARK 500 ASN A1479 -67.39 -95.82 REMARK 500 CYS A1522 70.83 -156.46 REMARK 500 ALA A1573 81.23 -153.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 97 O REMARK 620 2 ARG A1454 O 94.2 REMARK 620 3 GLU A1456 OE2 85.8 84.3 REMARK 620 4 ASP A1480 O 80.4 162.4 78.7 REMARK 620 5 ARG A1482 O 173.6 91.9 96.7 94.3 REMARK 620 6 ASP A1593 OD1 88.8 83.1 165.8 113.2 90.1 REMARK 620 7 ASP A1593 OD2 86.1 128.1 147.1 68.5 88.7 45.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 3 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 101 O REMARK 620 2 HOH A 101 O 81.6 REMARK 620 3 HOH A 102 O 91.8 172.9 REMARK 620 4 HOH A 102 O 177.1 98.6 87.9 REMARK 620 5 HOH A 103 O 85.9 90.7 86.3 91.2 REMARK 620 6 HOH A 103 O 91.0 91.3 91.4 91.9 176.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 3 DBREF 2DDU A 1222 1597 UNP Q64FW1 Q64FW1_MOUSE 358 733 SEQADV 2DDU GLY A 1220 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU ARG A 1221 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU SER A 1598 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU ARG A 1599 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU LEU A 1600 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU GLU A 1601 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU ASN A 1602 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU LEU A 1603 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU TYR A 1604 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU PHE A 1605 UNP Q64FW1 CLONING ARTIFACT SEQADV 2DDU GLN A 1606 UNP Q64FW1 CLONING ARTIFACT SEQRES 1 A 387 GLY ARG SER GLU LYS GLN LYS GLN VAL ILE PRO VAL VAL SEQRES 2 A 387 ASN PRO THR LEU PRO GLN ASN PHE TYR GLU LYS PRO ALA SEQRES 3 A 387 PHE ASP TYR PRO MET ASN GLN MET SER VAL TRP LEU MET SEQRES 4 A 387 LEU ALA ASN GLU GLY MET ALA LYS ASN ASP SER PHE CYS SEQRES 5 A 387 ALA THR THR PRO SER ALA MET VAL PHE GLY LYS SER ASP SEQRES 6 A 387 GLY ASP ARG PHE ALA VAL THR ARG ASP LEU THR LEU LYS SEQRES 7 A 387 PRO GLY TYR VAL LEU GLN PHE LYS LEU ASN ILE GLY CYS SEQRES 8 A 387 THR SER GLN PHE SER SER THR ALA PRO VAL LEU LEU GLN SEQRES 9 A 387 TYR SER HIS ASP ALA GLY MET SER TRP PHE LEU VAL LYS SEQRES 10 A 387 GLU GLY CYS PHE PRO ALA SER ALA GLY LYS GLY CYS GLU SEQRES 11 A 387 GLY ASN SER ARG GLU LEU SER GLU PRO THR VAL TYR TYR SEQRES 12 A 387 THR GLY ASP PHE GLU GLU TRP THR ARG ILE THR ILE ALA SEQRES 13 A 387 ILE PRO ARG SER LEU ALA SER SER LYS THR ARG PHE ARG SEQRES 14 A 387 TRP ILE GLN GLU SER SER SER GLN LYS ASN VAL PRO PRO SEQRES 15 A 387 PHE GLY LEU ASP GLY VAL TYR ILE SER GLU PRO CYS PRO SEQRES 16 A 387 SER TYR CYS SER GLY HIS GLY ASP CYS ILE SER GLY VAL SEQRES 17 A 387 CYS PHE CYS ASP LEU GLY TYR THR ALA ALA GLN GLY THR SEQRES 18 A 387 CYS VAL SER ASN THR PRO ASN HIS SER GLU MET PHE ASP SEQRES 19 A 387 ARG PHE GLU GLY LYS LEU SER PRO LEU TRP TYR LYS ILE SEQRES 20 A 387 THR GLY GLY GLN VAL GLY THR GLY CYS GLY THR LEU ASN SEQRES 21 A 387 ASP GLY ARG SER LEU TYR PHE ASN GLY LEU GLY LYS ARG SEQRES 22 A 387 GLU ALA ARG THR VAL PRO LEU ASP THR ARG ASN ILE ARG SEQRES 23 A 387 LEU VAL GLN PHE TYR ILE GLN ILE GLY SER LYS THR SER SEQRES 24 A 387 GLY ILE THR CYS ILE LYS PRO ARG ALA ARG ASN GLU GLY SEQRES 25 A 387 LEU VAL VAL GLN TYR SER ASN ASP ASN GLY ILE LEU TRP SEQRES 26 A 387 HIS LEU LEU ARG GLU LEU ASP PHE MET SER PHE LEU GLU SEQRES 27 A 387 PRO GLN ILE ILE SER ILE ASP LEU PRO ARG GLU ALA LYS SEQRES 28 A 387 THR PRO ALA THR ALA PHE ARG TRP TRP GLN PRO GLN HIS SEQRES 29 A 387 GLY LYS HIS SER ALA GLN TRP ALA LEU ASP ASP VAL LEU SEQRES 30 A 387 ILE SER ARG LEU GLU ASN LEU TYR PHE GLN HET CA A 1 1 HET CL A 2 1 HET MG A 3 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION FORMUL 2 CA CA 2+ FORMUL 3 CL CL 1- FORMUL 4 MG MG 2+ FORMUL 5 HOH *100(H2 O) HELIX 1 1 PRO A 1377 ALA A 1381 5 5 HELIX 2 2 CYS A 1413 GLY A 1419 5 7 HELIX 3 3 ALA A 1527 GLY A 1531 5 5 HELIX 4 4 PRO A 1566 LYS A 1570 5 5 HELIX 5 5 HIS A 1583 SER A 1587 5 5 SHEET 1 A 3 THR A1370 ALA A1375 0 SHEET 2 A 3 VAL A1301 LEU A1306 -1 N LEU A1302 O ILE A1374 SHEET 3 A 3 TYR A1408 SER A1410 -1 O SER A1410 N VAL A1301 SHEET 1 B 3 PHE A1333 LEU A1334 0 SHEET 2 B 3 VAL A1320 SER A1325 -1 N TYR A1324 O PHE A1333 SHEET 3 B 3 VAL A1360 TYR A1361 -1 O TYR A1361 N VAL A1320 SHEET 1 C 3 PHE A1333 LEU A1334 0 SHEET 2 C 3 VAL A1320 SER A1325 -1 N TYR A1324 O PHE A1333 SHEET 3 C 3 ARG A1386 ILE A1390 -1 O ARG A1388 N GLN A1323 SHEET 1 D 2 GLY A1421 ILE A1424 0 SHEET 2 D 2 VAL A1427 CYS A1430 -1 O PHE A1429 N ASP A1422 SHEET 1 E 2 TYR A1434 ALA A1437 0 SHEET 2 E 2 THR A1440 SER A1443 -1 O VAL A1442 N THR A1435 SHEET 1 F 4 MET A1451 ASP A1453 0 SHEET 2 F 4 TRP A1590 SER A1598 -1 O ILE A1597 N MET A1451 SHEET 3 F 4 SER A1483 PHE A1486 -1 N PHE A1486 O TRP A1590 SHEET 4 F 4 GLY A1469 GLY A1472 -1 N GLY A1472 O SER A1483 SHEET 1 G 4 MET A1451 ASP A1453 0 SHEET 2 G 4 TRP A1590 SER A1598 -1 O ILE A1597 N MET A1451 SHEET 3 G 4 LEU A1506 ILE A1513 -1 N GLN A1508 O LEU A1596 SHEET 4 G 4 GLN A1559 ASP A1564 -1 O ILE A1563 N VAL A1507 SHEET 1 H 5 TRP A1463 THR A1467 0 SHEET 2 H 5 GLU A1493 THR A1496 -1 O GLU A1493 N THR A1467 SHEET 3 H 5 ALA A1575 TRP A1579 -1 O PHE A1576 N THR A1496 SHEET 4 H 5 LEU A1532 SER A1537 -1 N SER A1537 O ALA A1575 SHEET 5 H 5 HIS A1545 LEU A1550 -1 O HIS A1545 N TYR A1536 SSBOND 1 CYS A 1339 CYS A 1348 1555 1555 2.04 SSBOND 2 CYS A 1413 CYS A 1423 1555 1555 2.04 SSBOND 3 CYS A 1417 CYS A 1428 1555 1555 2.04 SSBOND 4 CYS A 1430 CYS A 1441 1555 1555 2.06 SSBOND 5 CYS A 1475 CYS A 1522 1555 1555 2.07 LINK CA CA A 1 O HOH A 97 1555 1555 2.24 LINK CA CA A 1 O ARG A1454 1555 1555 2.28 LINK CA CA A 1 OE2 GLU A1456 1555 1555 2.38 LINK CA CA A 1 O ASP A1480 1555 1555 2.32 LINK CA CA A 1 O ARG A1482 1555 1555 2.44 LINK CA CA A 1 OD1 ASP A1593 1555 1555 2.40 LINK CA CA A 1 OD2 ASP A1593 1555 1555 3.08 LINK MG MG A 3 O HOH A 101 1555 1555 2.07 LINK MG MG A 3 O HOH A 101 1555 12555 1.97 LINK MG MG A 3 O HOH A 102 1555 1555 2.07 LINK MG MG A 3 O HOH A 102 1555 12555 1.96 LINK MG MG A 3 O HOH A 103 1555 1555 2.39 LINK MG MG A 3 O HOH A 103 1555 12555 2.29 SITE 1 AC1 6 HOH A 97 ARG A1454 GLU A1456 ASP A1480 SITE 2 AC1 6 ARG A1482 ASP A1593 SITE 1 AC2 1 ARG A1548 SITE 1 AC3 4 HOH A 101 HOH A 102 HOH A 103 GLU A1549 CRYST1 129.932 129.932 122.485 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007696 0.004443 0.000000 0.00000 SCALE2 0.000000 0.008887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008164 0.00000