HEADER HYDROLASE 02-MAR-06 2DFJ TITLE CRYSTAL STRUCTURE OF THE DIADENOSINE TETRAPHOSPHATE HYDROLASE FROM TITLE 2 SHIGELLA FLEXNERI 2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIADENOSINETETRAPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIADENOSINE TETRAPHOSPHATE HYDROLASE; COMPND 5 EC: 3.6.1.41; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI 2A; SOURCE 3 ORGANISM_TAXID: 42897; SOURCE 4 STRAIN: STRAIN 301; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS HELICES AND STRANDS MIXTURE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.H.WANG,W.X.HU,R.C.BI REVDAT 3 13-MAR-24 2DFJ 1 REMARK LINK REVDAT 2 24-FEB-09 2DFJ 1 VERSN REVDAT 1 05-DEC-06 2DFJ 0 JRNL AUTH Q.H.WANG,W.X.HU,W.GAO,R.C.BI JRNL TITL CRYSTAL STRUCTURE OF THE DIADENOSINE TETRAPHOSPHATE JRNL TITL 2 HYDROLASE FROM SHIGELLA FLEXNERI 2A JRNL REF PROTEINS V. 65 1032 2006 JRNL REFN ISSN 0887-3585 JRNL PMID 17006950 JRNL DOI 10.1002/PROT.21106 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 21519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1164 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.72 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1304 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.4160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.07000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.641 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.333 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.260 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.915 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4266 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5821 ; 1.560 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 532 ; 8.625 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 187 ;33.316 ;23.743 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;21.049 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.423 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 630 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3307 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2193 ; 0.256 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2836 ; 0.320 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 205 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.322 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.182 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2705 ; 0.781 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4259 ; 0.891 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1793 ; 1.467 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1562 ; 2.121 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2DFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22410 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12300 REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.12300 REMARK 200 R SYM FOR SHELL (I) : 0.46900 REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.2M MAGNESIUM CHLORIDE REMARK 280 AND 25% PEG 3350, PH 6.8, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.74900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.48250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.74900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.48250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TWO MOLECULES IN THE ASYMMETRIC UNIT ARE RELATED BY A REMARK 300 NON-CRYSTALLOGRAPHIC TWO FOLD AXIS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 269 REMARK 465 ARG A 270 REMARK 465 HIS A 271 REMARK 465 LYS A 272 REMARK 465 ASP A 273 REMARK 465 LEU A 274 REMARK 465 GLY A 275 REMARK 465 GLU A 276 REMARK 465 ALA A 277 REMARK 465 ALA A 278 REMARK 465 ALA A 279 REMARK 465 SER A 280 REMARK 465 MET B 1 REMARK 465 ASN B 269 REMARK 465 ARG B 270 REMARK 465 HIS B 271 REMARK 465 LYS B 272 REMARK 465 ASP B 273 REMARK 465 LEU B 274 REMARK 465 GLY B 275 REMARK 465 GLU B 276 REMARK 465 ALA B 277 REMARK 465 ALA B 278 REMARK 465 ALA B 279 REMARK 465 SER B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ARG A 79 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 ARG A 137 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 156 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 197 CG CD CE NZ REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 LYS A 208 CG CD CE NZ REMARK 470 GLU A 238 CG CD OE1 OE2 REMARK 470 LYS B 29 CG CD CE NZ REMARK 470 ARG B 41 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 208 CG CD CE NZ REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1016 O HOH A 1021 1.94 REMARK 500 OD1 ASP B 8 O GLY B 226 2.01 REMARK 500 N HIS A 10 O HOH A 1007 2.08 REMARK 500 O SER B 164 N GLU B 166 2.15 REMARK 500 N GLY B 7 O HOH B 2032 2.16 REMARK 500 O HOH A 1006 O HOH A 1030 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA B 92 C - N - CA ANGL. DEV. = -21.3 DEGREES REMARK 500 ALA B 92 N - CA - C ANGL. DEV. = 19.3 DEGREES REMARK 500 PRO B 93 C - N - CA ANGL. DEV. = 28.5 DEGREES REMARK 500 PRO B 93 C - N - CD ANGL. DEV. = -24.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 9 77.04 -104.49 REMARK 500 ALA A 40 -109.27 -64.69 REMARK 500 TYR A 156 -47.27 -177.96 REMARK 500 MET A 159 114.33 175.59 REMARK 500 ARG A 184 -72.29 -151.19 REMARK 500 GLU A 202 71.94 -112.93 REMARK 500 ALA A 205 -148.36 -74.59 REMARK 500 PRO A 206 -36.77 -5.73 REMARK 500 TRP A 228 63.82 -47.76 REMARK 500 ILE B 6 -61.81 -94.59 REMARK 500 ASP B 8 98.18 -43.29 REMARK 500 PRO B 27 -34.92 -38.07 REMARK 500 ASP B 37 62.78 -110.18 REMARK 500 ARG B 41 105.48 -2.63 REMARK 500 PRO B 43 -70.06 -68.67 REMARK 500 GLU B 91 -78.32 -49.72 REMARK 500 ALA B 92 -143.36 -169.12 REMARK 500 PRO B 93 -17.07 -9.81 REMARK 500 SER B 164 69.05 -164.70 REMARK 500 PRO B 165 -28.65 -17.23 REMARK 500 ARG B 184 -69.28 -135.41 REMARK 500 PRO B 200 -42.92 -26.98 REMARK 500 ALA B 205 -75.05 -36.89 REMARK 500 GLU B 220 -20.01 -140.92 REMARK 500 HIS B 227 -20.49 -151.95 REMARK 500 LYS B 234 -118.77 -105.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 159 PRO A 160 97.35 REMARK 500 GLU A 259 ASP A 260 -145.14 REMARK 500 ALA B 92 PRO B 93 -113.98 REMARK 500 MET B 159 PRO B 160 142.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 8 OD2 REMARK 620 2 HIS A 10 NE2 104.2 REMARK 620 3 ASP A 37 OD2 91.9 110.9 REMARK 620 4 HOH A1022 O 165.1 85.0 95.8 REMARK 620 5 HOH A1023 O 81.1 73.4 172.6 90.6 REMARK 620 6 HOH A1029 O 73.2 161.1 88.0 94.2 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD2 REMARK 620 2 ASN A 65 OD1 87.2 REMARK 620 3 HIS A 120 NE2 90.5 85.3 REMARK 620 4 HIS A 227 ND1 162.6 101.9 104.9 REMARK 620 5 HOH A1021 O 82.3 91.0 172.0 82.7 REMARK 620 6 HOH A1029 O 78.5 154.0 116.1 87.3 65.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B2002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 8 OD2 REMARK 620 2 HIS B 10 NE2 113.3 REMARK 620 3 ASP B 37 OD2 88.2 101.7 REMARK 620 4 HOH B2007 O 75.5 86.4 163.6 REMARK 620 5 HOH B2017 O 166.8 60.8 104.4 92.0 REMARK 620 6 HOH B2025 O 64.9 167.8 90.4 81.5 118.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B2001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 37 OD2 REMARK 620 2 ASN B 65 OD1 81.2 REMARK 620 3 HIS B 120 NE2 86.6 76.2 REMARK 620 4 HIS B 227 ND1 175.8 94.6 92.3 REMARK 620 5 HOH B2023 O 94.7 99.2 175.0 86.1 REMARK 620 6 HOH B2025 O 82.3 158.5 116.3 101.9 68.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 2002 DBREF 2DFJ A 1 280 GB 24111495 NP_706005 1 280 DBREF 2DFJ B 1 280 GB 24111495 NP_706005 1 280 SEQRES 1 A 280 MET ALA THR TYR LEU ILE GLY ASP VAL HIS GLY CYS TYR SEQRES 2 A 280 ASP GLU LEU ILE ALA LEU LEU HIS LYS VAL GLU PHE THR SEQRES 3 A 280 PRO GLY LYS ASP THR LEU TRP LEU THR GLY ASP LEU VAL SEQRES 4 A 280 ALA ARG GLY PRO GLY SER LEU ASP VAL LEU ARG TYR VAL SEQRES 5 A 280 LYS SER LEU GLY ASP SER VAL ARG LEU VAL LEU GLY ASN SEQRES 6 A 280 HIS ASP LEU HIS LEU LEU ALA VAL PHE ALA GLY ILE SER SEQRES 7 A 280 ARG ASN LYS PRO LYS ASP ARG LEU THR PRO LEU LEU GLU SEQRES 8 A 280 ALA PRO ASP ALA ASP GLU LEU LEU ASN TRP LEU ARG ARG SEQRES 9 A 280 GLN PRO LEU LEU GLN ILE ASP GLU GLU LYS LYS LEU VAL SEQRES 10 A 280 MET ALA HIS ALA GLY ILE THR PRO GLN TRP ASP LEU GLN SEQRES 11 A 280 THR ALA LYS GLU CYS ALA ARG ASP VAL GLU ALA VAL LEU SEQRES 12 A 280 SER SER ASP SER TYR PRO PHE PHE LEU ASP ALA MET TYR SEQRES 13 A 280 GLY ASP MET PRO ASN ASN TRP SER PRO GLU LEU ARG GLY SEQRES 14 A 280 LEU GLY ARG LEU ARG PHE ILE THR ASN ALA PHE THR ARG SEQRES 15 A 280 MET ARG PHE CYS PHE PRO ASN GLY GLN LEU ASP MET TYR SEQRES 16 A 280 SER LYS GLU SER PRO GLU GLU ALA PRO ALA PRO LEU LYS SEQRES 17 A 280 PRO TRP PHE ALA ILE PRO GLY PRO VAL ALA GLU GLU TYR SEQRES 18 A 280 SER ILE ALA PHE GLY HIS TRP ALA SER LEU GLU GLY LYS SEQRES 19 A 280 GLY THR PRO GLU GLY ILE TYR ALA LEU ASP THR GLY CYS SEQRES 20 A 280 CYS TRP GLY GLY SER LEU THR CYS LEU ARG TRP GLU ASP SEQRES 21 A 280 LYS GLN TYR PHE VAL GLN PRO SER ASN ARG HIS LYS ASP SEQRES 22 A 280 LEU GLY GLU ALA ALA ALA SER SEQRES 1 B 280 MET ALA THR TYR LEU ILE GLY ASP VAL HIS GLY CYS TYR SEQRES 2 B 280 ASP GLU LEU ILE ALA LEU LEU HIS LYS VAL GLU PHE THR SEQRES 3 B 280 PRO GLY LYS ASP THR LEU TRP LEU THR GLY ASP LEU VAL SEQRES 4 B 280 ALA ARG GLY PRO GLY SER LEU ASP VAL LEU ARG TYR VAL SEQRES 5 B 280 LYS SER LEU GLY ASP SER VAL ARG LEU VAL LEU GLY ASN SEQRES 6 B 280 HIS ASP LEU HIS LEU LEU ALA VAL PHE ALA GLY ILE SER SEQRES 7 B 280 ARG ASN LYS PRO LYS ASP ARG LEU THR PRO LEU LEU GLU SEQRES 8 B 280 ALA PRO ASP ALA ASP GLU LEU LEU ASN TRP LEU ARG ARG SEQRES 9 B 280 GLN PRO LEU LEU GLN ILE ASP GLU GLU LYS LYS LEU VAL SEQRES 10 B 280 MET ALA HIS ALA GLY ILE THR PRO GLN TRP ASP LEU GLN SEQRES 11 B 280 THR ALA LYS GLU CYS ALA ARG ASP VAL GLU ALA VAL LEU SEQRES 12 B 280 SER SER ASP SER TYR PRO PHE PHE LEU ASP ALA MET TYR SEQRES 13 B 280 GLY ASP MET PRO ASN ASN TRP SER PRO GLU LEU ARG GLY SEQRES 14 B 280 LEU GLY ARG LEU ARG PHE ILE THR ASN ALA PHE THR ARG SEQRES 15 B 280 MET ARG PHE CYS PHE PRO ASN GLY GLN LEU ASP MET TYR SEQRES 16 B 280 SER LYS GLU SER PRO GLU GLU ALA PRO ALA PRO LEU LYS SEQRES 17 B 280 PRO TRP PHE ALA ILE PRO GLY PRO VAL ALA GLU GLU TYR SEQRES 18 B 280 SER ILE ALA PHE GLY HIS TRP ALA SER LEU GLU GLY LYS SEQRES 19 B 280 GLY THR PRO GLU GLY ILE TYR ALA LEU ASP THR GLY CYS SEQRES 20 B 280 CYS TRP GLY GLY SER LEU THR CYS LEU ARG TRP GLU ASP SEQRES 21 B 280 LYS GLN TYR PHE VAL GLN PRO SER ASN ARG HIS LYS ASP SEQRES 22 B 280 LEU GLY GLU ALA ALA ALA SER HET MN A1001 1 HET MN A1002 1 HET MN B2001 1 HET MN B2002 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 4(MN 2+) FORMUL 7 HOH *162(H2 O) HELIX 1 1 CYS A 12 VAL A 23 1 12 HELIX 2 2 GLY A 44 LEU A 55 1 12 HELIX 3 3 GLY A 64 ALA A 75 1 12 HELIX 4 4 LYS A 81 ARG A 85 5 5 HELIX 5 5 LEU A 86 GLU A 91 1 6 HELIX 6 6 ASP A 94 ARG A 104 1 11 HELIX 7 7 ASP A 128 SER A 145 1 18 HELIX 8 8 SER A 147 MET A 155 1 9 HELIX 9 9 ARG A 168 ARG A 182 1 15 HELIX 10 10 SER A 199 ALA A 203 5 5 HELIX 11 11 PHE A 211 ILE A 213 5 3 HELIX 12 12 TRP A 228 GLU A 232 5 5 HELIX 13 13 CYS B 12 VAL B 23 1 12 HELIX 14 14 GLY B 44 LEU B 55 1 12 HELIX 15 15 GLY B 64 ALA B 75 1 12 HELIX 16 16 LYS B 81 ARG B 85 5 5 HELIX 17 17 LEU B 86 ALA B 92 1 7 HELIX 18 18 ASP B 94 ARG B 104 1 11 HELIX 19 19 ASP B 128 SER B 144 1 17 HELIX 20 20 SER B 147 MET B 155 1 9 HELIX 21 21 ARG B 168 ARG B 182 1 15 HELIX 22 22 PHE B 211 ILE B 213 5 3 HELIX 23 23 PRO B 216 GLU B 220 5 5 HELIX 24 24 TRP B 228 GLU B 232 5 5 SHEET 1 A 5 VAL A 59 LEU A 61 0 SHEET 2 A 5 THR A 31 LEU A 34 1 N LEU A 34 O ARG A 60 SHEET 3 A 5 THR A 3 ILE A 6 1 N TYR A 4 O TRP A 33 SHEET 4 A 5 SER A 252 ARG A 257 -1 O LEU A 256 N LEU A 5 SHEET 5 A 5 GLN A 262 PRO A 267 -1 O GLN A 266 N LEU A 253 SHEET 1 B 4 LEU A 108 ASP A 111 0 SHEET 2 B 4 LEU A 116 ALA A 119 -1 O MET A 118 N GLN A 109 SHEET 3 B 4 SER A 222 PHE A 225 1 O ALA A 224 N VAL A 117 SHEET 4 B 4 ILE A 240 ALA A 242 1 O TYR A 241 N ILE A 223 SHEET 1 C 3 GLN A 191 ASP A 193 0 SHEET 2 C 3 PHE A 185 PHE A 187 -1 N PHE A 185 O ASP A 193 SHEET 3 C 3 LYS A 208 PRO A 209 -1 O LYS A 208 N CYS A 186 SHEET 1 D 5 VAL B 59 LEU B 61 0 SHEET 2 D 5 THR B 31 LEU B 34 1 N LEU B 32 O ARG B 60 SHEET 3 D 5 THR B 3 LEU B 5 1 N TYR B 4 O TRP B 33 SHEET 4 D 5 SER B 252 ARG B 257 -1 O LEU B 256 N LEU B 5 SHEET 5 D 5 GLN B 262 PRO B 267 -1 O PHE B 264 N CYS B 255 SHEET 1 E 4 GLN B 109 ASP B 111 0 SHEET 2 E 4 LEU B 116 MET B 118 -1 O LEU B 116 N ASP B 111 SHEET 3 E 4 SER B 222 PHE B 225 1 O ALA B 224 N VAL B 117 SHEET 4 E 4 ILE B 240 ALA B 242 1 O TYR B 241 N ILE B 223 SHEET 1 F 2 PHE B 185 CYS B 186 0 SHEET 2 F 2 LYS B 208 PRO B 209 -1 O LYS B 208 N CYS B 186 LINK OD2 ASP A 8 MN MN A1002 1555 1555 2.19 LINK NE2 HIS A 10 MN MN A1002 1555 1555 2.13 LINK OD2 ASP A 37 MN MN A1001 1555 1555 2.39 LINK OD2 ASP A 37 MN MN A1002 1555 1555 2.41 LINK OD1 ASN A 65 MN MN A1001 1555 1555 2.09 LINK NE2 HIS A 120 MN MN A1001 1555 1555 2.21 LINK ND1 HIS A 227 MN MN A1001 1555 1555 2.17 LINK MN MN A1001 O HOH A1021 1555 1555 2.29 LINK MN MN A1001 O HOH A1029 1555 1555 2.42 LINK MN MN A1002 O HOH A1022 1555 1555 2.52 LINK MN MN A1002 O HOH A1023 1555 1555 2.27 LINK MN MN A1002 O HOH A1029 1555 1555 1.95 LINK OD2 ASP B 8 MN MN B2002 1555 1555 2.57 LINK NE2 HIS B 10 MN MN B2002 1555 1555 2.23 LINK OD2 ASP B 37 MN MN B2001 1555 1555 2.29 LINK OD2 ASP B 37 MN MN B2002 1555 1555 2.38 LINK OD1 ASN B 65 MN MN B2001 1555 1555 2.06 LINK NE2 HIS B 120 MN MN B2001 1555 1555 2.51 LINK ND1 HIS B 227 MN MN B2001 1555 1555 2.32 LINK MN MN B2001 O HOH B2023 1555 1555 2.60 LINK MN MN B2001 O HOH B2025 1555 1555 2.54 LINK MN MN B2002 O HOH B2007 1555 1555 2.39 LINK MN MN B2002 O HOH B2017 1555 1555 2.48 LINK MN MN B2002 O HOH B2025 1555 1555 2.10 SITE 1 AC1 7 ASP A 37 ASN A 65 HIS A 120 HIS A 227 SITE 2 AC1 7 MN A1002 HOH A1021 HOH A1029 SITE 1 AC2 7 ASP A 8 HIS A 10 ASP A 37 MN A1001 SITE 2 AC2 7 HOH A1022 HOH A1023 HOH A1029 SITE 1 AC3 7 ASP B 37 ASN B 65 HIS B 120 HIS B 227 SITE 2 AC3 7 MN B2002 HOH B2023 HOH B2025 SITE 1 AC4 7 ASP B 8 HIS B 10 ASP B 37 MN B2001 SITE 2 AC4 7 HOH B2007 HOH B2017 HOH B2025 CRYST1 167.498 54.965 119.203 90.00 129.14 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005970 0.000000 0.004859 0.00000 SCALE2 0.000000 0.018193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010816 0.00000