HEADER ELECTRON TRANSPORT 11-MAR-06 2DGE TITLE CRYSTAL STRUCTURE OF OXIDIZED CYTOCHROME C6A FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C6; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CYTOCHROME C6 LIKE PROTEIN, SOLUBLE CYTOCHROME F, CYTOCHROME COMPND 5 C553, CYTOCHROME C-553, CYTOCHROME C-552, ATC6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ATC6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET22B(+); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSTV28CCM-A-H KEYWDS CYTOCHROME C6A, ELECTRON TRANSFER, HEME EXPOSURE, ARABIDOPSIS KEYWDS 2 THALIANA, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR H.CHIDA,T.YOKOYAMA,F.KAWAI,A.NAKAZAWA,H.AKAZAKI,Y.TAKAYAMA,T.HIRANO, AUTHOR 2 K.SURUGA,T.SATOH,S.YAMADA,R.KAWACHI,S.UNZAI,T.NISHIO,S.-Y.PARK,T.OKU REVDAT 4 25-OCT-23 2DGE 1 REMARK LINK REVDAT 3 13-JUL-11 2DGE 1 VERSN REVDAT 2 24-FEB-09 2DGE 1 VERSN REVDAT 1 04-JUL-06 2DGE 0 JRNL AUTH H.CHIDA,T.YOKOYAMA,F.KAWAI,A.NAKAZAWA,H.AKAZAKI,Y.TAKAYAMA, JRNL AUTH 2 T.HIRANO,K.SURUGA,T.SATOH,S.YAMADA,R.KAWACHI,S.UNZAI, JRNL AUTH 3 T.NISHIO,S.-Y.PARK,T.OKU JRNL TITL CRYSTAL STRUCTURE OF OXIDIZED CYTOCHROME C(6A) FROM JRNL TITL 2 ARABIDOPSIS THALIANA JRNL REF FEBS LETT. V. 580 3763 2006 JRNL REFN ISSN 0014-5793 JRNL PMID 16777100 JRNL DOI 10.1016/J.FEBSLET.2006.05.067 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 56923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3029 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3018 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3186 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 248 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.27000 REMARK 3 B13 (A**2) : 0.37000 REMARK 3 B23 (A**2) : -0.22000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.083 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.573 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3495 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4716 ; 1.122 ; 2.106 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 4.853 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2712 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1563 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 205 ; 0.097 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 35 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.081 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1994 ; 0.706 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3199 ; 1.385 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 1.989 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1517 ; 3.305 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DGE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI(III) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1GDV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEGMME550, MES, ZNSO4, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -187.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -50.44300 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 173 REMARK 465 THR A 174 REMARK 465 ASP A 175 REMARK 465 SER B 173 REMARK 465 THR B 174 REMARK 465 ASP B 175 REMARK 465 SER C 173 REMARK 465 THR C 174 REMARK 465 ASP C 175 REMARK 465 THR D 171 REMARK 465 VAL D 172 REMARK 465 SER D 173 REMARK 465 THR D 174 REMARK 465 ASP D 175 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 151 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 166 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 166 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP C 166 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP D 166 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 113 52.33 -114.36 REMARK 500 LYS A 127 114.76 -165.62 REMARK 500 ASN B 95 111.42 -161.83 REMARK 500 LYS D 127 105.46 -163.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 74 OD1 REMARK 620 2 GLU A 159 OE2 122.4 REMARK 620 3 ASP C 74 OD2 98.5 111.4 REMARK 620 4 GLU C 159 OE2 109.0 95.1 122.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 90 NE2 REMARK 620 2 HEM A 200 NA 94.9 REMARK 620 3 HEM A 200 NB 91.6 90.4 REMARK 620 4 HEM A 200 NC 87.2 177.8 88.9 REMARK 620 5 HEM A 200 ND 88.3 89.4 179.8 91.3 REMARK 620 6 MET A 130 SD 175.7 82.0 91.4 96.0 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 74 OD2 REMARK 620 2 GLU B 159 OE2 122.5 REMARK 620 3 ASP D 74 OD1 98.7 105.5 REMARK 620 4 GLU D 159 OE2 111.8 98.8 121.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 90 NE2 REMARK 620 2 HEM B 200 NA 94.3 REMARK 620 3 HEM B 200 NB 92.9 89.5 REMARK 620 4 HEM B 200 NC 89.4 176.3 89.8 REMARK 620 5 HEM B 200 ND 87.8 92.2 178.2 88.6 REMARK 620 6 MET B 130 SD 175.5 81.5 88.7 94.8 90.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 90 NE2 REMARK 620 2 HEM C 200 NA 92.6 REMARK 620 3 HEM C 200 NB 91.7 89.3 REMARK 620 4 HEM C 200 NC 89.9 177.3 89.5 REMARK 620 5 HEM C 200 ND 88.7 91.5 179.1 89.7 REMARK 620 6 MET C 130 SD 175.8 83.8 90.3 93.8 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 200 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 90 NE2 REMARK 620 2 HEM D 200 NA 93.6 REMARK 620 3 HEM D 200 NB 91.4 89.4 REMARK 620 4 HEM D 200 NC 88.6 177.6 89.6 REMARK 620 5 HEM D 200 ND 89.3 90.0 179.1 91.0 REMARK 620 6 MET D 130 SD 171.8 94.4 86.9 83.4 92.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 200 DBREF 2DGE A 71 175 UNP Q93VA3 CYC6_ARATH 71 175 DBREF 2DGE B 71 175 UNP Q93VA3 CYC6_ARATH 71 175 DBREF 2DGE C 71 175 UNP Q93VA3 CYC6_ARATH 71 175 DBREF 2DGE D 71 175 UNP Q93VA3 CYC6_ARATH 71 175 SEQRES 1 A 105 GLN THR LEU ASP ILE GLN ARG GLY ALA THR LEU PHE ASN SEQRES 2 A 105 ARG ALA CYS ILE GLY CYS HIS ASP THR GLY GLY ASN ILE SEQRES 3 A 105 ILE GLN PRO GLY ALA THR LEU PHE THR LYS ASP LEU GLU SEQRES 4 A 105 ARG ASN GLY VAL ASP THR GLU GLU GLU ILE TYR ARG VAL SEQRES 5 A 105 THR TYR PHE GLY LYS GLY ARG MET PRO GLY PHE GLY GLU SEQRES 6 A 105 LYS CYS THR PRO ARG GLY GLN CYS THR PHE GLY PRO ARG SEQRES 7 A 105 LEU GLN ASP GLU GLU ILE LYS LEU LEU ALA GLU PHE VAL SEQRES 8 A 105 LYS PHE GLN ALA ASP GLN GLY TRP PRO THR VAL SER THR SEQRES 9 A 105 ASP SEQRES 1 B 105 GLN THR LEU ASP ILE GLN ARG GLY ALA THR LEU PHE ASN SEQRES 2 B 105 ARG ALA CYS ILE GLY CYS HIS ASP THR GLY GLY ASN ILE SEQRES 3 B 105 ILE GLN PRO GLY ALA THR LEU PHE THR LYS ASP LEU GLU SEQRES 4 B 105 ARG ASN GLY VAL ASP THR GLU GLU GLU ILE TYR ARG VAL SEQRES 5 B 105 THR TYR PHE GLY LYS GLY ARG MET PRO GLY PHE GLY GLU SEQRES 6 B 105 LYS CYS THR PRO ARG GLY GLN CYS THR PHE GLY PRO ARG SEQRES 7 B 105 LEU GLN ASP GLU GLU ILE LYS LEU LEU ALA GLU PHE VAL SEQRES 8 B 105 LYS PHE GLN ALA ASP GLN GLY TRP PRO THR VAL SER THR SEQRES 9 B 105 ASP SEQRES 1 C 105 GLN THR LEU ASP ILE GLN ARG GLY ALA THR LEU PHE ASN SEQRES 2 C 105 ARG ALA CYS ILE GLY CYS HIS ASP THR GLY GLY ASN ILE SEQRES 3 C 105 ILE GLN PRO GLY ALA THR LEU PHE THR LYS ASP LEU GLU SEQRES 4 C 105 ARG ASN GLY VAL ASP THR GLU GLU GLU ILE TYR ARG VAL SEQRES 5 C 105 THR TYR PHE GLY LYS GLY ARG MET PRO GLY PHE GLY GLU SEQRES 6 C 105 LYS CYS THR PRO ARG GLY GLN CYS THR PHE GLY PRO ARG SEQRES 7 C 105 LEU GLN ASP GLU GLU ILE LYS LEU LEU ALA GLU PHE VAL SEQRES 8 C 105 LYS PHE GLN ALA ASP GLN GLY TRP PRO THR VAL SER THR SEQRES 9 C 105 ASP SEQRES 1 D 105 GLN THR LEU ASP ILE GLN ARG GLY ALA THR LEU PHE ASN SEQRES 2 D 105 ARG ALA CYS ILE GLY CYS HIS ASP THR GLY GLY ASN ILE SEQRES 3 D 105 ILE GLN PRO GLY ALA THR LEU PHE THR LYS ASP LEU GLU SEQRES 4 D 105 ARG ASN GLY VAL ASP THR GLU GLU GLU ILE TYR ARG VAL SEQRES 5 D 105 THR TYR PHE GLY LYS GLY ARG MET PRO GLY PHE GLY GLU SEQRES 6 D 105 LYS CYS THR PRO ARG GLY GLN CYS THR PHE GLY PRO ARG SEQRES 7 D 105 LEU GLN ASP GLU GLU ILE LYS LEU LEU ALA GLU PHE VAL SEQRES 8 D 105 LYS PHE GLN ALA ASP GLN GLY TRP PRO THR VAL SER THR SEQRES 9 D 105 ASP HET ZN A1001 1 HET HEM A 200 43 HET ZN B1002 1 HET HEM B 200 43 HET HEM C 200 43 HET HEM D 200 43 HETNAM ZN ZINC ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 5 ZN 2(ZN 2+) FORMUL 6 HEM 4(C34 H32 FE N4 O4) FORMUL 11 HOH *248(H2 O) HELIX 1 1 THR A 72 CYS A 86 1 15 HELIX 2 2 CYS A 86 ASP A 91 1 6 HELIX 3 3 THR A 92 GLY A 94 5 3 HELIX 4 4 PHE A 104 GLY A 112 1 9 HELIX 5 5 THR A 115 GLY A 126 1 12 HELIX 6 6 PRO A 139 CYS A 143 5 5 HELIX 7 7 GLN A 150 GLY A 168 1 19 HELIX 8 8 THR B 72 CYS B 86 1 15 HELIX 9 9 CYS B 86 ASP B 91 1 6 HELIX 10 10 THR B 92 GLY B 94 5 3 HELIX 11 11 PHE B 104 ASN B 111 1 8 HELIX 12 12 THR B 115 PHE B 125 1 11 HELIX 13 13 PRO B 139 CYS B 143 5 5 HELIX 14 14 GLN B 150 GLY B 168 1 19 HELIX 15 15 THR C 72 CYS C 86 1 15 HELIX 16 16 CYS C 86 ASP C 91 1 6 HELIX 17 17 THR C 92 GLY C 94 5 3 HELIX 18 18 PHE C 104 ASN C 111 1 8 HELIX 19 19 THR C 115 GLY C 126 1 12 HELIX 20 20 PRO C 139 CYS C 143 5 5 HELIX 21 21 GLN C 150 GLN C 167 1 18 HELIX 22 22 THR D 72 CYS D 86 1 15 HELIX 23 23 CYS D 86 ASP D 91 1 6 HELIX 24 24 THR D 92 GLY D 94 5 3 HELIX 25 25 PHE D 104 ASN D 111 1 8 HELIX 26 26 THR D 115 GLY D 126 1 12 HELIX 27 27 PRO D 139 CYS D 143 5 5 HELIX 28 28 GLN D 150 GLY D 168 1 19 SHEET 1 A 2 GLY B 126 LYS B 127 0 SHEET 2 A 2 MET B 130 PRO B 131 -1 O MET B 130 N LYS B 127 SSBOND 1 CYS A 137 CYS A 143 1555 1555 2.02 SSBOND 2 CYS B 137 CYS B 143 1555 1555 2.03 SSBOND 3 CYS C 137 CYS C 143 1555 1555 2.04 SSBOND 4 CYS D 137 CYS D 143 1555 1555 2.04 LINK SG CYS A 86 CAB HEM A 200 1555 1555 1.67 LINK SG CYS A 89 CAC HEM A 200 1555 1555 1.67 LINK SG CYS B 86 CAB HEM B 200 1555 1555 1.66 LINK SG CYS B 89 CAC HEM B 200 1555 1555 1.65 LINK SG CYS C 86 CAB HEM C 200 1555 1555 1.66 LINK SG CYS C 89 CAC HEM C 200 1555 1555 1.68 LINK SG CYS D 86 CAB HEM D 200 1555 1555 1.67 LINK SG CYS D 89 CAC HEM D 200 1555 1555 1.67 LINK OD1 ASP A 74 ZN ZN A1001 1555 1555 2.00 LINK NE2 HIS A 90 FE HEM A 200 1555 1555 1.97 LINK SD MET A 130 FE HEM A 200 1555 1555 2.31 LINK OE2 GLU A 159 ZN ZN A1001 1555 1555 2.00 LINK ZN ZN A1001 OD2 ASP C 74 1555 1555 1.98 LINK ZN ZN A1001 OE2 GLU C 159 1555 1555 1.97 LINK OD2 ASP B 74 ZN ZN B1002 1555 1555 1.99 LINK NE2 HIS B 90 FE HEM B 200 1555 1555 1.93 LINK SD MET B 130 FE HEM B 200 1555 1555 2.32 LINK OE2 GLU B 159 ZN ZN B1002 1555 1555 1.98 LINK ZN ZN B1002 OD1 ASP D 74 1555 1555 1.98 LINK ZN ZN B1002 OE2 GLU D 159 1555 1555 1.97 LINK NE2 HIS C 90 FE HEM C 200 1555 1555 1.95 LINK SD MET C 130 FE HEM C 200 1555 1555 2.30 LINK NE2 HIS D 90 FE HEM D 200 1555 1555 1.93 LINK SD MET D 130 FE HEM D 200 1555 1555 2.31 CISPEP 1 THR A 138 PRO A 139 0 -5.24 CISPEP 2 THR B 138 PRO B 139 0 -2.80 CISPEP 3 THR C 138 PRO C 139 0 -8.28 CISPEP 4 THR D 138 PRO D 139 0 -2.04 SITE 1 AC1 5 ASP A 74 GLU A 159 ASP C 74 LYS C 155 SITE 2 AC1 5 GLU C 159 SITE 1 AC2 5 ASP B 74 GLU B 159 ASP D 74 LYS D 155 SITE 2 AC2 5 GLU D 159 SITE 1 AC3 16 CYS A 86 CYS A 89 HIS A 90 ASN A 95 SITE 2 AC3 16 ALA A 101 THR A 102 LEU A 103 ASP A 107 SITE 3 AC3 16 LEU A 108 ASN A 111 THR A 123 LYS A 127 SITE 4 AC3 16 MET A 130 HOH A1005 HOH A1010 HOH A1025 SITE 1 AC4 20 ALA B 85 CYS B 86 CYS B 89 HIS B 90 SITE 2 AC4 20 ASN B 95 ILE B 97 GLN B 98 ALA B 101 SITE 3 AC4 20 THR B 102 LEU B 103 ASP B 107 LEU B 108 SITE 4 AC4 20 ASN B 111 VAL B 113 THR B 123 LYS B 127 SITE 5 AC4 20 MET B 130 PHE B 133 HOH B1009 HOH B1020 SITE 1 AC5 21 ARG A 110 HOH A1002 ALA C 85 CYS C 86 SITE 2 AC5 21 CYS C 89 HIS C 90 ASN C 95 ALA C 101 SITE 3 AC5 21 THR C 102 LEU C 103 ASP C 107 LEU C 108 SITE 4 AC5 21 ASN C 111 VAL C 113 THR C 123 LYS C 127 SITE 5 AC5 21 MET C 130 PHE C 133 HOH C 223 GLY D 88 SITE 6 AC5 21 ILE D 96 SITE 1 AC6 21 ARG B 110 HOH B1012 HOH B1038 ILE C 96 SITE 2 AC6 21 ALA D 85 CYS D 86 CYS D 89 HIS D 90 SITE 3 AC6 21 ASN D 95 ALA D 101 THR D 102 LEU D 103 SITE 4 AC6 21 ASP D 107 LEU D 108 ASN D 111 VAL D 113 SITE 5 AC6 21 THR D 123 LYS D 127 MET D 130 PHE D 133 SITE 6 AC6 21 HOH D 207 CRYST1 50.443 51.843 53.685 82.51 62.08 63.26 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019824 -0.009988 -0.011582 0.00000 SCALE2 0.000000 0.021599 0.002210 0.00000 SCALE3 0.000000 0.000000 0.021191 0.00000