data_2DGP # _entry.id 2DGP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGP pdb_00002dgp 10.2210/pdb2dgp/pdb RCSB RCSB025397 ? ? WWPDB D_1000025397 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsi002003720.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGP _pdbx_database_status.recvd_initial_deposition_date 2006-03-15 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the N-terminal RNA binding domain in Bruno-like 4 RNA-binding protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Bruno-like 4, RNA binding protein' _entity.formula_weight 11588.144 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT LPGMNRPIQVKPADSESRGGSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT LPGMNRPIQVKPADSESRGGSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsi002003720.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 MET n 1 9 LYS n 1 10 ASP n 1 11 HIS n 1 12 ASP n 1 13 ALA n 1 14 ILE n 1 15 LYS n 1 16 LEU n 1 17 PHE n 1 18 ILE n 1 19 GLY n 1 20 GLN n 1 21 ILE n 1 22 PRO n 1 23 ARG n 1 24 ASN n 1 25 LEU n 1 26 ASP n 1 27 GLU n 1 28 LYS n 1 29 ASP n 1 30 LEU n 1 31 LYS n 1 32 PRO n 1 33 LEU n 1 34 PHE n 1 35 GLU n 1 36 GLU n 1 37 PHE n 1 38 GLY n 1 39 LYS n 1 40 ILE n 1 41 TYR n 1 42 GLU n 1 43 LEU n 1 44 THR n 1 45 VAL n 1 46 LEU n 1 47 LYS n 1 48 ASP n 1 49 ARG n 1 50 PHE n 1 51 THR n 1 52 GLY n 1 53 MET n 1 54 HIS n 1 55 LYS n 1 56 GLY n 1 57 CYS n 1 58 ALA n 1 59 PHE n 1 60 LEU n 1 61 THR n 1 62 TYR n 1 63 CYS n 1 64 GLU n 1 65 ARG n 1 66 GLU n 1 67 SER n 1 68 ALA n 1 69 LEU n 1 70 LYS n 1 71 ALA n 1 72 GLN n 1 73 SER n 1 74 ALA n 1 75 LEU n 1 76 HIS n 1 77 GLU n 1 78 GLN n 1 79 LYS n 1 80 THR n 1 81 LEU n 1 82 PRO n 1 83 GLY n 1 84 MET n 1 85 ASN n 1 86 ARG n 1 87 PRO n 1 88 ILE n 1 89 GLN n 1 90 VAL n 1 91 LYS n 1 92 PRO n 1 93 ALA n 1 94 ASP n 1 95 SER n 1 96 GLU n 1 97 SER n 1 98 ARG n 1 99 GLY n 1 100 GLY n 1 101 SER n 1 102 GLY n 1 103 PRO n 1 104 SER n 1 105 SER n 1 106 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene BRUNOL4 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050704-05 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9BQ96_HUMAN _struct_ref.pdbx_db_accession Q9BQ96 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 48 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DGP _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 101 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BQ96 _struct_ref_seq.db_align_beg 48 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 141 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 48 _struct_ref_seq.pdbx_auth_seq_align_end 141 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DGP GLY A 1 ? UNP Q9BQ96 ? ? 'cloning artifact' 41 1 1 2DGP SER A 2 ? UNP Q9BQ96 ? ? 'cloning artifact' 42 2 1 2DGP SER A 3 ? UNP Q9BQ96 ? ? 'cloning artifact' 43 3 1 2DGP GLY A 4 ? UNP Q9BQ96 ? ? 'cloning artifact' 44 4 1 2DGP SER A 5 ? UNP Q9BQ96 ? ? 'cloning artifact' 45 5 1 2DGP SER A 6 ? UNP Q9BQ96 ? ? 'cloning artifact' 46 6 1 2DGP GLY A 7 ? UNP Q9BQ96 ? ? 'cloning artifact' 47 7 1 2DGP GLY A 102 ? UNP Q9BQ96 ? ? 'cloning artifact' 142 8 1 2DGP PRO A 103 ? UNP Q9BQ96 ? ? 'cloning artifact' 143 9 1 2DGP SER A 104 ? UNP Q9BQ96 ? ? 'cloning artifact' 144 10 1 2DGP SER A 105 ? UNP Q9BQ96 ? ? 'cloning artifact' 145 11 1 2DGP GLY A 106 ? UNP Q9BQ96 ? ? 'cloning artifact' 146 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DGP _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DGP _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DGP _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0 'Guntert, P.' 5 refinement CYANA 2.0 'Guntert, P.' 6 # _exptl.entry_id 2DGP _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DGP _struct.title 'Solution structure of the N-terminal RNA binding domain in Bruno-like 4 RNA-binding protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGP _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 26 ? GLY A 38 ? ASP A 66 GLY A 78 1 ? 13 HELX_P HELX_P2 2 GLU A 64 ? HIS A 76 ? GLU A 104 HIS A 116 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 42 ? THR A 44 ? GLU A 82 THR A 84 A 2 CYS A 57 ? TYR A 62 ? CYS A 97 TYR A 102 A 3 ILE A 14 ? GLY A 19 ? ILE A 54 GLY A 59 A 4 GLN A 89 ? PRO A 92 ? GLN A 129 PRO A 132 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 44 ? N THR A 84 O PHE A 59 ? O PHE A 99 A 2 3 O LEU A 60 ? O LEU A 100 N LEU A 16 ? N LEU A 56 A 3 4 N PHE A 17 ? N PHE A 57 O LYS A 91 ? O LYS A 131 # _database_PDB_matrix.entry_id 2DGP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DGP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 41 41 GLY GLY A . n A 1 2 SER 2 42 42 SER SER A . n A 1 3 SER 3 43 43 SER SER A . n A 1 4 GLY 4 44 44 GLY GLY A . n A 1 5 SER 5 45 45 SER SER A . n A 1 6 SER 6 46 46 SER SER A . n A 1 7 GLY 7 47 47 GLY GLY A . n A 1 8 MET 8 48 48 MET MET A . n A 1 9 LYS 9 49 49 LYS LYS A . n A 1 10 ASP 10 50 50 ASP ASP A . n A 1 11 HIS 11 51 51 HIS HIS A . n A 1 12 ASP 12 52 52 ASP ASP A . n A 1 13 ALA 13 53 53 ALA ALA A . n A 1 14 ILE 14 54 54 ILE ILE A . n A 1 15 LYS 15 55 55 LYS LYS A . n A 1 16 LEU 16 56 56 LEU LEU A . n A 1 17 PHE 17 57 57 PHE PHE A . n A 1 18 ILE 18 58 58 ILE ILE A . n A 1 19 GLY 19 59 59 GLY GLY A . n A 1 20 GLN 20 60 60 GLN GLN A . n A 1 21 ILE 21 61 61 ILE ILE A . n A 1 22 PRO 22 62 62 PRO PRO A . n A 1 23 ARG 23 63 63 ARG ARG A . n A 1 24 ASN 24 64 64 ASN ASN A . n A 1 25 LEU 25 65 65 LEU LEU A . n A 1 26 ASP 26 66 66 ASP ASP A . n A 1 27 GLU 27 67 67 GLU GLU A . n A 1 28 LYS 28 68 68 LYS LYS A . n A 1 29 ASP 29 69 69 ASP ASP A . n A 1 30 LEU 30 70 70 LEU LEU A . n A 1 31 LYS 31 71 71 LYS LYS A . n A 1 32 PRO 32 72 72 PRO PRO A . n A 1 33 LEU 33 73 73 LEU LEU A . n A 1 34 PHE 34 74 74 PHE PHE A . n A 1 35 GLU 35 75 75 GLU GLU A . n A 1 36 GLU 36 76 76 GLU GLU A . n A 1 37 PHE 37 77 77 PHE PHE A . n A 1 38 GLY 38 78 78 GLY GLY A . n A 1 39 LYS 39 79 79 LYS LYS A . n A 1 40 ILE 40 80 80 ILE ILE A . n A 1 41 TYR 41 81 81 TYR TYR A . n A 1 42 GLU 42 82 82 GLU GLU A . n A 1 43 LEU 43 83 83 LEU LEU A . n A 1 44 THR 44 84 84 THR THR A . n A 1 45 VAL 45 85 85 VAL VAL A . n A 1 46 LEU 46 86 86 LEU LEU A . n A 1 47 LYS 47 87 87 LYS LYS A . n A 1 48 ASP 48 88 88 ASP ASP A . n A 1 49 ARG 49 89 89 ARG ARG A . n A 1 50 PHE 50 90 90 PHE PHE A . n A 1 51 THR 51 91 91 THR THR A . n A 1 52 GLY 52 92 92 GLY GLY A . n A 1 53 MET 53 93 93 MET MET A . n A 1 54 HIS 54 94 94 HIS HIS A . n A 1 55 LYS 55 95 95 LYS LYS A . n A 1 56 GLY 56 96 96 GLY GLY A . n A 1 57 CYS 57 97 97 CYS CYS A . n A 1 58 ALA 58 98 98 ALA ALA A . n A 1 59 PHE 59 99 99 PHE PHE A . n A 1 60 LEU 60 100 100 LEU LEU A . n A 1 61 THR 61 101 101 THR THR A . n A 1 62 TYR 62 102 102 TYR TYR A . n A 1 63 CYS 63 103 103 CYS CYS A . n A 1 64 GLU 64 104 104 GLU GLU A . n A 1 65 ARG 65 105 105 ARG ARG A . n A 1 66 GLU 66 106 106 GLU GLU A . n A 1 67 SER 67 107 107 SER SER A . n A 1 68 ALA 68 108 108 ALA ALA A . n A 1 69 LEU 69 109 109 LEU LEU A . n A 1 70 LYS 70 110 110 LYS LYS A . n A 1 71 ALA 71 111 111 ALA ALA A . n A 1 72 GLN 72 112 112 GLN GLN A . n A 1 73 SER 73 113 113 SER SER A . n A 1 74 ALA 74 114 114 ALA ALA A . n A 1 75 LEU 75 115 115 LEU LEU A . n A 1 76 HIS 76 116 116 HIS HIS A . n A 1 77 GLU 77 117 117 GLU GLU A . n A 1 78 GLN 78 118 118 GLN GLN A . n A 1 79 LYS 79 119 119 LYS LYS A . n A 1 80 THR 80 120 120 THR THR A . n A 1 81 LEU 81 121 121 LEU LEU A . n A 1 82 PRO 82 122 122 PRO PRO A . n A 1 83 GLY 83 123 123 GLY GLY A . n A 1 84 MET 84 124 124 MET MET A . n A 1 85 ASN 85 125 125 ASN ASN A . n A 1 86 ARG 86 126 126 ARG ARG A . n A 1 87 PRO 87 127 127 PRO PRO A . n A 1 88 ILE 88 128 128 ILE ILE A . n A 1 89 GLN 89 129 129 GLN GLN A . n A 1 90 VAL 90 130 130 VAL VAL A . n A 1 91 LYS 91 131 131 LYS LYS A . n A 1 92 PRO 92 132 132 PRO PRO A . n A 1 93 ALA 93 133 133 ALA ALA A . n A 1 94 ASP 94 134 134 ASP ASP A . n A 1 95 SER 95 135 135 SER SER A . n A 1 96 GLU 96 136 136 GLU GLU A . n A 1 97 SER 97 137 137 SER SER A . n A 1 98 ARG 98 138 138 ARG ARG A . n A 1 99 GLY 99 139 139 GLY GLY A . n A 1 100 GLY 100 140 140 GLY GLY A . n A 1 101 SER 101 141 141 SER SER A . n A 1 102 GLY 102 142 142 GLY GLY A . n A 1 103 PRO 103 143 143 PRO PRO A . n A 1 104 SER 104 144 144 SER SER A . n A 1 105 SER 105 145 145 SER SER A . n A 1 106 GLY 106 146 146 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-15 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 60 ? ? 72.22 42.89 2 1 ARG A 63 ? ? -86.73 41.97 3 1 LEU A 86 ? ? -49.52 103.98 4 1 PHE A 90 ? ? -105.89 -71.63 5 1 MET A 93 ? ? -33.86 -36.96 6 1 LYS A 95 ? ? -83.34 35.76 7 1 HIS A 116 ? ? -34.88 137.40 8 1 GLU A 117 ? ? 34.63 37.36 9 1 PRO A 127 ? ? -69.70 -178.44 10 1 ALA A 133 ? ? -79.29 48.80 11 2 SER A 46 ? ? -56.31 173.46 12 2 HIS A 51 ? ? -36.17 -36.29 13 2 ARG A 63 ? ? -88.63 42.35 14 2 LEU A 73 ? ? -43.76 -70.61 15 2 ILE A 80 ? ? -40.20 162.01 16 2 TYR A 81 ? ? -131.95 -35.89 17 2 GLU A 82 ? ? -166.73 114.32 18 2 LEU A 86 ? ? -39.03 113.57 19 2 PHE A 90 ? ? -120.35 -73.03 20 2 LYS A 95 ? ? -49.50 151.74 21 2 GLN A 118 ? ? -130.59 -43.45 22 2 PRO A 127 ? ? -69.69 -177.51 23 2 ALA A 133 ? ? -37.47 -36.18 24 2 SER A 135 ? ? -173.22 116.45 25 2 ARG A 138 ? ? 36.09 43.57 26 2 SER A 144 ? ? -82.60 44.66 27 3 LYS A 49 ? ? -34.79 140.56 28 3 ASP A 50 ? ? -108.02 -60.43 29 3 HIS A 51 ? ? -98.69 -60.63 30 3 ASP A 52 ? ? -171.12 148.93 31 3 ARG A 63 ? ? -81.58 40.18 32 3 LEU A 73 ? ? -42.89 -72.14 33 3 GLU A 82 ? ? -170.74 114.34 34 3 LEU A 86 ? ? -45.05 101.07 35 3 PHE A 90 ? ? -106.66 -64.49 36 3 THR A 91 ? ? -134.36 -33.30 37 3 MET A 93 ? ? -35.23 -39.90 38 3 LYS A 95 ? ? -91.27 36.50 39 3 PRO A 127 ? ? -69.82 -176.57 40 3 PRO A 143 ? ? -69.74 97.00 41 4 HIS A 51 ? ? -121.83 -56.64 42 4 ARG A 63 ? ? -79.92 43.03 43 4 LEU A 73 ? ? -42.98 -71.82 44 4 GLU A 75 ? ? -36.00 -30.47 45 4 ILE A 80 ? ? -36.19 146.48 46 4 GLU A 82 ? ? -167.84 112.86 47 4 MET A 93 ? ? -53.97 101.64 48 4 LEU A 121 ? ? -41.62 150.80 49 4 PRO A 127 ? ? -69.74 -172.92 50 4 SER A 137 ? ? -126.70 -54.09 51 5 SER A 46 ? ? -39.84 149.49 52 5 ARG A 63 ? ? -81.27 41.29 53 5 LEU A 73 ? ? -41.86 -72.21 54 5 GLU A 75 ? ? -39.18 -29.64 55 5 ILE A 80 ? ? -39.80 149.43 56 5 GLU A 82 ? ? -162.70 113.07 57 5 LEU A 86 ? ? -53.41 104.58 58 5 THR A 91 ? ? -131.91 -31.65 59 5 GLU A 117 ? ? 39.21 38.48 60 5 PRO A 127 ? ? -69.77 -178.90 61 5 ALA A 133 ? ? -69.80 80.96 62 5 SER A 137 ? ? -82.11 44.69 63 5 PRO A 143 ? ? -69.84 1.07 64 6 ASP A 50 ? ? -34.34 109.07 65 6 ARG A 63 ? ? -80.01 41.39 66 6 LEU A 73 ? ? -43.91 -72.13 67 6 ILE A 80 ? ? -37.98 149.82 68 6 GLU A 82 ? ? -165.95 112.97 69 6 ASP A 88 ? ? -49.71 179.62 70 6 PHE A 90 ? ? -111.39 -70.25 71 6 MET A 93 ? ? -53.13 101.91 72 6 HIS A 94 ? ? 74.21 55.04 73 6 LYS A 110 ? ? -41.91 -70.21 74 6 LEU A 121 ? ? -46.99 152.54 75 6 PRO A 127 ? ? -69.75 -174.53 76 6 GLU A 136 ? ? -84.82 42.82 77 7 LYS A 49 ? ? -58.88 101.76 78 7 ASP A 52 ? ? -174.38 132.30 79 7 ARG A 63 ? ? -84.57 42.08 80 7 LEU A 73 ? ? -37.70 -72.62 81 7 GLU A 75 ? ? -36.52 -28.95 82 7 GLU A 82 ? ? -168.26 112.87 83 7 PHE A 90 ? ? -104.55 -74.64 84 7 LYS A 110 ? ? -44.82 -70.06 85 7 PRO A 127 ? ? -69.75 -179.95 86 7 ASP A 134 ? ? -41.62 158.96 87 7 PRO A 143 ? ? -69.70 86.01 88 7 SER A 144 ? ? -92.61 59.42 89 8 ASP A 52 ? ? -47.92 100.16 90 8 ARG A 63 ? ? -79.54 43.15 91 8 LEU A 73 ? ? -42.15 -72.81 92 8 GLU A 75 ? ? -37.16 -28.25 93 8 LYS A 79 ? ? -65.68 80.36 94 8 ILE A 80 ? ? -36.86 151.21 95 8 GLU A 82 ? ? -160.32 112.91 96 8 PHE A 90 ? ? -100.32 -68.97 97 8 MET A 93 ? ? -36.50 -29.81 98 8 HIS A 94 ? ? -163.97 111.05 99 8 PRO A 143 ? ? -69.78 99.01 100 9 SER A 43 ? ? -43.72 109.92 101 9 ASP A 52 ? ? -56.13 102.49 102 9 ARG A 63 ? ? -85.05 42.56 103 9 LEU A 73 ? ? -39.80 -72.74 104 9 GLU A 75 ? ? -39.69 -27.05 105 9 ILE A 80 ? ? -49.51 155.77 106 9 GLU A 82 ? ? -172.03 112.87 107 9 LEU A 86 ? ? -51.18 109.59 108 9 GLN A 112 ? ? -58.24 -70.35 109 9 GLN A 118 ? ? -131.65 -33.71 110 9 LEU A 121 ? ? -48.35 151.32 111 9 PRO A 127 ? ? -69.70 -178.21 112 9 ALA A 133 ? ? -53.87 84.69 113 9 SER A 144 ? ? -171.03 148.57 114 10 SER A 42 ? ? -52.42 98.96 115 10 MET A 48 ? ? -80.47 -72.13 116 10 ASP A 52 ? ? -173.12 142.06 117 10 ARG A 63 ? ? -98.34 44.87 118 10 LEU A 73 ? ? -41.96 -72.75 119 10 GLU A 82 ? ? -171.58 112.85 120 10 ASP A 88 ? ? -66.43 -179.45 121 10 PHE A 90 ? ? -128.86 -71.51 122 10 GLU A 117 ? ? 38.75 36.02 123 10 LEU A 121 ? ? -41.39 152.94 124 10 PRO A 127 ? ? -69.74 -169.52 125 11 SER A 43 ? ? -172.18 118.27 126 11 MET A 48 ? ? -174.00 121.51 127 11 ALA A 53 ? ? -36.41 151.93 128 11 PRO A 62 ? ? -69.78 -176.80 129 11 LEU A 73 ? ? -44.62 -72.44 130 11 ILE A 80 ? ? -48.71 160.09 131 11 GLU A 82 ? ? -169.76 112.63 132 11 PHE A 90 ? ? -107.91 -74.43 133 11 MET A 93 ? ? -30.99 -37.51 134 11 GLU A 117 ? ? 39.92 47.19 135 11 GLN A 118 ? ? -130.49 -51.82 136 12 MET A 48 ? ? -162.94 109.28 137 12 LYS A 49 ? ? -44.90 162.65 138 12 PRO A 62 ? ? -69.79 -168.24 139 12 LEU A 73 ? ? -45.33 -71.87 140 12 ILE A 80 ? ? -36.50 143.16 141 12 LEU A 86 ? ? -56.08 92.68 142 12 PHE A 90 ? ? -116.94 -70.43 143 12 MET A 93 ? ? -34.07 -38.83 144 12 HIS A 116 ? ? -35.45 128.15 145 12 GLU A 117 ? ? 39.55 46.91 146 12 GLN A 118 ? ? -133.99 -53.70 147 12 PRO A 127 ? ? -69.77 -179.42 148 12 SER A 144 ? ? -39.72 149.74 149 13 ASP A 52 ? ? -64.44 90.02 150 13 ARG A 63 ? ? -92.93 44.26 151 13 LEU A 73 ? ? -38.78 -73.97 152 13 GLU A 75 ? ? -36.17 -30.13 153 13 GLU A 82 ? ? -160.85 112.76 154 13 LEU A 86 ? ? -48.78 100.99 155 13 PHE A 90 ? ? -105.03 -69.55 156 13 GLN A 118 ? ? -134.93 -42.24 157 14 GLN A 60 ? ? 71.10 45.30 158 14 ARG A 63 ? ? -80.94 41.15 159 14 LEU A 73 ? ? -43.28 -72.32 160 14 ILE A 80 ? ? -44.13 154.24 161 14 GLU A 82 ? ? -164.02 112.74 162 14 PHE A 90 ? ? -121.25 -75.04 163 14 MET A 93 ? ? -35.77 -36.58 164 14 GLU A 117 ? ? 36.22 33.88 165 15 ARG A 63 ? ? -79.52 42.17 166 15 LEU A 73 ? ? -40.31 -70.67 167 15 GLU A 75 ? ? -37.79 -35.74 168 15 ILE A 80 ? ? -41.38 152.99 169 15 GLU A 82 ? ? -168.44 113.10 170 15 LEU A 86 ? ? -55.06 104.27 171 15 PHE A 90 ? ? -105.28 -75.27 172 15 MET A 93 ? ? -59.94 97.11 173 15 HIS A 94 ? ? 71.64 54.93 174 15 LYS A 110 ? ? -54.73 -70.18 175 15 GLU A 117 ? ? 36.38 40.33 176 15 GLU A 136 ? ? 34.45 39.03 177 16 SER A 42 ? ? -134.87 -53.61 178 16 ARG A 63 ? ? -79.53 43.38 179 16 LEU A 73 ? ? -52.55 -72.77 180 16 LEU A 86 ? ? -37.19 109.50 181 16 PHE A 90 ? ? -134.98 -73.64 182 16 THR A 91 ? ? -135.04 -39.34 183 16 MET A 93 ? ? -36.74 119.47 184 16 HIS A 94 ? ? 70.75 54.91 185 16 SER A 107 ? ? -39.55 -37.01 186 16 GLU A 117 ? ? 35.66 45.22 187 16 GLN A 118 ? ? -133.69 -42.11 188 16 PRO A 127 ? ? -69.72 -175.35 189 16 ALA A 133 ? ? -63.29 90.08 190 16 ASP A 134 ? ? -118.22 76.44 191 17 ARG A 63 ? ? -86.54 42.50 192 17 GLU A 75 ? ? -37.13 -33.98 193 17 ILE A 80 ? ? -37.92 157.55 194 17 GLU A 82 ? ? -171.90 113.18 195 17 PHE A 90 ? ? -112.08 -71.93 196 17 GLN A 118 ? ? -133.69 -39.49 197 17 SER A 135 ? ? -161.55 111.46 198 18 SER A 43 ? ? 37.92 42.24 199 18 MET A 48 ? ? -171.66 142.29 200 18 PRO A 62 ? ? -69.86 -172.39 201 18 LEU A 73 ? ? -38.28 -73.01 202 18 GLU A 75 ? ? -35.75 -31.97 203 18 ILE A 80 ? ? -41.63 153.43 204 18 GLU A 82 ? ? -174.89 112.76 205 18 PHE A 90 ? ? -109.88 -65.52 206 18 THR A 91 ? ? -133.54 -31.99 207 18 MET A 93 ? ? -52.36 94.40 208 18 HIS A 94 ? ? 71.23 53.87 209 18 GLU A 117 ? ? 37.15 45.11 210 18 GLN A 118 ? ? -130.20 -47.57 211 18 PRO A 127 ? ? -69.77 -167.43 212 19 ARG A 63 ? ? -80.95 41.99 213 19 LEU A 73 ? ? -42.10 -74.77 214 19 GLU A 82 ? ? -167.57 114.08 215 19 LEU A 86 ? ? -65.29 85.22 216 19 THR A 91 ? ? -133.17 -41.01 217 19 MET A 93 ? ? -59.50 109.52 218 19 GLN A 112 ? ? -70.18 -71.24 219 19 GLN A 118 ? ? -133.48 -45.99 220 19 PRO A 127 ? ? -69.77 -169.93 221 19 SER A 144 ? ? -95.37 41.67 222 20 SER A 42 ? ? -52.99 174.44 223 20 SER A 43 ? ? -122.13 -61.08 224 20 ASP A 52 ? ? -54.46 98.12 225 20 GLN A 60 ? ? 34.83 38.93 226 20 ARG A 63 ? ? -87.78 42.57 227 20 LEU A 73 ? ? -45.54 -72.44 228 20 LYS A 79 ? ? -69.39 82.01 229 20 ILE A 80 ? ? -41.23 153.83 230 20 LEU A 86 ? ? -41.42 91.94 231 20 PHE A 90 ? ? -114.91 -73.47 232 20 MET A 93 ? ? -35.43 -32.74 233 20 PRO A 127 ? ? -69.81 -167.22 234 20 ALA A 133 ? ? -41.68 97.26 235 20 PRO A 143 ? ? -69.77 -176.46 #