HEADER RNA BINDING PROTEIN 15-MAR-06 2DGP TITLE SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING DOMAIN IN BRUNO-LIKE TITLE 2 4 RNA-BINDING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRUNO-LIKE 4, RNA BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA RECOGNITION MOTIF; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRUNOL4; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050704-05; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RRM DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 2 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 3 GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DGP 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DGP 1 VERSN REVDAT 1 15-SEP-06 2DGP 0 JRNL AUTH C.ABE,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA,M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE N-TERMINAL RNA BINDING DOMAIN IN JRNL TITL 2 BRUNO-LIKE 4 RNA-BINDING PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.5, CYANA 2.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DGP COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025397. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0), 100MM REMARK 210 NACL, 1MM D-DTT, 0.02% NAN3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.932, CYANA 2.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LOWEST ENERGY, STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 60 42.89 72.22 REMARK 500 1 ARG A 63 41.97 -86.73 REMARK 500 1 LEU A 86 103.98 -49.52 REMARK 500 1 PHE A 90 -71.63 -105.89 REMARK 500 1 MET A 93 -36.96 -33.86 REMARK 500 1 LYS A 95 35.76 -83.34 REMARK 500 1 HIS A 116 137.40 -34.88 REMARK 500 1 GLU A 117 37.36 34.63 REMARK 500 1 PRO A 127 -178.44 -69.70 REMARK 500 1 ALA A 133 48.80 -79.29 REMARK 500 2 SER A 46 173.46 -56.31 REMARK 500 2 HIS A 51 -36.29 -36.17 REMARK 500 2 ARG A 63 42.35 -88.63 REMARK 500 2 LEU A 73 -70.61 -43.76 REMARK 500 2 ILE A 80 162.01 -40.20 REMARK 500 2 TYR A 81 -35.89 -131.95 REMARK 500 2 GLU A 82 114.32 -166.73 REMARK 500 2 LEU A 86 113.57 -39.03 REMARK 500 2 PHE A 90 -73.03 -120.35 REMARK 500 2 LYS A 95 151.74 -49.50 REMARK 500 2 GLN A 118 -43.45 -130.59 REMARK 500 2 PRO A 127 -177.51 -69.69 REMARK 500 2 ALA A 133 -36.18 -37.47 REMARK 500 2 SER A 135 116.45 -173.22 REMARK 500 2 ARG A 138 43.57 36.09 REMARK 500 2 SER A 144 44.66 -82.60 REMARK 500 3 LYS A 49 140.56 -34.79 REMARK 500 3 ASP A 50 -60.43 -108.02 REMARK 500 3 HIS A 51 -60.63 -98.69 REMARK 500 3 ASP A 52 148.93 -171.12 REMARK 500 3 ARG A 63 40.18 -81.58 REMARK 500 3 LEU A 73 -72.14 -42.89 REMARK 500 3 GLU A 82 114.34 -170.74 REMARK 500 3 LEU A 86 101.07 -45.05 REMARK 500 3 PHE A 90 -64.49 -106.66 REMARK 500 3 THR A 91 -33.30 -134.36 REMARK 500 3 MET A 93 -39.90 -35.23 REMARK 500 3 LYS A 95 36.50 -91.27 REMARK 500 3 PRO A 127 -176.57 -69.82 REMARK 500 3 PRO A 143 97.00 -69.74 REMARK 500 4 HIS A 51 -56.64 -121.83 REMARK 500 4 ARG A 63 43.03 -79.92 REMARK 500 4 LEU A 73 -71.82 -42.98 REMARK 500 4 GLU A 75 -30.47 -36.00 REMARK 500 4 ILE A 80 146.48 -36.19 REMARK 500 4 GLU A 82 112.86 -167.84 REMARK 500 4 MET A 93 101.64 -53.97 REMARK 500 4 LEU A 121 150.80 -41.62 REMARK 500 4 PRO A 127 -172.92 -69.74 REMARK 500 4 SER A 137 -54.09 -126.70 REMARK 500 REMARK 500 THIS ENTRY HAS 235 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSI002003720.1 RELATED DB: TARGETDB DBREF 2DGP A 48 141 UNP Q9BQ96 Q9BQ96_HUMAN 48 141 SEQADV 2DGP GLY A 41 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP SER A 42 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP SER A 43 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP GLY A 44 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP SER A 45 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP SER A 46 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP GLY A 47 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP GLY A 142 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP PRO A 143 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP SER A 144 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP SER A 145 UNP Q9BQ96 CLONING ARTIFACT SEQADV 2DGP GLY A 146 UNP Q9BQ96 CLONING ARTIFACT SEQRES 1 A 106 GLY SER SER GLY SER SER GLY MET LYS ASP HIS ASP ALA SEQRES 2 A 106 ILE LYS LEU PHE ILE GLY GLN ILE PRO ARG ASN LEU ASP SEQRES 3 A 106 GLU LYS ASP LEU LYS PRO LEU PHE GLU GLU PHE GLY LYS SEQRES 4 A 106 ILE TYR GLU LEU THR VAL LEU LYS ASP ARG PHE THR GLY SEQRES 5 A 106 MET HIS LYS GLY CYS ALA PHE LEU THR TYR CYS GLU ARG SEQRES 6 A 106 GLU SER ALA LEU LYS ALA GLN SER ALA LEU HIS GLU GLN SEQRES 7 A 106 LYS THR LEU PRO GLY MET ASN ARG PRO ILE GLN VAL LYS SEQRES 8 A 106 PRO ALA ASP SER GLU SER ARG GLY GLY SER GLY PRO SER SEQRES 9 A 106 SER GLY HELIX 1 1 ASP A 66 GLY A 78 1 13 HELIX 2 2 GLU A 104 HIS A 116 1 13 SHEET 1 A 4 GLU A 82 THR A 84 0 SHEET 2 A 4 CYS A 97 TYR A 102 -1 O PHE A 99 N THR A 84 SHEET 3 A 4 ILE A 54 GLY A 59 -1 N LEU A 56 O LEU A 100 SHEET 4 A 4 GLN A 129 PRO A 132 -1 O LYS A 131 N PHE A 57 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1