data_2DGV # _entry.id 2DGV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DGV pdb_00002dgv 10.2210/pdb2dgv/pdb RCSB RCSB025403 ? ? WWPDB D_1000025403 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk003002075.3 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DGV _pdbx_database_status.recvd_initial_deposition_date 2006-03-16 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Abe, C.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Terada, T.' 5 'Shirouzu, M.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the RNA binding domain in Heterogeneous nuclear ribonucleoprotein M' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, C.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Terada, T.' 5 ? primary 'Shirouzu, M.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Heterogeneous nuclear ribonucleoprotein M' _entity.formula_weight 10081.561 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'RNA recognition motif' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'hnRNP M' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV RIDRNASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV RIDRNASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk003002075.3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ALA n 1 9 CYS n 1 10 GLN n 1 11 ILE n 1 12 PHE n 1 13 VAL n 1 14 ARG n 1 15 ASN n 1 16 LEU n 1 17 PRO n 1 18 PHE n 1 19 ASP n 1 20 PHE n 1 21 THR n 1 22 TRP n 1 23 LYS n 1 24 MET n 1 25 LEU n 1 26 LYS n 1 27 ASP n 1 28 LYS n 1 29 PHE n 1 30 ASN n 1 31 GLU n 1 32 CYS n 1 33 GLY n 1 34 HIS n 1 35 VAL n 1 36 LEU n 1 37 TYR n 1 38 ALA n 1 39 ASP n 1 40 ILE n 1 41 LYS n 1 42 MET n 1 43 GLU n 1 44 ASN n 1 45 GLY n 1 46 LYS n 1 47 SER n 1 48 LYS n 1 49 GLY n 1 50 CYS n 1 51 GLY n 1 52 VAL n 1 53 VAL n 1 54 LYS n 1 55 PHE n 1 56 GLU n 1 57 SER n 1 58 PRO n 1 59 GLU n 1 60 VAL n 1 61 ALA n 1 62 GLU n 1 63 ARG n 1 64 ALA n 1 65 CYS n 1 66 ARG n 1 67 MET n 1 68 MET n 1 69 ASN n 1 70 GLY n 1 71 MET n 1 72 LYS n 1 73 LEU n 1 74 SER n 1 75 GLY n 1 76 ARG n 1 77 GLU n 1 78 ILE n 1 79 ASP n 1 80 VAL n 1 81 ARG n 1 82 ILE n 1 83 ASP n 1 84 ARG n 1 85 ASN n 1 86 ALA n 1 87 SER n 1 88 GLY n 1 89 PRO n 1 90 SER n 1 91 SER n 1 92 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'HNRP M' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P051121-03 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code HNRPM_HUMAN _struct_ref.pdbx_db_accession P52272 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 651 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DGV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 86 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P52272 _struct_ref_seq.db_align_beg 651 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 729 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 651 _struct_ref_seq.pdbx_auth_seq_align_end 729 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DGV GLY A 1 ? UNP P52272 ? ? 'cloning artifact' 644 1 1 2DGV SER A 2 ? UNP P52272 ? ? 'cloning artifact' 645 2 1 2DGV SER A 3 ? UNP P52272 ? ? 'cloning artifact' 646 3 1 2DGV GLY A 4 ? UNP P52272 ? ? 'cloning artifact' 647 4 1 2DGV SER A 5 ? UNP P52272 ? ? 'cloning artifact' 648 5 1 2DGV SER A 6 ? UNP P52272 ? ? 'cloning artifact' 649 6 1 2DGV GLY A 7 ? UNP P52272 ? ? 'cloning artifact' 650 7 1 2DGV SER A 87 ? UNP P52272 ? ? 'cloning artifact' 730 8 1 2DGV GLY A 88 ? UNP P52272 ? ? 'cloning artifact' 731 9 1 2DGV PRO A 89 ? UNP P52272 ? ? 'cloning artifact' 732 10 1 2DGV SER A 90 ? UNP P52272 ? ? 'cloning artifact' 733 11 1 2DGV SER A 91 ? UNP P52272 ? ? 'cloning artifact' 734 12 1 2DGV GLY A 92 ? UNP P52272 ? ? 'cloning artifact' 735 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 100mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DGV _pdbx_nmr_refine.method 'torsion angle dynamics, restrainted molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DGV _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DGV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 3.5 Bruker 1 processing NMRPipe 20030801 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.932 'Kobayashi, N.' 4 'structure solution' CYANA 2.0 'Guntert, P.' 5 refinement CYANA 2.0 'Guntert, P.' 6 # _exptl.entry_id 2DGV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DGV _struct.title 'Solution structure of the RNA binding domain in Heterogeneous nuclear ribonucleoprotein M' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DGV _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;RRM domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 21 ? GLU A 31 ? THR A 664 GLU A 674 1 ? 11 HELX_P HELX_P2 2 SER A 57 ? ASN A 69 ? SER A 700 ASN A 712 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 35 ? MET A 42 ? VAL A 678 MET A 685 A 2 SER A 47 ? PHE A 55 ? SER A 690 PHE A 698 A 3 GLN A 10 ? VAL A 13 ? GLN A 653 VAL A 656 A 4 ARG A 81 ? ILE A 82 ? ARG A 724 ILE A 725 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 36 ? N LEU A 679 O LYS A 54 ? O LYS A 697 A 2 3 O GLY A 51 ? O GLY A 694 N VAL A 13 ? N VAL A 656 A 3 4 N PHE A 12 ? N PHE A 655 O ARG A 81 ? O ARG A 724 # _database_PDB_matrix.entry_id 2DGV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DGV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 644 644 GLY GLY A . n A 1 2 SER 2 645 645 SER SER A . n A 1 3 SER 3 646 646 SER SER A . n A 1 4 GLY 4 647 647 GLY GLY A . n A 1 5 SER 5 648 648 SER SER A . n A 1 6 SER 6 649 649 SER SER A . n A 1 7 GLY 7 650 650 GLY GLY A . n A 1 8 ALA 8 651 651 ALA ALA A . n A 1 9 CYS 9 652 652 CYS CYS A . n A 1 10 GLN 10 653 653 GLN GLN A . n A 1 11 ILE 11 654 654 ILE ILE A . n A 1 12 PHE 12 655 655 PHE PHE A . n A 1 13 VAL 13 656 656 VAL VAL A . n A 1 14 ARG 14 657 657 ARG ARG A . n A 1 15 ASN 15 658 658 ASN ASN A . n A 1 16 LEU 16 659 659 LEU LEU A . n A 1 17 PRO 17 660 660 PRO PRO A . n A 1 18 PHE 18 661 661 PHE PHE A . n A 1 19 ASP 19 662 662 ASP ASP A . n A 1 20 PHE 20 663 663 PHE PHE A . n A 1 21 THR 21 664 664 THR THR A . n A 1 22 TRP 22 665 665 TRP TRP A . n A 1 23 LYS 23 666 666 LYS LYS A . n A 1 24 MET 24 667 667 MET MET A . n A 1 25 LEU 25 668 668 LEU LEU A . n A 1 26 LYS 26 669 669 LYS LYS A . n A 1 27 ASP 27 670 670 ASP ASP A . n A 1 28 LYS 28 671 671 LYS LYS A . n A 1 29 PHE 29 672 672 PHE PHE A . n A 1 30 ASN 30 673 673 ASN ASN A . n A 1 31 GLU 31 674 674 GLU GLU A . n A 1 32 CYS 32 675 675 CYS CYS A . n A 1 33 GLY 33 676 676 GLY GLY A . n A 1 34 HIS 34 677 677 HIS HIS A . n A 1 35 VAL 35 678 678 VAL VAL A . n A 1 36 LEU 36 679 679 LEU LEU A . n A 1 37 TYR 37 680 680 TYR TYR A . n A 1 38 ALA 38 681 681 ALA ALA A . n A 1 39 ASP 39 682 682 ASP ASP A . n A 1 40 ILE 40 683 683 ILE ILE A . n A 1 41 LYS 41 684 684 LYS LYS A . n A 1 42 MET 42 685 685 MET MET A . n A 1 43 GLU 43 686 686 GLU GLU A . n A 1 44 ASN 44 687 687 ASN ASN A . n A 1 45 GLY 45 688 688 GLY GLY A . n A 1 46 LYS 46 689 689 LYS LYS A . n A 1 47 SER 47 690 690 SER SER A . n A 1 48 LYS 48 691 691 LYS LYS A . n A 1 49 GLY 49 692 692 GLY GLY A . n A 1 50 CYS 50 693 693 CYS CYS A . n A 1 51 GLY 51 694 694 GLY GLY A . n A 1 52 VAL 52 695 695 VAL VAL A . n A 1 53 VAL 53 696 696 VAL VAL A . n A 1 54 LYS 54 697 697 LYS LYS A . n A 1 55 PHE 55 698 698 PHE PHE A . n A 1 56 GLU 56 699 699 GLU GLU A . n A 1 57 SER 57 700 700 SER SER A . n A 1 58 PRO 58 701 701 PRO PRO A . n A 1 59 GLU 59 702 702 GLU GLU A . n A 1 60 VAL 60 703 703 VAL VAL A . n A 1 61 ALA 61 704 704 ALA ALA A . n A 1 62 GLU 62 705 705 GLU GLU A . n A 1 63 ARG 63 706 706 ARG ARG A . n A 1 64 ALA 64 707 707 ALA ALA A . n A 1 65 CYS 65 708 708 CYS CYS A . n A 1 66 ARG 66 709 709 ARG ARG A . n A 1 67 MET 67 710 710 MET MET A . n A 1 68 MET 68 711 711 MET MET A . n A 1 69 ASN 69 712 712 ASN ASN A . n A 1 70 GLY 70 713 713 GLY GLY A . n A 1 71 MET 71 714 714 MET MET A . n A 1 72 LYS 72 715 715 LYS LYS A . n A 1 73 LEU 73 716 716 LEU LEU A . n A 1 74 SER 74 717 717 SER SER A . n A 1 75 GLY 75 718 718 GLY GLY A . n A 1 76 ARG 76 719 719 ARG ARG A . n A 1 77 GLU 77 720 720 GLU GLU A . n A 1 78 ILE 78 721 721 ILE ILE A . n A 1 79 ASP 79 722 722 ASP ASP A . n A 1 80 VAL 80 723 723 VAL VAL A . n A 1 81 ARG 81 724 724 ARG ARG A . n A 1 82 ILE 82 725 725 ILE ILE A . n A 1 83 ASP 83 726 726 ASP ASP A . n A 1 84 ARG 84 727 727 ARG ARG A . n A 1 85 ASN 85 728 728 ASN ASN A . n A 1 86 ALA 86 729 729 ALA ALA A . n A 1 87 SER 87 730 730 SER SER A . n A 1 88 GLY 88 731 731 GLY GLY A . n A 1 89 PRO 89 732 732 PRO PRO A . n A 1 90 SER 90 733 733 SER SER A . n A 1 91 SER 91 734 734 SER SER A . n A 1 92 GLY 92 735 735 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-16 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 669 ? ? -65.20 -74.15 2 1 LEU A 679 ? ? -107.30 -61.53 3 1 ASN A 712 ? ? -54.22 109.72 4 1 LYS A 715 ? ? -51.94 101.15 5 1 ASN A 728 ? ? -114.36 71.36 6 2 ASN A 658 ? ? 71.17 50.17 7 2 PHE A 663 ? ? -38.85 128.40 8 2 LYS A 669 ? ? -60.66 -74.20 9 2 LEU A 679 ? ? -107.47 -61.85 10 2 ASN A 687 ? ? 70.98 48.68 11 2 SER A 690 ? ? -37.69 128.30 12 2 ASN A 712 ? ? -39.79 112.27 13 2 LYS A 715 ? ? -54.07 99.13 14 2 ALA A 729 ? ? -131.38 -49.65 15 2 PRO A 732 ? ? -69.77 93.83 16 3 SER A 648 ? ? -42.38 158.08 17 3 PHE A 663 ? ? -37.60 140.03 18 3 LYS A 669 ? ? -64.76 -73.69 19 3 LEU A 679 ? ? -100.50 -64.42 20 3 ALA A 707 ? ? -39.61 -34.95 21 3 MET A 714 ? ? -61.34 97.15 22 3 LYS A 715 ? ? -54.08 101.50 23 3 SER A 717 ? ? 37.64 41.34 24 3 SER A 733 ? ? -35.38 110.72 25 4 PHE A 663 ? ? -35.74 124.92 26 4 LYS A 669 ? ? -65.47 -74.92 27 4 SER A 717 ? ? 36.66 38.73 28 5 PHE A 663 ? ? -36.84 116.59 29 5 LYS A 669 ? ? -65.49 -73.12 30 5 SER A 690 ? ? -35.26 137.56 31 5 MET A 714 ? ? -69.28 94.07 32 5 LYS A 715 ? ? -51.13 98.92 33 5 SER A 717 ? ? 36.51 38.93 34 5 SER A 730 ? ? -122.16 -67.90 35 5 PRO A 732 ? ? -69.72 0.28 36 5 SER A 733 ? ? -34.59 98.95 37 6 SER A 646 ? ? -52.31 98.75 38 6 PHE A 663 ? ? -39.13 124.96 39 6 SER A 690 ? ? -41.09 154.16 40 6 MET A 714 ? ? -59.64 104.31 41 6 SER A 717 ? ? 36.70 39.70 42 6 ASN A 728 ? ? -96.18 56.74 43 6 PRO A 732 ? ? -69.74 -173.05 44 6 SER A 734 ? ? -169.83 114.66 45 7 ALA A 651 ? ? -69.60 74.78 46 7 CYS A 652 ? ? -97.14 47.20 47 7 ASN A 658 ? ? 70.66 52.12 48 7 LYS A 669 ? ? -62.49 -71.45 49 7 SER A 717 ? ? 36.93 38.62 50 7 ARG A 727 ? ? -81.65 40.79 51 7 SER A 730 ? ? -53.26 108.05 52 8 ASN A 658 ? ? 73.56 44.88 53 8 LYS A 669 ? ? -59.54 -74.07 54 8 SER A 690 ? ? -48.93 162.78 55 8 ASN A 712 ? ? -38.03 112.71 56 8 LYS A 715 ? ? -56.06 98.99 57 8 SER A 717 ? ? 38.86 38.49 58 9 ASN A 658 ? ? 71.28 51.57 59 9 PHE A 663 ? ? -36.31 119.91 60 9 LYS A 669 ? ? -60.54 -73.99 61 9 LEU A 679 ? ? -103.57 -60.16 62 9 ASN A 687 ? ? 70.93 39.36 63 9 MET A 714 ? ? -65.54 94.10 64 9 LYS A 715 ? ? -55.91 99.67 65 9 SER A 717 ? ? 35.92 36.41 66 9 SER A 733 ? ? -46.60 104.61 67 10 LYS A 669 ? ? -64.57 -74.79 68 10 GLU A 705 ? ? -39.34 -39.29 69 10 ALA A 707 ? ? -38.95 -29.32 70 10 SER A 717 ? ? 37.30 42.10 71 10 ALA A 729 ? ? -99.00 41.41 72 10 PRO A 732 ? ? -69.79 85.18 73 10 SER A 734 ? ? -53.66 171.74 74 11 SER A 645 ? ? -167.97 112.48 75 11 ASN A 658 ? ? 70.44 51.91 76 11 LYS A 669 ? ? -65.64 -74.41 77 11 LEU A 679 ? ? -97.11 -61.93 78 11 MET A 714 ? ? -49.38 99.09 79 11 LYS A 715 ? ? -56.05 102.56 80 12 SER A 649 ? ? -131.95 -53.63 81 12 LYS A 669 ? ? -60.72 -72.36 82 12 LYS A 715 ? ? -51.54 101.91 83 12 ASN A 728 ? ? -86.62 41.47 84 13 ALA A 651 ? ? -166.64 105.32 85 13 LYS A 669 ? ? -65.95 -73.09 86 13 ASN A 687 ? ? 72.21 36.97 87 13 MET A 714 ? ? -59.66 100.90 88 13 SER A 717 ? ? 35.44 37.99 89 14 SER A 645 ? ? -173.63 123.15 90 14 PHE A 663 ? ? -38.87 116.30 91 14 LYS A 669 ? ? -63.30 -72.62 92 14 SER A 690 ? ? -37.70 139.23 93 14 ASN A 712 ? ? -39.16 106.77 94 14 MET A 714 ? ? -64.70 99.79 95 14 LYS A 715 ? ? -59.92 99.78 96 14 SER A 717 ? ? 37.72 40.03 97 14 ALA A 729 ? ? -39.45 97.61 98 15 ASN A 658 ? ? 71.50 35.13 99 15 LYS A 669 ? ? -64.23 -70.80 100 15 ASN A 712 ? ? -39.04 105.27 101 15 LYS A 715 ? ? -53.79 99.90 102 15 SER A 717 ? ? 35.21 37.32 103 15 ARG A 727 ? ? -45.89 153.04 104 15 PRO A 732 ? ? -69.72 96.16 105 16 PHE A 663 ? ? -38.62 119.75 106 16 LYS A 669 ? ? -60.09 -71.16 107 16 LEU A 679 ? ? -99.29 -62.40 108 16 ARG A 706 ? ? -90.39 -62.34 109 16 ALA A 707 ? ? -35.75 -39.79 110 16 ASN A 712 ? ? -57.75 105.08 111 16 SER A 717 ? ? 35.12 31.74 112 17 PRO A 660 ? ? -47.97 150.84 113 17 LYS A 715 ? ? -59.93 101.41 114 17 SER A 717 ? ? 36.57 39.79 115 17 SER A 733 ? ? -34.86 120.06 116 18 PHE A 663 ? ? -37.50 115.24 117 18 LYS A 669 ? ? -66.55 -70.72 118 18 LEU A 679 ? ? -108.67 -60.18 119 18 ASN A 687 ? ? 71.04 38.80 120 18 ASN A 712 ? ? -45.54 107.09 121 18 LYS A 715 ? ? -56.27 102.12 122 18 SER A 717 ? ? 37.62 41.83 123 18 ASN A 728 ? ? -95.60 41.28 124 19 PHE A 663 ? ? -35.45 116.26 125 19 LYS A 669 ? ? -64.61 -70.74 126 19 ASN A 712 ? ? -35.02 117.24 127 19 LYS A 715 ? ? -50.84 99.65 128 19 ALA A 729 ? ? -94.31 -60.38 129 19 SER A 734 ? ? -36.18 151.02 130 20 ASN A 658 ? ? 71.20 46.22 131 20 PHE A 663 ? ? -34.68 142.90 132 20 LYS A 669 ? ? -65.02 -72.97 133 20 LEU A 679 ? ? -120.37 -63.83 134 20 CYS A 708 ? ? -36.18 -36.69 135 20 MET A 714 ? ? -61.32 91.96 136 20 SER A 717 ? ? 37.66 31.26 137 20 ASN A 728 ? ? -86.19 41.96 #