HEADER RNA BINDING PROTEIN 27-MAR-06 2DHX TITLE SOLUTION STRUCTURE OF THE RRM DOMAIN IN THE HUMAN POLY (ADP-RIBOSE) TITLE 2 POLYMERASE FAMILY, MEMBER 10 VARIANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY (ADP-RIBOSE) POLYMERASE FAMILY, MEMBER 10 VARIANT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RRM DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP10; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050822-12; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS POLY (ADP-RIBOSE) POLYMERASE FAMILY, RRM DOMAIN, RNA-BINDING, KEYWDS 2 STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL KEYWDS 3 AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.ZHAO,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DHX 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DHX 1 VERSN REVDAT 1 20-FEB-07 2DHX 0 JRNL AUTH C.ZHAO,T.KIGAWA,N.TOCHIO,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE RRM DOMAIN IN THE HUMAN POLY JRNL TITL 2 (ADP-RIBOSE) POLYMERASE FAMILY, MEMBER 10 VARIANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 1.0.8 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DHX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-06. REMARK 100 THE DEPOSITION ID IS D_1000025433. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.22MM RRM DOMAIN U-15N, 13C; REMARK 210 20MM D-TRIS-HCL (PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9732, CYANA 1.0.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 26 H GLU A 30 1.49 REMARK 500 H LEU A 46 O GLY A 49 1.54 REMARK 500 O ARG A 14 H SER A 77 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 35 -74.86 -116.03 REMARK 500 1 LEU A 46 -169.28 -116.66 REMARK 500 1 CYS A 48 62.36 -101.66 REMARK 500 1 ALA A 74 149.99 172.55 REMARK 500 1 ARG A 84 124.13 177.82 REMARK 500 1 ALA A 87 124.30 175.47 REMARK 500 1 LEU A 90 78.64 -155.66 REMARK 500 2 SER A 5 81.11 56.20 REMARK 500 2 LEU A 25 -37.68 -39.68 REMARK 500 2 SER A 35 -78.89 -124.44 REMARK 500 2 LEU A 46 -97.27 -88.02 REMARK 500 2 CYS A 48 44.59 -91.08 REMARK 500 2 ALA A 65 -30.88 -38.99 REMARK 500 2 ALA A 74 140.88 175.76 REMARK 500 2 ARG A 84 108.02 174.57 REMARK 500 2 SER A 99 144.85 -39.44 REMARK 500 3 SER A 2 132.99 -174.23 REMARK 500 3 SER A 35 -66.45 -133.99 REMARK 500 3 CYS A 48 -79.25 -50.71 REMARK 500 3 ALA A 65 -31.23 -39.25 REMARK 500 3 ALA A 74 146.94 171.58 REMARK 500 3 ARG A 84 -58.02 173.09 REMARK 500 3 LEU A 89 108.36 -59.40 REMARK 500 3 LEU A 91 154.39 -40.29 REMARK 500 4 SER A 2 -58.12 -141.01 REMARK 500 4 SER A 3 149.62 -177.55 REMARK 500 4 LEU A 46 -169.54 -113.90 REMARK 500 4 CYS A 48 -75.43 -100.65 REMARK 500 4 ALA A 65 -30.19 -39.81 REMARK 500 4 ALA A 74 137.07 -177.92 REMARK 500 4 ARG A 84 110.25 173.33 REMARK 500 4 ARG A 88 117.40 -172.75 REMARK 500 4 LEU A 89 61.53 -166.96 REMARK 500 4 LEU A 90 89.55 -152.83 REMARK 500 4 GLN A 92 82.79 52.63 REMARK 500 4 SER A 99 139.47 179.43 REMARK 500 5 SER A 2 -48.42 -159.94 REMARK 500 5 SER A 3 -82.91 63.32 REMARK 500 5 SER A 6 85.84 51.99 REMARK 500 5 LEU A 25 -38.09 -39.14 REMARK 500 5 SER A 35 -82.25 -102.95 REMARK 500 5 CYS A 48 78.31 -65.61 REMARK 500 5 ALA A 65 -30.57 -39.73 REMARK 500 5 HIS A 72 68.53 61.41 REMARK 500 5 ALA A 74 148.18 170.68 REMARK 500 5 ARG A 84 86.92 52.36 REMARK 500 5 ALA A 85 154.42 60.78 REMARK 500 5 ALA A 87 68.69 -169.61 REMARK 500 5 ARG A 88 61.15 -112.35 REMARK 500 5 LEU A 89 -67.95 -91.51 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2DHX A 8 98 GB 62897387 BAD96634 10 100 SEQADV 2DHX GLY A 1 GB 62897387 CLONING ARTIFACT SEQADV 2DHX SER A 2 GB 62897387 CLONING ARTIFACT SEQADV 2DHX SER A 3 GB 62897387 CLONING ARTIFACT SEQADV 2DHX GLY A 4 GB 62897387 CLONING ARTIFACT SEQADV 2DHX SER A 5 GB 62897387 CLONING ARTIFACT SEQADV 2DHX SER A 6 GB 62897387 CLONING ARTIFACT SEQADV 2DHX GLY A 7 GB 62897387 CLONING ARTIFACT SEQADV 2DHX SER A 99 GB 62897387 CLONING ARTIFACT SEQADV 2DHX GLY A 100 GB 62897387 CLONING ARTIFACT SEQADV 2DHX PRO A 101 GB 62897387 CLONING ARTIFACT SEQADV 2DHX SER A 102 GB 62897387 CLONING ARTIFACT SEQADV 2DHX SER A 103 GB 62897387 CLONING ARTIFACT SEQADV 2DHX GLY A 104 GB 62897387 CLONING ARTIFACT SEQRES 1 A 104 GLY SER SER GLY SER SER GLY GLY VAL ALA VAL GLU VAL SEQRES 2 A 104 ARG GLY LEU PRO PRO ALA VAL PRO ASP GLU LEU LEU THR SEQRES 3 A 104 LEU TYR PHE GLU ASN ARG ARG ARG SER GLY GLY GLY PRO SEQRES 4 A 104 VAL LEU SER TRP GLN ARG LEU GLY CYS GLY GLY VAL LEU SEQRES 5 A 104 THR PHE ARG GLU PRO ALA ASP ALA GLU ARG VAL LEU ALA SEQRES 6 A 104 GLN ALA ASP HIS GLU LEU HIS GLY ALA GLN LEU SER LEU SEQRES 7 A 104 ARG PRO ALA PRO PRO ARG ALA PRO ALA ARG LEU LEU LEU SEQRES 8 A 104 GLN GLY LEU PRO PRO GLY THR SER GLY PRO SER SER GLY HELIX 1 1 PRO A 21 ASN A 31 1 11 HELIX 2 2 GLU A 56 ALA A 65 1 10 SHEET 1 A 4 SER A 42 LEU A 46 0 SHEET 2 A 4 GLY A 49 THR A 53 -1 O GLY A 49 N LEU A 46 SHEET 3 A 4 ALA A 10 ARG A 14 -1 N VAL A 11 O LEU A 52 SHEET 4 A 4 SER A 77 PRO A 80 -1 O SER A 77 N ARG A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1