HEADER HYDROLASE 28-MAR-06 2DI4 TITLE CRYSTAL STRUCTURE OF THE FTSH PROTEASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN FTSH HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 403-634; COMPND 5 SYNONYM: ZINC PROTEASE; COMPND 6 EC: 3.4.24.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS METALLOPROTEINASE, HEXAMER-RING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.SUNO,H.NIWA,D.TSUCHIYA,X.ZHANG,M.YOSHIDA,K.MORIKAWA REVDAT 3 13-JUL-11 2DI4 1 VERSN REVDAT 2 24-FEB-09 2DI4 1 VERSN REVDAT 1 27-JUN-06 2DI4 0 JRNL AUTH R.SUNO,H.NIWA,D.TSUCHIYA,X.ZHANG,M.YOSHIDA,K.MORIKAWA JRNL TITL STRUCTURE OF THE WHOLE CYTOSOLIC REGION OF ATP-DEPENDENT JRNL TITL 2 PROTEASE FTSH JRNL REF MOL.CELL V. 22 575 2006 JRNL REFN ISSN 1097-2765 JRNL PMID 16762831 JRNL DOI 10.1016/J.MOLCEL.2006.04.020 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.NIWA,D.TSUCHIYA,H.MAKYIO,M.YOSHIDA,K.MORIKAWA REMARK 1 TITL HEXAMERIC RING STRUCTURE OF THE ATPASE DOMAIN OF THE REMARK 1 TITL 2 MEMBRANE-INTEGRATED METALLOPROTEASE FTSH FROM THERMUS REMARK 1 TITL 3 THERMOPHILUS HB8 REMARK 1 REF STRUCTURE V. 10 1415 2002 REMARK 1 REFN ISSN 0969-2126 REMARK 1 PMID 12377127 REMARK 1 DOI 10.1016/S0969-2126(02)00855-9 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 11487 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.100 REMARK 3 FREE R VALUE TEST SET COUNT : 876 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.86 REMARK 3 REFLECTION IN BIN (WORKING SET) : 787 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.51000 REMARK 3 B22 (A**2) : -4.51000 REMARK 3 B33 (A**2) : 6.76000 REMARK 3 B12 (A**2) : -2.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.233 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.411 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.283 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2667 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3609 ; 1.360 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 345 ; 5.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 105 ;42.485 ;24.857 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;19.140 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;24.200 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 428 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1956 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1260 ; 0.246 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1832 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 74 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.299 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 44 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.349 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1783 ; 0.742 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 756 ; 1.150 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 993 ; 2.025 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 853 ; 2.940 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 3 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 408 A 441 6 REMARK 3 1 B 408 B 442 6 REMARK 3 2 A 458 A 524 6 REMARK 3 2 B 459 B 524 6 REMARK 3 3 A 535 A 607 6 REMARK 3 3 B 535 B 607 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1221 ; 0.39 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1221 ; 1.37 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 408 A 441 REMARK 3 RESIDUE RANGE : A 458 A 524 REMARK 3 RESIDUE RANGE : A 535 A 607 REMARK 3 ORIGIN FOR THE GROUP (A): 71.4277 2.9950 37.8189 REMARK 3 T TENSOR REMARK 3 T11: 0.0025 T22: -0.0901 REMARK 3 T33: -0.1553 T12: 0.0190 REMARK 3 T13: -0.0169 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 4.1420 L22: 1.5427 REMARK 3 L33: 0.7689 L12: -0.8146 REMARK 3 L13: -0.5805 L23: 0.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0258 S12: 0.1163 S13: -0.2674 REMARK 3 S21: -0.0542 S22: -0.0606 S23: -0.1450 REMARK 3 S31: 0.1166 S32: -0.0342 S33: 0.0348 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 408 B 442 REMARK 3 RESIDUE RANGE : B 459 B 524 REMARK 3 RESIDUE RANGE : B 535 B 607 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3721 6.8800 37.5309 REMARK 3 T TENSOR REMARK 3 T11: -0.0495 T22: -0.0397 REMARK 3 T33: -0.2019 T12: -0.0347 REMARK 3 T13: -0.0184 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.0815 L22: 5.0715 REMARK 3 L33: 0.7597 L12: -0.5168 REMARK 3 L13: -0.3784 L23: 0.4755 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0019 S13: -0.1896 REMARK 3 S21: -0.0694 S22: -0.0033 S23: 0.2200 REMARK 3 S31: 0.0604 S32: -0.0766 S33: 0.0290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DI4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-06. REMARK 100 THE RCSB ID CODE IS RCSB025440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000, 1.05000, 1.00524, REMARK 200 1.00714 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.790 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES (PH 6.0), 5% PEG8K, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.75000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 31.75000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y+1, X-Y, Z AND - REMARK 300 X+Y+1, -X+1, Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -225.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 116.80000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 58.40000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 101.15177 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 397 REMARK 465 GLN A 398 REMARK 465 GLY A 399 REMARK 465 PRO A 400 REMARK 465 LEU A 401 REMARK 465 GLY A 402 REMARK 465 SER A 403 REMARK 465 HIS A 404 REMARK 465 MET A 405 REMARK 465 PRO A 442 REMARK 465 ARG A 443 REMARK 465 GLY A 444 REMARK 465 MET A 445 REMARK 465 ALA A 446 REMARK 465 LEU A 447 REMARK 465 GLY A 448 REMARK 465 VAL A 449 REMARK 465 THR A 450 REMARK 465 GLN A 451 REMARK 465 GLN A 452 REMARK 465 LEU A 453 REMARK 465 PRO A 454 REMARK 465 ILE A 455 REMARK 465 GLU A 456 REMARK 465 ASP A 457 REMARK 465 VAL A 525 REMARK 465 ALA A 526 REMARK 465 ASN A 527 REMARK 465 PRO A 528 REMARK 465 PHE A 529 REMARK 465 LEU A 530 REMARK 465 GLY A 531 REMARK 465 GLY A 532 REMARK 465 MET A 533 REMARK 465 THR A 534 REMARK 465 LYS A 608 REMARK 465 GLU A 609 REMARK 465 GLU A 610 REMARK 465 LEU A 611 REMARK 465 PHE A 612 REMARK 465 ASP A 613 REMARK 465 LYS A 614 REMARK 465 ASP A 615 REMARK 465 ARG A 616 REMARK 465 LYS A 617 REMARK 465 SER A 618 REMARK 465 GLU A 619 REMARK 465 GLU A 620 REMARK 465 ASN A 621 REMARK 465 LYS A 622 REMARK 465 GLU A 623 REMARK 465 LEU A 624 REMARK 465 LYS A 625 REMARK 465 SER A 626 REMARK 465 GLU A 627 REMARK 465 GLU A 628 REMARK 465 VAL A 629 REMARK 465 LYS A 630 REMARK 465 GLU A 631 REMARK 465 GLU A 632 REMARK 465 VAL A 633 REMARK 465 VAL A 634 REMARK 465 PHE B 397 REMARK 465 GLN B 398 REMARK 465 GLY B 399 REMARK 465 PRO B 400 REMARK 465 LEU B 401 REMARK 465 GLY B 402 REMARK 465 SER B 403 REMARK 465 HIS B 404 REMARK 465 MET B 405 REMARK 465 THR B 406 REMARK 465 ARG B 443 REMARK 465 GLY B 444 REMARK 465 MET B 445 REMARK 465 ALA B 446 REMARK 465 LEU B 447 REMARK 465 GLY B 448 REMARK 465 VAL B 449 REMARK 465 THR B 450 REMARK 465 GLN B 451 REMARK 465 GLN B 452 REMARK 465 LEU B 453 REMARK 465 PRO B 454 REMARK 465 ILE B 455 REMARK 465 GLU B 456 REMARK 465 ASP B 457 REMARK 465 LYS B 458 REMARK 465 VAL B 525 REMARK 465 ALA B 526 REMARK 465 ASN B 527 REMARK 465 PRO B 528 REMARK 465 PHE B 529 REMARK 465 LEU B 530 REMARK 465 GLY B 531 REMARK 465 GLY B 532 REMARK 465 MET B 533 REMARK 465 THR B 534 REMARK 465 LYS B 608 REMARK 465 GLU B 609 REMARK 465 GLU B 610 REMARK 465 LEU B 611 REMARK 465 PHE B 612 REMARK 465 ASP B 613 REMARK 465 LYS B 614 REMARK 465 ASP B 615 REMARK 465 ARG B 616 REMARK 465 LYS B 617 REMARK 465 SER B 618 REMARK 465 GLU B 619 REMARK 465 GLU B 620 REMARK 465 ASN B 621 REMARK 465 LYS B 622 REMARK 465 GLU B 623 REMARK 465 LEU B 624 REMARK 465 LYS B 625 REMARK 465 SER B 626 REMARK 465 GLU B 627 REMARK 465 GLU B 628 REMARK 465 VAL B 629 REMARK 465 LYS B 630 REMARK 465 GLU B 631 REMARK 465 GLU B 632 REMARK 465 VAL B 633 REMARK 465 VAL B 634 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 406 OG1 CG2 REMARK 470 ILE A 407 CG1 CG2 CD1 REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 LYS A 434 CG CD CE NZ REMARK 470 VAL A 435 CG1 CG2 REMARK 470 LYS A 437 CG CD CE NZ REMARK 470 ILE A 441 CG1 CG2 CD1 REMARK 470 LYS A 458 CG CD CE NZ REMARK 470 ILE A 460 CG1 CG2 CD1 REMARK 470 ARG A 524 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 538 CG OD1 OD2 REMARK 470 GLU A 557 CG CD OE1 OE2 REMARK 470 GLU A 571 CG CD OE1 OE2 REMARK 470 LYS A 578 CG CD CE NZ REMARK 470 LYS A 579 CG CD CE NZ REMARK 470 LYS A 583 CG CD CE NZ REMARK 470 GLU A 584 CG CD OE1 OE2 REMARK 470 LYS A 596 CG CD CE NZ REMARK 470 ILE A 600 CG1 CG2 CD1 REMARK 470 GLU A 601 CG CD OE1 OE2 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 LYS A 605 CG CD CE NZ REMARK 470 LYS A 607 CG CD CE NZ REMARK 470 ILE B 407 CG1 CG2 CD1 REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 ASP B 430 CG OD1 OD2 REMARK 470 ASP B 431 CG OD1 OD2 REMARK 470 ASP B 433 CG OD1 OD2 REMARK 470 LYS B 434 CG CD CE NZ REMARK 470 VAL B 435 CG1 CG2 REMARK 470 LYS B 437 CG CD CE NZ REMARK 470 LYS B 516 CG CD CE NZ REMARK 470 ARG B 524 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 537 CG1 CG2 REMARK 470 ASP B 538 CG OD1 OD2 REMARK 470 GLU B 568 CG CD OE1 OE2 REMARK 470 GLU B 571 CG CD OE1 OE2 REMARK 470 LYS B 578 CG CD CE NZ REMARK 470 LYS B 579 CG CD CE NZ REMARK 470 GLU B 590 CG CD OE1 OE2 REMARK 470 LYS B 596 CG CD CE NZ REMARK 470 ILE B 600 CG1 CG2 CD1 REMARK 470 GLU B 601 CG CD OE1 OE2 REMARK 470 LYS B 603 CG CD CE NZ REMARK 470 LYS B 605 CG CD CE NZ REMARK 470 LYS B 607 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 437 CA - C - N ANGL. DEV. = 17.4 DEGREES REMARK 500 LYS B 437 O - C - N ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 407 112.93 -169.71 REMARK 500 PRO A 409 -33.66 -31.62 REMARK 500 SER A 429 109.99 -54.25 REMARK 500 ASP A 430 2.35 -63.49 REMARK 500 ASP A 431 -67.71 -145.74 REMARK 500 LYS A 437 94.19 -165.81 REMARK 500 HIS A 459 -159.35 -145.15 REMARK 500 PRO A 519 34.19 -69.73 REMARK 500 ARG A 523 90.88 -61.57 REMARK 500 GLU A 584 -28.35 68.05 REMARK 500 LYS A 605 90.70 152.17 REMARK 500 CYS A 606 -71.26 -144.10 REMARK 500 ASP B 431 -61.46 -134.18 REMARK 500 ASP B 432 96.05 -20.35 REMARK 500 LYS B 434 141.88 176.25 REMARK 500 HIS B 436 -145.48 -143.23 REMARK 500 LYS B 437 167.54 130.19 REMARK 500 ILE B 441 -79.91 -80.24 REMARK 500 ARG B 523 -81.57 -55.71 REMARK 500 GLU B 584 -28.40 70.86 REMARK 500 CYS B 606 -56.34 -127.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS B 437 -14.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A1001 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 422 NE2 REMARK 620 2 ASP A 496 OD1 92.0 REMARK 620 3 ASP A 496 OD2 80.7 44.8 REMARK 620 4 HIS A 418 NE2 86.5 135.3 91.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B2001 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 496 OD1 REMARK 620 2 HIS B 418 NE2 137.2 REMARK 620 3 ASP B 496 OD2 41.9 98.7 REMARK 620 4 HIS B 422 NE2 84.3 91.1 101.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 2001 DBREF 2DI4 A 405 634 UNP O67077 FTSH_AQUAE 405 634 DBREF 2DI4 B 405 634 UNP O67077 FTSH_AQUAE 405 634 SEQADV 2DI4 PHE A 397 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLN A 398 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY A 399 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 PRO A 400 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 LEU A 401 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY A 402 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 SER A 403 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 HIS A 404 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 PHE B 397 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLN B 398 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY B 399 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 PRO B 400 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 LEU B 401 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 GLY B 402 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 SER B 403 UNP O67077 CLONING ARTIFACT SEQADV 2DI4 HIS B 404 UNP O67077 CLONING ARTIFACT SEQRES 1 A 238 PHE GLN GLY PRO LEU GLY SER HIS MET THR ILE SER PRO SEQRES 2 A 238 LYS GLU LYS GLU LYS ILE ALA ILE HIS GLU ALA GLY HIS SEQRES 3 A 238 ALA LEU MET GLY LEU VAL SER ASP ASP ASP ASP LYS VAL SEQRES 4 A 238 HIS LYS ILE SER ILE ILE PRO ARG GLY MET ALA LEU GLY SEQRES 5 A 238 VAL THR GLN GLN LEU PRO ILE GLU ASP LYS HIS ILE TYR SEQRES 6 A 238 ASP LYS LYS ASP LEU TYR ASN LYS ILE LEU VAL LEU LEU SEQRES 7 A 238 GLY GLY ARG ALA ALA GLU GLU VAL PHE PHE GLY LYS ASP SEQRES 8 A 238 GLY ILE THR THR GLY ALA GLU ASN ASP LEU GLN ARG ALA SEQRES 9 A 238 THR ASP LEU ALA TYR ARG MET VAL SER MET TRP GLY MET SEQRES 10 A 238 SER ASP LYS VAL GLY PRO ILE ALA ILE ARG ARG VAL ALA SEQRES 11 A 238 ASN PRO PHE LEU GLY GLY MET THR THR ALA VAL ASP THR SEQRES 12 A 238 SER PRO ASP LEU LEU ARG GLU ILE ASP GLU GLU VAL LYS SEQRES 13 A 238 ARG ILE ILE THR GLU GLN TYR GLU LYS ALA LYS ALA ILE SEQRES 14 A 238 VAL GLU GLU TYR LYS GLU PRO LEU LYS ALA VAL VAL LYS SEQRES 15 A 238 LYS LEU LEU GLU LYS GLU THR ILE THR CYS GLU GLU PHE SEQRES 16 A 238 VAL GLU VAL PHE LYS LEU TYR GLY ILE GLU LEU LYS ASP SEQRES 17 A 238 LYS CYS LYS LYS GLU GLU LEU PHE ASP LYS ASP ARG LYS SEQRES 18 A 238 SER GLU GLU ASN LYS GLU LEU LYS SER GLU GLU VAL LYS SEQRES 19 A 238 GLU GLU VAL VAL SEQRES 1 B 238 PHE GLN GLY PRO LEU GLY SER HIS MET THR ILE SER PRO SEQRES 2 B 238 LYS GLU LYS GLU LYS ILE ALA ILE HIS GLU ALA GLY HIS SEQRES 3 B 238 ALA LEU MET GLY LEU VAL SER ASP ASP ASP ASP LYS VAL SEQRES 4 B 238 HIS LYS ILE SER ILE ILE PRO ARG GLY MET ALA LEU GLY SEQRES 5 B 238 VAL THR GLN GLN LEU PRO ILE GLU ASP LYS HIS ILE TYR SEQRES 6 B 238 ASP LYS LYS ASP LEU TYR ASN LYS ILE LEU VAL LEU LEU SEQRES 7 B 238 GLY GLY ARG ALA ALA GLU GLU VAL PHE PHE GLY LYS ASP SEQRES 8 B 238 GLY ILE THR THR GLY ALA GLU ASN ASP LEU GLN ARG ALA SEQRES 9 B 238 THR ASP LEU ALA TYR ARG MET VAL SER MET TRP GLY MET SEQRES 10 B 238 SER ASP LYS VAL GLY PRO ILE ALA ILE ARG ARG VAL ALA SEQRES 11 B 238 ASN PRO PHE LEU GLY GLY MET THR THR ALA VAL ASP THR SEQRES 12 B 238 SER PRO ASP LEU LEU ARG GLU ILE ASP GLU GLU VAL LYS SEQRES 13 B 238 ARG ILE ILE THR GLU GLN TYR GLU LYS ALA LYS ALA ILE SEQRES 14 B 238 VAL GLU GLU TYR LYS GLU PRO LEU LYS ALA VAL VAL LYS SEQRES 15 B 238 LYS LEU LEU GLU LYS GLU THR ILE THR CYS GLU GLU PHE SEQRES 16 B 238 VAL GLU VAL PHE LYS LEU TYR GLY ILE GLU LEU LYS ASP SEQRES 17 B 238 LYS CYS LYS LYS GLU GLU LEU PHE ASP LYS ASP ARG LYS SEQRES 18 B 238 SER GLU GLU ASN LYS GLU LEU LYS SER GLU GLU VAL LYS SEQRES 19 B 238 GLU GLU VAL VAL HET HG A1001 1 HET HG B2001 1 HETNAM HG MERCURY (II) ION FORMUL 3 HG 2(HG 2+) FORMUL 5 HOH *15(H2 O) HELIX 1 1 SER A 408 SER A 429 1 22 HELIX 2 2 ASP A 462 ILE A 489 1 28 HELIX 3 3 THR A 490 GLY A 492 5 3 HELIX 4 4 ALA A 493 MET A 510 1 18 HELIX 5 5 SER A 540 TYR A 569 1 30 HELIX 6 6 TYR A 569 GLU A 584 1 16 HELIX 7 7 THR A 587 GLY A 599 1 13 HELIX 8 8 SER B 408 SER B 429 1 22 HELIX 9 9 ASP B 462 GLY B 485 1 24 HELIX 10 10 THR B 490 GLY B 492 5 3 HELIX 11 11 ALA B 493 MET B 510 1 18 HELIX 12 12 SER B 540 TYR B 569 1 30 HELIX 13 13 TYR B 569 GLU B 584 1 16 HELIX 14 14 THR B 587 LEU B 597 1 11 SHEET 1 A 2 ILE A 438 SER A 439 0 SHEET 2 A 2 THR A 585 ILE A 586 -1 O ILE A 586 N ILE A 438 SHEET 1 B 2 ILE B 438 SER B 439 0 SHEET 2 B 2 THR B 585 ILE B 586 -1 O ILE B 586 N ILE B 438 SSBOND 1 CYS A 588 CYS A 606 1555 1555 2.02 SSBOND 2 CYS B 588 CYS B 606 1555 1555 2.03 LINK HG HG A1001 NE2 HIS A 422 1555 1555 2.19 LINK HG HG A1001 OD1 ASP A 496 1555 1555 3.14 LINK HG HG A1001 OD2 ASP A 496 1555 1555 1.91 LINK HG HG A1001 NE2 HIS A 418 1555 1555 1.95 LINK HG HG B2001 OD1 ASP B 496 1555 1555 3.29 LINK HG HG B2001 NE2 HIS B 418 1555 1555 2.35 LINK HG HG B2001 OD2 ASP B 496 1555 1555 2.19 LINK HG HG B2001 NE2 HIS B 422 1555 1555 2.38 SITE 1 AC1 3 HIS A 418 HIS A 422 ASP A 496 SITE 1 AC2 3 HIS B 418 HIS B 422 ASP B 496 CRYST1 116.800 116.800 63.500 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008562 0.004943 0.000000 0.00000 SCALE2 0.000000 0.009886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015748 0.00000