data_2DIQ # _entry.id 2DIQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DIQ pdb_00002diq 10.2210/pdb2diq/pdb RCSB RCSB025459 ? ? WWPDB D_1000025459 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hss001000790.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DIQ _pdbx_database_status.recvd_initial_deposition_date 2006-03-30 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dang, W.' 1 'Muto, Y.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Shirouzu, M.' 5 'Terada, T.' 6 'Yokoyama, S.' 7 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 8 # _citation.id primary _citation.title 'Solution structure of the TUDOR domain of Tudor and KH domain containing protein' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dang, W.' 1 ? primary 'Muto, Y.' 2 ? primary 'Inoue, M.' 3 ? primary 'Kigawa, T.' 4 ? primary 'Shirouzu, M.' 5 ? primary 'Terada, T.' 6 ? primary 'Yokoyama, S.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Tudor and KH domain-containing protein' _entity.formula_weight 11823.083 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'TUDOR domain' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKD LRALRSDFLSLPFQAIECSLARIASGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKD LRALRSDFLSLPFQAIECSLARIASGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hss001000790.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 SER n 1 10 LEU n 1 11 GLN n 1 12 LEU n 1 13 ASP n 1 14 LYS n 1 15 LEU n 1 16 VAL n 1 17 ASN n 1 18 GLU n 1 19 MET n 1 20 THR n 1 21 GLN n 1 22 HIS n 1 23 TYR n 1 24 GLU n 1 25 ASN n 1 26 SER n 1 27 VAL n 1 28 PRO n 1 29 GLU n 1 30 ASP n 1 31 LEU n 1 32 THR n 1 33 VAL n 1 34 HIS n 1 35 VAL n 1 36 GLY n 1 37 ASP n 1 38 ILE n 1 39 VAL n 1 40 ALA n 1 41 ALA n 1 42 PRO n 1 43 LEU n 1 44 PRO n 1 45 THR n 1 46 ASN n 1 47 GLY n 1 48 SER n 1 49 TRP n 1 50 TYR n 1 51 ARG n 1 52 ALA n 1 53 ARG n 1 54 VAL n 1 55 LEU n 1 56 GLY n 1 57 THR n 1 58 LEU n 1 59 GLU n 1 60 ASN n 1 61 GLY n 1 62 ASN n 1 63 LEU n 1 64 ASP n 1 65 LEU n 1 66 TYR n 1 67 PHE n 1 68 VAL n 1 69 ASP n 1 70 PHE n 1 71 GLY n 1 72 ASP n 1 73 ASN n 1 74 GLY n 1 75 ASP n 1 76 CYS n 1 77 PRO n 1 78 LEU n 1 79 LYS n 1 80 ASP n 1 81 LEU n 1 82 ARG n 1 83 ALA n 1 84 LEU n 1 85 ARG n 1 86 SER n 1 87 ASP n 1 88 PHE n 1 89 LEU n 1 90 SER n 1 91 LEU n 1 92 PRO n 1 93 PHE n 1 94 GLN n 1 95 ALA n 1 96 ILE n 1 97 GLU n 1 98 CYS n 1 99 SER n 1 100 LEU n 1 101 ALA n 1 102 ARG n 1 103 ILE n 1 104 ALA n 1 105 SER n 1 106 GLY n 1 107 PRO n 1 108 SER n 1 109 SER n 1 110 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'TDRKH, TDRD2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Cell free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050905-13 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code TDRKH_HUMAN _struct_ref.pdbx_db_accession Q9Y2W6 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 295 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DIQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9Y2W6 _struct_ref_seq.db_align_beg 295 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 315 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DIQ GLY A 1 ? UNP Q9Y2W6 ? ? 'cloning artifact' 1 1 1 2DIQ SER A 2 ? UNP Q9Y2W6 ? ? 'cloning artifact' 2 2 1 2DIQ SER A 3 ? UNP Q9Y2W6 ? ? 'cloning artifact' 3 3 1 2DIQ GLY A 4 ? UNP Q9Y2W6 ? ? 'cloning artifact' 4 4 1 2DIQ SER A 5 ? UNP Q9Y2W6 ? ? 'cloning artifact' 5 5 1 2DIQ SER A 6 ? UNP Q9Y2W6 ? ? 'cloning artifact' 6 6 1 2DIQ GLY A 7 ? UNP Q9Y2W6 ? ? 'cloning artifact' 7 7 1 2DIQ SER A 105 ? UNP Q9Y2W6 ? ? 'cloning artifact' 105 8 1 2DIQ GLY A 106 ? UNP Q9Y2W6 ? ? 'cloning artifact' 106 9 1 2DIQ PRO A 107 ? UNP Q9Y2W6 ? ? 'cloning artifact' 107 10 1 2DIQ SER A 108 ? UNP Q9Y2W6 ? ? 'cloning artifact' 108 11 1 2DIQ SER A 109 ? UNP Q9Y2W6 ? ? 'cloning artifact' 109 12 1 2DIQ GLY A 110 ? UNP Q9Y2W6 ? ? 'cloning artifact' 110 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DIQ _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DIQ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DIQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 Delaglio,F. 2 'data analysis' NMRView 5.0.4 Johnson,B.A. 3 'data analysis' KUJIRA 0.9321 Kobayashi,N. 4 'structure solution' CYANA 2.0.17 Guntert,P. 5 refinement CYANA 2.0.17 Guntert,P. 6 # _exptl.entry_id 2DIQ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DIQ _struct.title 'Solution structure of the TUDOR domain of Tudor and KH domain containing protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DIQ _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' _struct_keywords.text ;TUDOR domain, Tudor and KH domain containing protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LEU A 10 ? TYR A 23 ? LEU A 10 TYR A 23 1 ? 14 HELX_P HELX_P2 2 LEU A 78 ? ASP A 80 ? LEU A 78 ASP A 80 5 ? 3 HELX_P HELX_P3 3 SER A 86 ? LEU A 89 ? SER A 86 LEU A 89 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 73 ? CYS A 76 ? ASN A 73 CYS A 76 A 2 LEU A 63 ? PHE A 67 ? LEU A 63 PHE A 67 A 3 TYR A 50 ? VAL A 54 ? TYR A 50 VAL A 54 A 4 ILE A 38 ? ALA A 41 ? ILE A 38 ALA A 41 A 5 ARG A 82 ? ALA A 83 ? ARG A 82 ALA A 83 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 74 ? O GLY A 74 N LEU A 65 ? N LEU A 65 A 2 3 O TYR A 66 ? O TYR A 66 N ARG A 53 ? N ARG A 53 A 3 4 O TYR A 50 ? O TYR A 50 N ALA A 41 ? N ALA A 41 A 4 5 N ALA A 40 ? N ALA A 40 O ARG A 82 ? O ARG A 82 # _database_PDB_matrix.entry_id 2DIQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DIQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 MET 19 19 19 MET MET A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 GLN 21 21 21 GLN GLN A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 SER 26 26 26 SER SER A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 LEU 31 31 31 LEU LEU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 HIS 34 34 34 HIS HIS A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ASP 37 37 37 ASP ASP A . n A 1 38 ILE 38 38 38 ILE ILE A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 PRO 42 42 42 PRO PRO A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 TYR 50 50 50 TYR TYR A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLY 56 56 56 GLY GLY A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ASN 62 62 62 ASN ASN A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 PHE 70 70 70 PHE PHE A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 ASP 75 75 75 ASP ASP A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 PRO 77 77 77 PRO PRO A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 PHE 88 88 88 PHE PHE A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 SER 90 90 90 SER SER A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 PRO 92 92 92 PRO PRO A . n A 1 93 PHE 93 93 93 PHE PHE A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 CYS 98 98 98 CYS CYS A . n A 1 99 SER 99 99 99 SER SER A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ARG 102 102 102 ARG ARG A . n A 1 103 ILE 103 103 103 ILE ILE A . n A 1 104 ALA 104 104 104 ALA ALA A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-09-30 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 5 ? ? -43.57 106.88 2 1 GLN A 21 ? ? -36.61 -29.98 3 1 HIS A 22 ? ? -88.71 -75.02 4 1 ASN A 25 ? ? -115.31 50.85 5 1 PHE A 67 ? ? -55.90 97.31 6 1 ASP A 72 ? ? -57.96 -175.77 7 1 CYS A 98 ? ? -49.20 160.30 8 1 SER A 99 ? ? -49.07 172.84 9 2 THR A 20 ? ? -40.42 -70.69 10 2 GLN A 21 ? ? -34.68 -33.75 11 2 HIS A 22 ? ? -86.59 -74.30 12 2 GLU A 24 ? ? -33.96 -38.12 13 2 ASN A 25 ? ? -116.04 61.53 14 2 ASN A 62 ? ? -53.80 177.95 15 2 PHE A 67 ? ? -59.03 103.97 16 2 ASP A 72 ? ? -52.58 -178.80 17 2 GLU A 97 ? ? -38.80 147.46 18 2 LEU A 100 ? ? -34.69 122.25 19 3 THR A 20 ? ? -42.45 -72.36 20 3 GLU A 24 ? ? -34.08 -35.23 21 3 ASN A 25 ? ? -109.11 52.84 22 3 ASN A 62 ? ? -51.55 171.50 23 3 PHE A 67 ? ? -56.61 108.97 24 3 ASP A 72 ? ? -55.67 177.34 25 3 GLU A 97 ? ? 34.49 34.34 26 3 CYS A 98 ? ? -89.29 38.76 27 3 PRO A 107 ? ? -69.70 2.43 28 4 SER A 2 ? ? -130.63 -54.18 29 4 SER A 6 ? ? 35.07 40.80 30 4 LEU A 12 ? ? -73.46 -70.03 31 4 ASP A 13 ? ? -39.58 -38.83 32 4 GLN A 21 ? ? -35.52 -33.95 33 4 HIS A 22 ? ? -83.73 -75.06 34 4 GLU A 24 ? ? -37.95 -35.70 35 4 ASN A 25 ? ? -106.67 43.65 36 4 ARG A 51 ? ? -59.10 106.80 37 4 ASN A 62 ? ? -49.71 169.71 38 4 PHE A 67 ? ? -57.12 99.89 39 4 ALA A 83 ? ? -58.08 109.91 40 4 ALA A 101 ? ? -53.20 175.31 41 4 PRO A 107 ? ? -69.79 -179.21 42 5 THR A 20 ? ? -46.80 -74.43 43 5 GLN A 21 ? ? -35.17 -39.25 44 5 GLU A 24 ? ? -31.58 -37.90 45 5 ASN A 25 ? ? -113.14 56.08 46 5 ASN A 62 ? ? -47.57 166.33 47 5 ALA A 83 ? ? -55.92 100.92 48 5 LEU A 84 ? ? -39.05 115.34 49 5 GLU A 97 ? ? -60.39 -179.60 50 5 LEU A 100 ? ? -58.48 89.79 51 5 ARG A 102 ? ? -34.60 147.56 52 6 ASP A 13 ? ? -38.76 -37.63 53 6 THR A 20 ? ? -44.05 -71.36 54 6 ASN A 25 ? ? -105.09 51.43 55 6 ASN A 62 ? ? -49.66 170.33 56 6 PHE A 67 ? ? -55.24 103.40 57 6 ASP A 72 ? ? -59.75 179.58 58 6 GLU A 97 ? ? -55.90 -176.62 59 6 LEU A 100 ? ? -34.72 117.99 60 6 ILE A 103 ? ? 35.17 54.69 61 7 THR A 20 ? ? -50.93 -71.03 62 7 GLN A 21 ? ? -35.01 -31.99 63 7 GLU A 24 ? ? -32.77 -36.20 64 7 ASN A 25 ? ? -113.65 58.27 65 7 ASN A 62 ? ? -54.56 171.33 66 7 PHE A 67 ? ? -57.77 100.01 67 7 ALA A 83 ? ? -59.19 101.13 68 7 LEU A 84 ? ? -39.63 119.48 69 8 GLN A 21 ? ? -39.13 -36.80 70 8 HIS A 22 ? ? -76.59 -73.44 71 8 GLU A 24 ? ? -33.08 -35.10 72 8 ASN A 25 ? ? -110.03 50.26 73 8 VAL A 35 ? ? -46.06 109.55 74 8 PHE A 67 ? ? -58.35 97.84 75 8 ASP A 72 ? ? -64.87 -176.13 76 8 CYS A 98 ? ? -48.08 171.98 77 8 PRO A 107 ? ? -69.74 97.36 78 8 SER A 109 ? ? -121.37 -52.97 79 9 SER A 2 ? ? -125.35 -58.55 80 9 SER A 5 ? ? -101.44 -60.46 81 9 THR A 20 ? ? -46.12 -71.61 82 9 GLN A 21 ? ? -33.34 -34.73 83 9 GLU A 24 ? ? -33.96 -34.12 84 9 VAL A 35 ? ? -35.85 117.11 85 9 ASN A 62 ? ? -59.47 172.73 86 9 PHE A 67 ? ? -58.29 105.92 87 9 ASP A 72 ? ? -56.71 177.89 88 9 CYS A 98 ? ? -35.08 115.37 89 9 SER A 109 ? ? -173.00 116.53 90 10 THR A 20 ? ? -41.76 -70.76 91 10 GLU A 24 ? ? -32.47 -38.01 92 10 ASN A 25 ? ? -114.02 57.29 93 10 VAL A 35 ? ? -38.20 108.93 94 10 PRO A 44 ? ? -69.79 2.82 95 10 ASN A 62 ? ? -48.03 170.17 96 10 PHE A 67 ? ? -57.28 108.09 97 10 ASP A 72 ? ? -63.50 -177.49 98 10 SER A 99 ? ? -35.56 138.97 99 10 PRO A 107 ? ? -69.78 80.04 100 11 THR A 20 ? ? -41.42 -70.74 101 11 GLN A 21 ? ? -33.44 -34.54 102 11 GLU A 24 ? ? -35.41 -32.90 103 11 PHE A 67 ? ? -57.80 95.25 104 11 PRO A 107 ? ? -69.77 -174.07 105 12 ASP A 13 ? ? -38.87 -33.58 106 12 THR A 20 ? ? -48.55 -71.55 107 12 GLU A 24 ? ? -31.27 -37.56 108 12 ASN A 25 ? ? -112.24 57.98 109 12 ASN A 62 ? ? -58.33 171.47 110 12 ASP A 72 ? ? -56.47 -178.10 111 12 ALA A 83 ? ? -57.14 108.51 112 12 CYS A 98 ? ? -43.82 160.01 113 13 GLU A 24 ? ? -31.13 -39.99 114 13 ASN A 25 ? ? -109.90 53.21 115 13 PHE A 67 ? ? -58.26 107.71 116 13 ASP A 72 ? ? -58.76 178.14 117 13 ALA A 83 ? ? -59.61 106.57 118 13 GLU A 97 ? ? -39.53 154.14 119 13 CYS A 98 ? ? -46.54 159.82 120 13 SER A 99 ? ? -34.85 128.25 121 13 ALA A 101 ? ? -35.46 126.68 122 13 PRO A 107 ? ? -69.81 1.08 123 13 SER A 108 ? ? -34.47 104.88 124 14 THR A 20 ? ? -56.01 -75.36 125 14 HIS A 22 ? ? -79.20 -74.78 126 14 ASN A 25 ? ? -101.27 53.37 127 14 VAL A 35 ? ? -39.92 114.88 128 14 ASN A 62 ? ? -46.73 165.54 129 14 PHE A 67 ? ? -58.26 99.87 130 14 ASP A 72 ? ? -54.54 -175.50 131 14 ALA A 83 ? ? -57.99 103.16 132 15 SER A 3 ? ? 38.72 41.81 133 15 THR A 20 ? ? -42.50 -71.23 134 15 GLU A 24 ? ? -33.77 -36.07 135 15 ASN A 25 ? ? -108.98 55.86 136 15 VAL A 35 ? ? -41.62 108.35 137 15 PHE A 67 ? ? -57.05 99.33 138 15 ASP A 72 ? ? -58.72 -175.07 139 15 ALA A 83 ? ? -59.10 101.87 140 15 LEU A 84 ? ? -36.78 146.35 141 15 CYS A 98 ? ? -35.50 133.75 142 15 LEU A 100 ? ? -47.60 157.61 143 15 ALA A 104 ? ? -173.97 141.71 144 15 SER A 105 ? ? -57.07 93.03 145 16 SER A 6 ? ? -161.00 114.71 146 16 THR A 20 ? ? -46.98 -71.16 147 16 GLN A 21 ? ? -34.40 -32.84 148 16 ASN A 25 ? ? -112.85 57.72 149 16 VAL A 35 ? ? -42.82 107.45 150 16 ASP A 72 ? ? -57.49 -176.58 151 16 CYS A 98 ? ? -39.43 146.68 152 16 ALA A 101 ? ? -56.33 91.26 153 17 ASP A 13 ? ? -39.11 -35.59 154 17 THR A 20 ? ? -55.51 -74.94 155 17 HIS A 22 ? ? -80.87 -74.29 156 17 GLU A 24 ? ? -34.00 -36.87 157 17 ASN A 25 ? ? -111.90 50.84 158 17 ASP A 72 ? ? -58.72 177.17 159 17 GLU A 97 ? ? -38.49 153.82 160 17 SER A 99 ? ? -39.35 128.79 161 17 SER A 105 ? ? -120.22 -56.69 162 18 SER A 5 ? ? -91.68 48.82 163 18 GLN A 21 ? ? -37.61 -31.34 164 18 HIS A 22 ? ? -88.87 -73.48 165 18 GLU A 24 ? ? -34.24 -38.47 166 18 ASN A 25 ? ? -110.05 57.76 167 18 ASN A 62 ? ? -55.08 173.19 168 18 PHE A 67 ? ? -57.93 94.88 169 18 ALA A 83 ? ? -59.88 105.65 170 18 ALA A 101 ? ? -42.66 104.79 171 18 ILE A 103 ? ? 29.44 40.30 172 18 SER A 105 ? ? -48.11 168.02 173 18 PRO A 107 ? ? -69.70 -174.09 174 18 SER A 108 ? ? -50.87 109.28 175 19 GLN A 21 ? ? -35.98 -31.59 176 19 GLU A 24 ? ? -33.77 -33.86 177 19 VAL A 35 ? ? -39.04 114.46 178 19 ARG A 51 ? ? -59.05 107.21 179 19 ASP A 72 ? ? -64.00 -175.46 180 19 ALA A 83 ? ? -57.62 101.34 181 19 PRO A 107 ? ? -69.78 1.95 182 20 GLN A 21 ? ? -35.65 -30.48 183 20 HIS A 22 ? ? -86.18 -71.30 184 20 GLU A 24 ? ? -36.34 -29.58 185 20 VAL A 35 ? ? -35.28 111.33 186 20 PHE A 67 ? ? -57.47 105.65 187 20 ASP A 72 ? ? -68.83 -174.92 188 20 LEU A 100 ? ? -67.55 86.67 189 20 PRO A 107 ? ? -69.79 -175.59 #