HEADER PROTEIN BINDING 06-APR-06 2DK3 TITLE SOLUTION STRUCTURE OF MIB-HERC2 DOMAIN IN HECT DOMAIN CONTAINING TITLE 2 PROTEIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE HECTD1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MIB-HERC2 DOMAIN; COMPND 5 SYNONYM: HECT DOMAIN-CONTAINING PROTEIN 1, E3 LIGASE FOR INHIBIN COMPND 6 RECEPTOR, EULIR; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HECTD1, KIAA1131; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050719-02; SOURCE 9 OTHER_DETAILS: CELL FREE PROTEIN SYNTHESIS KEYWDS MIB-HERC2 DOMAIN, HECT DOMAIN CONTAINING PROTEIN 1, STRUCTURAL KEYWDS 2 GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA,RIKEN AUTHOR 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DK3 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DK3 1 VERSN REVDAT 1 06-OCT-06 2DK3 0 JRNL AUTH F.HE,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TERADA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF MIB-HERC2 DOMAIN IN HECT DOMAIN JRNL TITL 2 CONTAINING PROTEIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT,P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DK3 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025508. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8MM U-15N,13C; 20MM PHOSPHATE REMARK 210 BUFFER NA; 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9321, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 16 78.85 -64.40 REMARK 500 1 ASP A 27 30.32 -90.90 REMARK 500 1 ASP A 34 39.35 -87.68 REMARK 500 1 GLN A 38 139.55 -34.46 REMARK 500 1 LEU A 47 103.81 -57.40 REMARK 500 1 PRO A 78 83.62 -69.72 REMARK 500 2 SER A 10 39.57 -99.94 REMARK 500 2 MET A 16 74.53 -64.76 REMARK 500 2 PRO A 18 99.08 -69.78 REMARK 500 2 ASP A 27 34.56 -85.08 REMARK 500 2 LYS A 29 36.02 -87.04 REMARK 500 2 ARG A 31 -74.04 -102.27 REMARK 500 2 ASP A 34 48.00 -101.60 REMARK 500 2 GLN A 38 173.07 -50.36 REMARK 500 2 LEU A 47 99.26 -55.00 REMARK 500 2 PRO A 78 85.08 -69.71 REMARK 500 3 MET A 16 78.02 -63.66 REMARK 500 3 LYS A 29 41.83 -84.91 REMARK 500 3 ARG A 31 -74.54 -82.85 REMARK 500 3 LEU A 47 102.86 -49.61 REMARK 500 3 PRO A 78 90.22 -69.69 REMARK 500 4 SER A 2 157.60 -44.61 REMARK 500 4 ARG A 9 -174.92 -55.24 REMARK 500 4 MET A 16 82.83 -59.63 REMARK 500 4 PRO A 18 99.50 -69.80 REMARK 500 4 ASP A 27 30.81 -88.51 REMARK 500 4 ASP A 32 82.79 -64.51 REMARK 500 4 GLN A 38 111.75 -33.84 REMARK 500 4 LEU A 47 108.01 -45.84 REMARK 500 4 PRO A 78 82.87 -69.76 REMARK 500 4 SER A 81 -61.91 -100.07 REMARK 500 5 SER A 5 126.84 -35.11 REMARK 500 5 SER A 10 53.44 -92.69 REMARK 500 5 PRO A 18 96.82 -69.74 REMARK 500 5 ASP A 27 45.30 -87.38 REMARK 500 5 ASP A 32 94.14 -51.45 REMARK 500 5 ASP A 34 38.61 -92.23 REMARK 500 5 THR A 42 110.31 -163.31 REMARK 500 5 LEU A 47 106.39 -49.92 REMARK 500 5 PRO A 78 81.25 -69.81 REMARK 500 6 SER A 10 44.49 -95.60 REMARK 500 6 MET A 16 76.29 -67.88 REMARK 500 6 PRO A 18 97.41 -69.75 REMARK 500 6 ASP A 27 37.28 -86.89 REMARK 500 6 ARG A 31 173.07 -46.29 REMARK 500 6 ASP A 32 93.70 -35.11 REMARK 500 6 ASP A 34 41.30 -89.75 REMARK 500 6 LEU A 47 102.64 -52.12 REMARK 500 6 PRO A 78 80.33 -69.84 REMARK 500 7 MET A 16 72.73 -67.09 REMARK 500 REMARK 500 THIS ENTRY HAS 172 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101105.1 RELATED DB: TARGETDB DBREF 2DK3 A 8 80 UNP Q9ULT8 HECD1_HUMAN 1268 1340 SEQADV 2DK3 GLY A 1 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 SER A 2 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 SER A 3 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 GLY A 4 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 SER A 5 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 SER A 6 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 GLY A 7 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 SER A 81 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 GLY A 82 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 PRO A 83 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 SER A 84 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 SER A 85 UNP Q9ULT8 CLONING ARTIFACT SEQADV 2DK3 GLY A 86 UNP Q9ULT8 CLONING ARTIFACT SEQRES 1 A 86 GLY SER SER GLY SER SER GLY VAL ARG SER GLN VAL LEU SEQRES 2 A 86 LYS TYR MET VAL PRO GLY ALA ARG VAL ILE ARG GLY LEU SEQRES 3 A 86 ASP TRP LYS TRP ARG ASP GLN ASP GLY SER PRO GLN GLY SEQRES 4 A 86 GLU GLY THR VAL THR GLY GLU LEU HIS ASN GLY TRP ILE SEQRES 5 A 86 ASP VAL THR TRP ASP ALA GLY GLY SER ASN SER TYR ARG SEQRES 6 A 86 MET GLY ALA GLU GLY LYS PHE ASP LEU LYS LEU ALA PRO SEQRES 7 A 86 GLY TYR SER GLY PRO SER SER GLY HELIX 1 1 VAL A 12 LYS A 14 5 3 SHEET 1 A 3 GLY A 41 THR A 42 0 SHEET 2 A 3 ARG A 21 ARG A 24 -1 N VAL A 22 O GLY A 41 SHEET 3 A 3 LEU A 74 LEU A 76 -1 O LYS A 75 N ILE A 23 SHEET 1 B 2 TRP A 51 TRP A 56 0 SHEET 2 B 2 GLY A 60 ARG A 65 -1 O TYR A 64 N ILE A 52 CISPEP 1 SER A 36 PRO A 37 1 -0.03 CISPEP 2 SER A 36 PRO A 37 2 -0.01 CISPEP 3 SER A 36 PRO A 37 3 -0.07 CISPEP 4 SER A 36 PRO A 37 4 -0.07 CISPEP 5 SER A 36 PRO A 37 5 0.06 CISPEP 6 SER A 36 PRO A 37 6 0.05 CISPEP 7 SER A 36 PRO A 37 7 0.04 CISPEP 8 SER A 36 PRO A 37 8 0.01 CISPEP 9 SER A 36 PRO A 37 9 -0.08 CISPEP 10 SER A 36 PRO A 37 10 -0.09 CISPEP 11 SER A 36 PRO A 37 11 -0.04 CISPEP 12 SER A 36 PRO A 37 12 -0.09 CISPEP 13 SER A 36 PRO A 37 13 -0.03 CISPEP 14 SER A 36 PRO A 37 14 -0.02 CISPEP 15 SER A 36 PRO A 37 15 -0.11 CISPEP 16 SER A 36 PRO A 37 16 0.01 CISPEP 17 SER A 36 PRO A 37 17 0.03 CISPEP 18 SER A 36 PRO A 37 18 -0.13 CISPEP 19 SER A 36 PRO A 37 19 -0.05 CISPEP 20 SER A 36 PRO A 37 20 -0.06 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1