HEADER METAL BINDING PROTEIN 14-APR-06 2DKT TITLE SOLUTION STRUCTURE OF THE CHY ZINC FINGER DOMAIN OF THE RING FINGER TITLE 2 AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 FROM MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN COMPND 3 1; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: CHY DOMIAN; COMPND 6 SYNONYM: ZINC FINGER PROTEIN 363, CH-RICH-INTERACTING MATCH WITH COMPND 7 PLAG1, ANDROGEN RECEPTOR N-TERMINAL-INTERACTING PROTEIN; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: RCHY1; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P030421-68; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1, RCHY1, KEYWDS 2 CHY ZINC FINGER DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 3 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 4 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, METAL BINDING KEYWDS 5 PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.MIYAMOTO,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DKT 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 2DKT 1 VERSN REVDAT 1 14-OCT-06 2DKT 0 JRNL AUTH K.MIYAMOTO,T.KIGAWA,S.KOSHIBA,M.INOUE,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE CHY ZINC FINGER DOMAIN OF THE RING JRNL TITL 2 FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 FROM JRNL TITL 3 MUS MUSCULUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, CYANA 2.0.17 REMARK 3 AUTHORS : BRUKER (XWINNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DKT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025533. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.23MM CHY DOMAIN U-13C, 15N; REMARK 210 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 0.1MM ZNCL2; 90%H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9732, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION, STRUCTURES WITH REMARK 210 THE LEAST RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 -173.53 -69.75 REMARK 500 1 PRO A 31 5.99 -69.73 REMARK 500 1 GLU A 65 43.93 35.98 REMARK 500 1 LYS A 94 178.94 -58.51 REMARK 500 1 ASP A 95 93.25 -69.09 REMARK 500 1 ARG A 97 54.98 37.76 REMARK 500 1 LYS A 112 -39.37 -38.62 REMARK 500 1 ASP A 114 35.43 -90.18 REMARK 500 1 ASN A 122 46.31 71.80 REMARK 500 1 LEU A 129 50.76 -111.46 REMARK 500 1 SER A 138 141.36 -174.16 REMARK 500 2 PRO A 16 -171.86 -69.73 REMARK 500 2 PRO A 31 6.81 -69.73 REMARK 500 2 GLU A 65 38.74 34.06 REMARK 500 2 GLN A 68 -177.70 -173.62 REMARK 500 2 ASP A 95 78.10 -64.57 REMARK 500 2 LYS A 112 -34.59 -35.70 REMARK 500 2 ASP A 114 38.25 -94.36 REMARK 500 2 LEU A 129 43.54 -95.26 REMARK 500 2 PRO A 140 -171.37 -69.76 REMARK 500 3 LEU A 12 110.60 -167.39 REMARK 500 3 PRO A 31 2.89 -69.76 REMARK 500 3 GLU A 65 44.36 37.66 REMARK 500 3 ASP A 95 76.33 -62.72 REMARK 500 3 LYS A 112 -38.59 -38.73 REMARK 500 3 ASP A 114 34.93 -86.57 REMARK 500 3 THR A 127 -35.53 -36.33 REMARK 500 3 LEU A 129 41.26 -98.35 REMARK 500 3 ARG A 130 49.09 -76.88 REMARK 500 4 ALA A 13 152.25 -46.04 REMARK 500 4 ARG A 17 41.20 -92.33 REMARK 500 4 PRO A 31 6.51 -69.68 REMARK 500 4 THR A 38 -64.78 -29.28 REMARK 500 4 GLU A 65 38.55 35.33 REMARK 500 4 GLN A 68 -179.13 -174.18 REMARK 500 4 ASP A 95 92.38 -56.36 REMARK 500 4 LYS A 112 -38.25 -35.64 REMARK 500 4 ASP A 114 37.53 -86.18 REMARK 500 4 LEU A 129 46.16 -104.53 REMARK 500 4 CYS A 135 -70.87 -82.80 REMARK 500 4 ILE A 136 179.63 -55.47 REMARK 500 4 SER A 138 -50.86 -129.15 REMARK 500 4 PRO A 140 -171.18 -69.82 REMARK 500 5 LEU A 12 99.15 -65.07 REMARK 500 5 PRO A 16 -164.48 -69.77 REMARK 500 5 ARG A 17 47.73 29.10 REMARK 500 5 HIS A 21 -71.00 -87.10 REMARK 500 5 ALA A 25 42.97 -104.93 REMARK 500 5 PRO A 31 3.62 -69.72 REMARK 500 5 LYS A 57 -39.59 -132.63 REMARK 500 REMARK 500 THIS ENTRY HAS 244 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 191 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 HIS A 21 ND1 97.7 REMARK 620 3 CYS A 39 SG 109.3 101.6 REMARK 620 4 CYS A 42 SG 119.9 114.2 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 241 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 32 SG REMARK 620 2 CYS A 33 SG 117.7 REMARK 620 3 HIS A 43 NE2 104.2 116.5 REMARK 620 4 HIS A 49 NE2 108.6 112.8 94.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 291 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 61 SG REMARK 620 2 CYS A 64 SG 120.0 REMARK 620 3 CYS A 74 SG 104.6 100.8 REMARK 620 4 CYS A 77 SG 111.3 117.1 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 341 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 86 SG REMARK 620 2 CYS A 89 SG 102.9 REMARK 620 3 HIS A 100 ND1 97.2 114.7 REMARK 620 4 CYS A 107 SG 111.3 102.3 126.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 391 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 101 SG REMARK 620 2 CYS A 104 SG 105.9 REMARK 620 3 HIS A 117 ND1 96.4 110.2 REMARK 620 4 CYS A 124 SG 102.0 117.3 121.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 441 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 118 SG REMARK 620 2 CYS A 121 SG 115.9 REMARK 620 3 HIS A 133 NE2 110.1 97.4 REMARK 620 4 CYS A 135 SG 117.0 100.9 113.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 191 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 241 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 291 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 391 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 441 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MMT007020724.1 RELATED DB: TARGETDB DBREF 2DKT A 8 137 UNP Q9CR50 ZN363_MOUSE 9 138 SEQADV 2DKT GLY A 1 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT SER A 2 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT SER A 3 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT GLY A 4 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT SER A 5 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT SER A 6 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT GLY A 7 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT SER A 138 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT GLY A 139 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT PRO A 140 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT SER A 141 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT SER A 142 UNP Q9CR50 CLONING ARTIFACT SEQADV 2DKT GLY A 143 UNP Q9CR50 CLONING ARTIFACT SEQRES 1 A 143 GLY SER SER GLY SER SER GLY GLY VAL ARG ASN LEU ALA SEQRES 2 A 143 GLN GLY PRO ARG GLY CYS GLU HIS TYR ASP ARG ALA CYS SEQRES 3 A 143 LEU LEU LYS ALA PRO CYS CYS ASP LYS LEU TYR THR CYS SEQRES 4 A 143 ARG LEU CYS HIS ASP THR ASN GLU ASP HIS GLN LEU ASP SEQRES 5 A 143 ARG PHE LYS VAL LYS GLU VAL GLN CYS ILE ASN CYS GLU SEQRES 6 A 143 LYS LEU GLN HIS ALA GLN GLN THR CYS GLU ASP CYS SER SEQRES 7 A 143 THR LEU PHE GLY GLU TYR TYR CYS SER ILE CYS HIS LEU SEQRES 8 A 143 PHE ASP LYS ASP LYS ARG GLN TYR HIS CYS GLU SER CYS SEQRES 9 A 143 GLY ILE CYS ARG ILE GLY PRO LYS GLU ASP PHE PHE HIS SEQRES 10 A 143 CYS LEU LYS CYS ASN LEU CYS LEU THR THR ASN LEU ARG SEQRES 11 A 143 GLY LYS HIS LYS CYS ILE GLU SER GLY PRO SER SER GLY HET ZN A 191 1 HET ZN A 241 1 HET ZN A 291 1 HET ZN A 341 1 HET ZN A 391 1 HET ZN A 441 1 HETNAM ZN ZINC ION FORMUL 2 ZN 6(ZN 2+) HELIX 1 1 CYS A 39 ASN A 46 1 8 HELIX 2 2 PRO A 111 GLU A 113 5 3 HELIX 3 3 ASN A 128 ARG A 130 5 3 SHEET 1 A 4 LYS A 35 TYR A 37 0 SHEET 2 A 4 CYS A 26 ALA A 30 -1 N ALA A 30 O LYS A 35 SHEET 3 A 4 VAL A 59 CYS A 61 -1 O GLN A 60 N LEU A 27 SHEET 4 A 4 LEU A 67 GLN A 68 -1 O GLN A 68 N VAL A 59 SHEET 1 B 2 TYR A 84 TYR A 85 0 SHEET 2 B 2 PHE A 92 ASP A 93 -1 O ASP A 93 N TYR A 84 SHEET 1 C 2 GLN A 98 CYS A 101 0 SHEET 2 C 2 ILE A 106 ILE A 109 -1 O ARG A 108 N TYR A 99 SHEET 1 D 2 PHE A 115 CYS A 118 0 SHEET 2 D 2 LEU A 123 THR A 126 -1 O LEU A 125 N PHE A 116 LINK SG CYS A 19 ZN ZN A 191 1555 1555 2.29 LINK ND1 HIS A 21 ZN ZN A 191 1555 1555 2.10 LINK SG CYS A 32 ZN ZN A 241 1555 1555 2.21 LINK SG CYS A 33 ZN ZN A 241 1555 1555 2.22 LINK SG CYS A 39 ZN ZN A 191 1555 1555 2.19 LINK SG CYS A 42 ZN ZN A 191 1555 1555 2.27 LINK NE2 HIS A 43 ZN ZN A 241 1555 1555 2.00 LINK NE2 HIS A 49 ZN ZN A 241 1555 1555 2.09 LINK SG CYS A 61 ZN ZN A 291 1555 1555 2.36 LINK SG CYS A 64 ZN ZN A 291 1555 1555 2.22 LINK SG CYS A 74 ZN ZN A 291 1555 1555 2.39 LINK SG CYS A 77 ZN ZN A 291 1555 1555 2.29 LINK SG CYS A 86 ZN ZN A 341 1555 1555 2.40 LINK SG CYS A 89 ZN ZN A 341 1555 1555 2.40 LINK ND1 HIS A 100 ZN ZN A 341 1555 1555 2.01 LINK SG CYS A 101 ZN ZN A 391 1555 1555 2.39 LINK SG CYS A 104 ZN ZN A 391 1555 1555 2.29 LINK SG CYS A 107 ZN ZN A 341 1555 1555 2.16 LINK ND1 HIS A 117 ZN ZN A 391 1555 1555 2.09 LINK SG CYS A 118 ZN ZN A 441 1555 1555 2.28 LINK SG CYS A 121 ZN ZN A 441 1555 1555 2.36 LINK SG CYS A 124 ZN ZN A 391 1555 1555 2.19 LINK NE2 HIS A 133 ZN ZN A 441 1555 1555 2.10 LINK SG CYS A 135 ZN ZN A 441 1555 1555 2.30 CISPEP 1 GLY A 110 PRO A 111 1 0.11 CISPEP 2 GLY A 110 PRO A 111 2 0.14 CISPEP 3 GLY A 110 PRO A 111 3 0.08 CISPEP 4 GLY A 110 PRO A 111 4 0.09 CISPEP 5 GLY A 110 PRO A 111 5 -0.02 CISPEP 6 GLY A 110 PRO A 111 6 0.10 CISPEP 7 GLY A 110 PRO A 111 7 -0.05 CISPEP 8 GLY A 110 PRO A 111 8 0.08 CISPEP 9 GLY A 110 PRO A 111 9 0.05 CISPEP 10 GLY A 110 PRO A 111 10 0.07 CISPEP 11 GLY A 110 PRO A 111 11 -0.01 CISPEP 12 GLY A 110 PRO A 111 12 -0.04 CISPEP 13 GLY A 110 PRO A 111 13 0.05 CISPEP 14 GLY A 110 PRO A 111 14 0.04 CISPEP 15 GLY A 110 PRO A 111 15 0.05 CISPEP 16 GLY A 110 PRO A 111 16 0.03 CISPEP 17 GLY A 110 PRO A 111 17 0.06 CISPEP 18 GLY A 110 PRO A 111 18 0.07 CISPEP 19 GLY A 110 PRO A 111 19 0.10 CISPEP 20 GLY A 110 PRO A 111 20 0.05 SITE 1 AC1 4 CYS A 19 HIS A 21 CYS A 39 CYS A 42 SITE 1 AC2 4 CYS A 32 CYS A 33 HIS A 43 HIS A 49 SITE 1 AC3 4 CYS A 61 CYS A 64 CYS A 74 CYS A 77 SITE 1 AC4 4 CYS A 86 CYS A 89 HIS A 100 CYS A 107 SITE 1 AC5 4 CYS A 101 CYS A 104 HIS A 117 CYS A 124 SITE 1 AC6 4 CYS A 118 CYS A 121 HIS A 133 CYS A 135 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1