data_2DM3 # _entry.id 2DM3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DM3 pdb_00002dm3 10.2210/pdb2dm3/pdb RCSB RCSB025574 ? ? WWPDB D_1000025574 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DM3 _pdbx_database_status.recvd_initial_deposition_date 2006-04-20 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nagashima, T.' 1 'Hayashi, F.' 2 'Yokoyama, S.' 3 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 4 # _citation.id primary _citation.title 'Solution structure of the second ig domain of human palladin' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nagashima, T.' 1 ? primary 'Hayashi, F.' 2 ? primary 'Yokoyama, S.' 3 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'KIAA0992 protein' _entity.formula_weight 11636.107 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ig _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name palladin # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI YTCIATNRAGQNSFSLELVVAAKESGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI YTCIATNRAGQNSFSLELVVAAKESGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 PHE n 1 9 ARG n 1 10 PRO n 1 11 HIS n 1 12 PHE n 1 13 LEU n 1 14 GLN n 1 15 ALA n 1 16 PRO n 1 17 GLY n 1 18 ASP n 1 19 LEU n 1 20 THR n 1 21 VAL n 1 22 GLN n 1 23 GLU n 1 24 GLY n 1 25 LYS n 1 26 LEU n 1 27 CYS n 1 28 ARG n 1 29 MET n 1 30 ASP n 1 31 CYS n 1 32 LYS n 1 33 VAL n 1 34 SER n 1 35 GLY n 1 36 LEU n 1 37 PRO n 1 38 THR n 1 39 PRO n 1 40 ASP n 1 41 LEU n 1 42 SER n 1 43 TRP n 1 44 GLN n 1 45 LEU n 1 46 ASP n 1 47 GLY n 1 48 LYS n 1 49 PRO n 1 50 VAL n 1 51 ARG n 1 52 PRO n 1 53 ASP n 1 54 SER n 1 55 ALA n 1 56 HIS n 1 57 LYS n 1 58 MET n 1 59 LEU n 1 60 VAL n 1 61 ARG n 1 62 GLU n 1 63 ASN n 1 64 GLY n 1 65 VAL n 1 66 HIS n 1 67 SER n 1 68 LEU n 1 69 ILE n 1 70 ILE n 1 71 GLU n 1 72 PRO n 1 73 VAL n 1 74 THR n 1 75 SER n 1 76 ARG n 1 77 ASP n 1 78 ALA n 1 79 GLY n 1 80 ILE n 1 81 TYR n 1 82 THR n 1 83 CYS n 1 84 ILE n 1 85 ALA n 1 86 THR n 1 87 ASN n 1 88 ARG n 1 89 ALA n 1 90 GLY n 1 91 GLN n 1 92 ASN n 1 93 SER n 1 94 PHE n 1 95 SER n 1 96 LEU n 1 97 GLU n 1 98 LEU n 1 99 VAL n 1 100 VAL n 1 101 ALA n 1 102 ALA n 1 103 LYS n 1 104 GLU n 1 105 SER n 1 106 GLY n 1 107 PRO n 1 108 SER n 1 109 SER n 1 110 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene KIAA0992 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050829-23 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code BAA76836 _struct_ref.pdbx_db_accession 4589628 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATN RAGQNSFSLELVVAAKE ; _struct_ref.pdbx_align_begin 522 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DM3 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 104 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4589628 _struct_ref_seq.db_align_beg 522 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 618 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 104 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DM3 GLY A 1 ? GB 4589628 ? ? 'cloning artifact' 1 1 1 2DM3 SER A 2 ? GB 4589628 ? ? 'cloning artifact' 2 2 1 2DM3 SER A 3 ? GB 4589628 ? ? 'cloning artifact' 3 3 1 2DM3 GLY A 4 ? GB 4589628 ? ? 'cloning artifact' 4 4 1 2DM3 SER A 5 ? GB 4589628 ? ? 'cloning artifact' 5 5 1 2DM3 SER A 6 ? GB 4589628 ? ? 'cloning artifact' 6 6 1 2DM3 GLY A 7 ? GB 4589628 ? ? 'cloning artifact' 7 7 1 2DM3 SER A 105 ? GB 4589628 ? ? 'cloning artifact' 105 8 1 2DM3 GLY A 106 ? GB 4589628 ? ? 'cloning artifact' 106 9 1 2DM3 PRO A 107 ? GB 4589628 ? ? 'cloning artifact' 107 10 1 2DM3 SER A 108 ? GB 4589628 ? ? 'cloning artifact' 108 11 1 2DM3 SER A 109 ? GB 4589628 ? ? 'cloning artifact' 109 12 1 2DM3 GLY A 110 ? GB 4589628 ? ? 'cloning artifact' 110 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120mM _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.89mM uniformly 13C and 15N labeled protein; 20mM TrisHCl, 100mM NaCl, 1mM DTT, 0.02% NaN3; 10% D2O, 90% H2O' _pdbx_nmr_sample_details.solvent_system '10% D2O, 90% H2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DM3 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 2DM3 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DM3 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C Varian 1 processing NMRPipe 20020425 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9318 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DM3 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DM3 _struct.title 'Solution structure of the second ig domain of human palladin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DM3 _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;beta-sandwich, KIAA0992, myopalladin, actin-associated scaffold, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, PROTEIN BINDING ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id THR _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 74 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ALA _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 78 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id THR _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 74 _struct_conf.end_auth_comp_id ALA _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 78 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 1 -0.13 2 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 1 -0.07 3 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 2 -0.11 4 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 2 -0.01 5 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 3 -0.16 6 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 3 0.05 7 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 4 -0.13 8 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 4 -0.05 9 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 5 -0.14 10 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 5 0.01 11 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 6 -0.08 12 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 6 -0.05 13 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 7 -0.15 14 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 7 0.00 15 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 8 -0.10 16 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 8 0.04 17 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 9 -0.10 18 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 9 0.03 19 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 10 -0.15 20 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 10 0.02 21 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 11 -0.23 22 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 11 0.03 23 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 12 -0.15 24 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 12 0.04 25 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 13 -0.19 26 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 13 -0.01 27 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 14 -0.10 28 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 14 0.02 29 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 15 -0.16 30 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 15 0.03 31 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 16 -0.11 32 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 16 -0.01 33 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 17 -0.14 34 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 17 -0.01 35 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 18 -0.15 36 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 18 0.02 37 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 19 -0.02 38 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 19 0.03 39 LEU 36 A . ? LEU 36 A PRO 37 A ? PRO 37 A 20 -0.12 40 GLU 71 A . ? GLU 71 A PRO 72 A ? PRO 72 A 20 0.06 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 2 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS A 11 ? GLN A 14 ? HIS A 11 GLN A 14 A 2 ASP A 30 ? SER A 34 ? ASP A 30 SER A 34 A 3 HIS A 66 ? ILE A 70 ? HIS A 66 ILE A 70 A 4 HIS A 56 ? VAL A 60 ? HIS A 56 VAL A 60 B 1 ASP A 18 ? GLN A 22 ? ASP A 18 GLN A 22 B 2 GLU A 97 ? ALA A 101 ? GLU A 97 ALA A 101 C 1 ASP A 40 ? SER A 42 ? ASP A 40 SER A 42 C 2 CYS A 83 ? THR A 86 ? CYS A 83 THR A 86 C 3 GLN A 91 ? PHE A 94 ? GLN A 91 PHE A 94 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 11 ? N HIS A 11 O SER A 34 ? O SER A 34 A 2 3 N CYS A 31 ? N CYS A 31 O HIS A 66 ? O HIS A 66 A 3 4 O ILE A 69 ? O ILE A 69 N LYS A 57 ? N LYS A 57 B 1 2 N LEU A 19 ? N LEU A 19 O VAL A 99 ? O VAL A 99 C 1 2 N ASP A 40 ? N ASP A 40 O THR A 86 ? O THR A 86 C 2 3 N ALA A 85 ? N ALA A 85 O ASN A 92 ? O ASN A 92 # _database_PDB_matrix.entry_id 2DM3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DM3 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 HIS 11 11 11 HIS HIS A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 PRO 16 16 16 PRO PRO A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 GLY 24 24 24 GLY GLY A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 CYS 27 27 27 CYS CYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 MET 29 29 29 MET MET A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 LYS 32 32 32 LYS LYS A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 LEU 36 36 36 LEU LEU A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 ASP 40 40 40 ASP ASP A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 TRP 43 43 43 TRP TRP A . n A 1 44 GLN 44 44 44 GLN GLN A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 VAL 50 50 50 VAL VAL A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 PRO 52 52 52 PRO PRO A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 HIS 56 56 56 HIS HIS A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 VAL 65 65 65 VAL VAL A . n A 1 66 HIS 66 66 66 HIS HIS A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 GLU 71 71 71 GLU GLU A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 SER 75 75 75 SER SER A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 ASP 77 77 77 ASP ASP A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ASN 87 87 87 ASN ASN A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ALA 89 89 89 ALA ALA A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 PHE 94 94 94 PHE PHE A . n A 1 95 SER 95 95 95 SER SER A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 GLU 97 97 97 GLU GLU A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 VAL 100 100 100 VAL VAL A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 LYS 103 103 103 LYS LYS A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 PRO 107 107 107 PRO PRO A . n A 1 108 SER 108 108 108 SER SER A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 GLY 110 110 110 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-04-24 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 16 ? ? -69.80 -173.43 2 1 GLU A 23 ? ? -35.45 138.53 3 1 THR A 38 ? ? -175.49 105.03 4 1 GLU A 71 ? ? -172.37 124.43 5 1 PRO A 72 ? ? -69.73 -178.83 6 1 PRO A 107 ? ? -69.79 1.90 7 2 ASP A 46 ? ? 71.25 50.47 8 2 PRO A 72 ? ? -69.80 -174.43 9 2 ARG A 88 ? ? -36.93 -37.15 10 2 SER A 105 ? ? -117.72 53.55 11 3 PRO A 10 ? ? -69.70 98.83 12 3 PRO A 16 ? ? -69.74 -177.56 13 3 THR A 38 ? ? -166.87 109.46 14 3 GLU A 62 ? ? -71.02 -71.15 15 3 PRO A 72 ? ? -69.84 -164.24 16 3 ALA A 102 ? ? -52.98 170.59 17 3 SER A 109 ? ? -49.86 152.35 18 4 SER A 2 ? ? -66.86 93.13 19 4 SER A 5 ? ? -92.21 46.37 20 4 PRO A 16 ? ? -69.72 -166.60 21 4 GLU A 23 ? ? -35.69 143.19 22 4 PRO A 37 ? ? -69.75 -177.96 23 4 PRO A 72 ? ? -69.72 -165.23 24 4 ALA A 102 ? ? -41.92 155.74 25 4 PRO A 107 ? ? -69.75 85.94 26 5 SER A 3 ? ? -48.47 109.64 27 5 SER A 5 ? ? -68.80 92.78 28 5 ARG A 9 ? ? -39.38 139.21 29 5 GLU A 23 ? ? -35.08 139.96 30 5 PRO A 37 ? ? -69.72 -165.44 31 5 PRO A 72 ? ? -69.78 -179.19 32 6 SER A 5 ? ? -105.59 48.11 33 6 PRO A 16 ? ? -69.75 -175.48 34 6 PRO A 37 ? ? -69.82 -175.20 35 6 PRO A 72 ? ? -69.75 -170.62 36 6 ASP A 77 ? ? -39.40 -38.37 37 6 ALA A 102 ? ? -48.20 158.58 38 6 SER A 105 ? ? -167.30 110.68 39 7 PRO A 16 ? ? -69.79 -170.84 40 7 GLU A 23 ? ? -35.20 139.29 41 7 PRO A 37 ? ? -69.76 -166.84 42 7 GLU A 62 ? ? -80.23 -73.26 43 7 ASN A 63 ? ? -34.28 -34.36 44 8 PRO A 16 ? ? -69.80 -177.45 45 8 GLU A 23 ? ? -39.11 141.05 46 8 ALA A 102 ? ? -43.54 162.79 47 9 SER A 6 ? ? -52.49 -176.00 48 9 PRO A 37 ? ? -69.75 -172.73 49 9 SER A 54 ? ? -134.99 -57.85 50 9 ARG A 61 ? ? -64.66 -178.48 51 9 PRO A 72 ? ? -69.77 -168.94 52 9 LYS A 103 ? ? -37.42 -37.43 53 10 SER A 2 ? ? -51.33 172.11 54 10 PRO A 16 ? ? -69.74 -178.31 55 10 GLU A 23 ? ? -36.51 134.21 56 10 PRO A 37 ? ? -69.80 -171.96 57 10 LYS A 103 ? ? -46.47 152.24 58 10 GLU A 104 ? ? -39.16 140.54 59 10 SER A 108 ? ? -45.62 156.89 60 11 PRO A 16 ? ? -69.78 -167.47 61 11 PRO A 37 ? ? -69.68 -164.29 62 11 SER A 54 ? ? -39.30 -38.32 63 11 PRO A 72 ? ? -69.78 -172.28 64 11 SER A 108 ? ? -160.16 117.17 65 12 SER A 3 ? ? -90.90 38.24 66 12 PRO A 16 ? ? -69.77 -177.88 67 12 PRO A 37 ? ? -69.71 -172.74 68 12 GLU A 71 ? ? -172.86 124.34 69 12 PRO A 72 ? ? -69.82 -174.90 70 12 PHE A 94 ? ? -170.38 134.93 71 13 PRO A 16 ? ? -69.76 -179.70 72 13 PRO A 72 ? ? -69.74 -171.36 73 13 GLU A 104 ? ? -170.31 143.27 74 14 SER A 5 ? ? -35.93 132.88 75 14 PRO A 16 ? ? -69.72 -178.20 76 14 PRO A 37 ? ? -69.77 -171.01 77 14 PRO A 49 ? ? -69.72 96.53 78 14 SER A 54 ? ? -39.42 -39.09 79 14 PRO A 72 ? ? -69.79 -174.11 80 14 PRO A 107 ? ? -69.73 -176.38 81 15 PRO A 16 ? ? -69.78 -170.83 82 15 PRO A 37 ? ? -69.71 -177.92 83 15 PRO A 72 ? ? -69.80 -172.80 84 15 ARG A 88 ? ? -39.21 -33.08 85 16 PRO A 16 ? ? -69.77 -177.15 86 16 PRO A 37 ? ? -69.81 -164.75 87 16 PRO A 72 ? ? -69.70 -170.81 88 16 SER A 108 ? ? -34.57 106.52 89 17 PRO A 16 ? ? -69.77 -176.72 90 17 PRO A 37 ? ? -69.76 -168.98 91 17 PRO A 49 ? ? -69.78 99.57 92 17 SER A 54 ? ? -34.88 -39.05 93 17 PRO A 72 ? ? -69.80 -174.52 94 17 SER A 109 ? ? -49.40 151.95 95 18 SER A 6 ? ? -53.93 178.02 96 18 ARG A 9 ? ? -39.88 139.29 97 18 PRO A 16 ? ? -69.75 -175.40 98 18 GLU A 23 ? ? -35.67 138.57 99 18 PRO A 37 ? ? -69.75 -177.85 100 18 SER A 54 ? ? -132.99 -58.40 101 19 SER A 5 ? ? -49.28 162.80 102 19 PRO A 37 ? ? -69.83 -164.53 103 19 PRO A 72 ? ? -69.80 -172.32 104 19 ALA A 102 ? ? -41.66 156.57 105 19 PRO A 107 ? ? -69.85 89.19 106 20 PRO A 16 ? ? -69.81 -179.25 107 20 PRO A 37 ? ? -69.74 -177.00 108 20 ASP A 46 ? ? 37.56 40.39 109 20 PRO A 72 ? ? -69.82 -166.74 110 20 GLU A 104 ? ? -34.19 98.22 #