HEADER PROTEIN BINDING 24-APR-06 2DMZ TITLE SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF HUMAN INAD-LIKE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: INAD-LIKE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PDZ DOMAIN; COMPND 5 SYNONYM: INADL PROTEIN, HINADL, PALS1-ASSOCIATED TIGHT JUNCTION COMPND 6 PROTEIN, PROTEIN ASSOCIATED TO TIGHT JUNCTIONS; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: INADL, PATJ; SOURCE 6 EXPRESSION_SYSTEM: CELL FREE SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: P050627-17; SOURCE 9 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS PDZ DOMAIN, INAD-LIKE PROTEIN, INADL PROTEIN, HINADL, PALS1- KEYWDS 2 ASSOCIATED TIGHT JUNCTION PROTEIN, PROTEIN ASSOCIATED TO TIGHT KEYWDS 3 JUNCTIONS, INADL, PATJ, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 4 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 5 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 4 29-MAY-24 2DMZ 1 REMARK REVDAT 3 10-NOV-21 2DMZ 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DMZ 1 VERSN REVDAT 1 24-OCT-06 2DMZ 0 JRNL AUTH K.INOUE,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE THIRD PDZ DOMAIN OF HUMAN JRNL TITL 2 INAD-LIKE PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DMZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025605. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.26MM U-15N,13C-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL; 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.93191, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION,STRUCTURES WITH REMARK 210 THE LOWEST ENERGY,STRUCTURES REMARK 210 WITH THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D_15N_SEPARATED_NOESY; REMARK 210 SPECTROMETER_ID 2 FOR 3D_13C_SEPARATED_NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 5 46.74 34.38 REMARK 500 1 SER A 9 134.25 -34.99 REMARK 500 1 ASP A 10 43.67 -83.33 REMARK 500 1 SER A 12 75.71 -104.63 REMARK 500 1 LYS A 24 175.73 -50.63 REMARK 500 1 ASP A 25 83.21 -67.05 REMARK 500 1 THR A 39 177.09 -59.86 REMARK 500 1 VAL A 67 170.71 -50.09 REMARK 500 1 ASN A 78 86.73 -68.98 REMARK 500 1 SER A 110 167.56 -44.56 REMARK 500 1 SER A 112 151.37 -40.64 REMARK 500 1 PRO A 113 -167.31 -69.71 REMARK 500 1 THR A 122 39.59 34.06 REMARK 500 1 SER A 124 43.33 -93.64 REMARK 500 1 PRO A 126 1.25 -69.74 REMARK 500 2 ASP A 10 51.18 -113.68 REMARK 500 2 SER A 11 -179.03 -54.35 REMARK 500 2 SER A 12 93.10 -35.94 REMARK 500 2 LYS A 24 -179.60 -49.71 REMARK 500 2 SER A 40 63.97 -118.96 REMARK 500 2 GLU A 44 116.38 -35.57 REMARK 500 2 VAL A 67 173.00 -59.34 REMARK 500 2 ASN A 78 91.31 -68.82 REMARK 500 2 GLN A 80 96.52 -58.47 REMARK 500 2 THR A 107 140.92 -33.88 REMARK 500 2 SER A 108 116.37 -39.19 REMARK 500 2 SER A 112 152.43 -36.37 REMARK 500 2 PRO A 113 -166.47 -69.77 REMARK 500 2 PRO A 117 84.05 -69.74 REMARK 500 2 ASP A 119 -178.46 -69.16 REMARK 500 3 SER A 12 79.23 -103.10 REMARK 500 3 ASP A 25 85.91 -59.74 REMARK 500 3 GLU A 44 47.01 -78.00 REMARK 500 3 VAL A 67 171.68 -56.82 REMARK 500 3 ASN A 78 96.57 -62.88 REMARK 500 3 GLN A 80 92.47 -56.92 REMARK 500 3 THR A 107 140.23 -38.28 REMARK 500 3 SER A 108 172.88 -56.75 REMARK 500 3 PRO A 113 -171.13 -69.73 REMARK 500 3 SER A 118 40.03 -101.79 REMARK 500 3 SER A 124 135.79 -37.78 REMARK 500 4 ASP A 10 51.19 -113.67 REMARK 500 4 SER A 11 -61.30 -99.80 REMARK 500 4 SER A 12 67.68 -102.29 REMARK 500 4 LYS A 24 173.05 -53.48 REMARK 500 4 ASP A 25 89.14 -60.96 REMARK 500 4 THR A 39 36.70 -82.81 REMARK 500 4 VAL A 67 172.55 -52.60 REMARK 500 4 ASN A 78 94.05 -65.80 REMARK 500 4 GLN A 80 90.90 -59.92 REMARK 500 REMARK 500 THIS ENTRY HAS 234 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSO003006830.6 RELATED DB: TARGETDB DBREF 2DMZ A 8 123 UNP Q8NI35 INADL_HUMAN 355 470 SEQADV 2DMZ GLY A 1 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ SER A 2 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ SER A 3 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ GLY A 4 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ SER A 5 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ SER A 6 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ GLY A 7 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ VAL A 53 UNP Q8NI35 ILE 400 ENGINEERED MUTATION SEQADV 2DMZ SER A 124 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ GLY A 125 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ PRO A 126 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ SER A 127 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ SER A 128 UNP Q8NI35 CLONING ARTIFACT SEQADV 2DMZ GLY A 129 UNP Q8NI35 CLONING ARTIFACT SEQRES 1 A 129 GLY SER SER GLY SER SER GLY GLY SER ASP SER SER LEU SEQRES 2 A 129 PHE GLU THR TYR ASN VAL GLU LEU VAL ARG LYS ASP GLY SEQRES 3 A 129 GLN SER LEU GLY ILE ARG ILE VAL GLY TYR VAL GLY THR SEQRES 4 A 129 SER HIS THR GLY GLU ALA SER GLY ILE TYR VAL LYS SER SEQRES 5 A 129 VAL ILE PRO GLY SER ALA ALA TYR HIS ASN GLY HIS ILE SEQRES 6 A 129 GLN VAL ASN ASP LYS ILE VAL ALA VAL ASP GLY VAL ASN SEQRES 7 A 129 ILE GLN GLY PHE ALA ASN HIS ASP VAL VAL GLU VAL LEU SEQRES 8 A 129 ARG ASN ALA GLY GLN VAL VAL HIS LEU THR LEU VAL ARG SEQRES 9 A 129 ARG LYS THR SER SER SER THR SER PRO LEU GLU PRO PRO SEQRES 10 A 129 SER ASP ARG GLY THR VAL SER GLY PRO SER SER GLY HELIX 1 1 SER A 57 GLY A 63 1 7 HELIX 2 2 ALA A 83 ALA A 94 1 12 SHEET 1 A 3 PHE A 14 LEU A 21 0 SHEET 2 A 3 VAL A 98 ARG A 105 -1 O LEU A 100 N VAL A 19 SHEET 3 A 3 ILE A 71 VAL A 74 -1 N ALA A 73 O THR A 101 SHEET 1 B 2 ILE A 31 TYR A 36 0 SHEET 2 B 2 GLY A 47 VAL A 53 -1 O SER A 52 N ARG A 32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1