data_2DNF # _entry.id 2DNF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DNF pdb_00002dnf 10.2210/pdb2dnf/pdb RCSB RCSB025619 ? ? WWPDB D_1000025619 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id hsk002101128.1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DNF _pdbx_database_status.recvd_initial_deposition_date 2006-04-26 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ohashi, W.' 1 'Hirota, H.' 2 'Nagashima, T.' 3 'Hayashi, F.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title 'Solution structure of RSGI RUH-062, a DCX domain from human' _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ohashi, W.' 1 ? primary 'Hirota, H.' 2 ? primary 'Nagashima, T.' 3 ? primary 'Hayashi, F.' 4 ? primary 'Yokoyama, S.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Doublecortin domain-containing protein 2' _entity.formula_weight 11830.510 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'DCX domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RU2S protein, RUH-062' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSSGSSGRKPLQEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENG QFYVAVGRDKFKKLPYGELLFDSGPSSG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSSGSSGRKPLQEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENG QFYVAVGRDKFKKLPYGELLFDSGPSSG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier hsk002101128.1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ARG n 1 9 LYS n 1 10 PRO n 1 11 LEU n 1 12 GLN n 1 13 GLU n 1 14 PRO n 1 15 CYS n 1 16 THR n 1 17 ILE n 1 18 PHE n 1 19 LEU n 1 20 ILE n 1 21 ALA n 1 22 ASN n 1 23 GLY n 1 24 ASP n 1 25 LEU n 1 26 ILE n 1 27 ASN n 1 28 PRO n 1 29 ALA n 1 30 SER n 1 31 ARG n 1 32 LEU n 1 33 LEU n 1 34 ILE n 1 35 PRO n 1 36 ARG n 1 37 LYS n 1 38 THR n 1 39 LEU n 1 40 ASN n 1 41 GLN n 1 42 TRP n 1 43 ASP n 1 44 HIS n 1 45 VAL n 1 46 LEU n 1 47 GLN n 1 48 MET n 1 49 VAL n 1 50 THR n 1 51 GLU n 1 52 LYS n 1 53 ILE n 1 54 THR n 1 55 LEU n 1 56 ARG n 1 57 SER n 1 58 GLY n 1 59 ALA n 1 60 VAL n 1 61 HIS n 1 62 ARG n 1 63 LEU n 1 64 TYR n 1 65 THR n 1 66 LEU n 1 67 GLU n 1 68 GLY n 1 69 LYS n 1 70 LEU n 1 71 VAL n 1 72 GLU n 1 73 SER n 1 74 GLY n 1 75 ALA n 1 76 GLU n 1 77 LEU n 1 78 GLU n 1 79 ASN n 1 80 GLY n 1 81 GLN n 1 82 PHE n 1 83 TYR n 1 84 VAL n 1 85 ALA n 1 86 VAL n 1 87 GLY n 1 88 ARG n 1 89 ASP n 1 90 LYS n 1 91 PHE n 1 92 LYS n 1 93 LYS n 1 94 LEU n 1 95 PRO n 1 96 TYR n 1 97 GLY n 1 98 GLU n 1 99 LEU n 1 100 LEU n 1 101 PHE n 1 102 ASP n 1 103 SER n 1 104 GLY n 1 105 PRO n 1 106 SER n 1 107 SER n 1 108 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'DCDC2, KIAA1154' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'cell-free (E.Coli )' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DCDC2_HUMAN _struct_ref.pdbx_db_accession Q9UHG0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 132 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DNF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 8 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 102 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UHG0 _struct_ref_seq.db_align_beg 132 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 226 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 102 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DNF GLY A 1 ? UNP Q9UHG0 ? ? 'cloning artifact' 1 1 1 2DNF SER A 2 ? UNP Q9UHG0 ? ? 'cloning artifact' 2 2 1 2DNF SER A 3 ? UNP Q9UHG0 ? ? 'cloning artifact' 3 3 1 2DNF GLY A 4 ? UNP Q9UHG0 ? ? 'cloning artifact' 4 4 1 2DNF SER A 5 ? UNP Q9UHG0 ? ? 'cloning artifact' 5 5 1 2DNF SER A 6 ? UNP Q9UHG0 ? ? 'cloning artifact' 6 6 1 2DNF GLY A 7 ? UNP Q9UHG0 ? ? 'cloning artifact' 7 7 1 2DNF SER A 103 ? UNP Q9UHG0 ? ? 'cloning artifact' 103 8 1 2DNF GLY A 104 ? UNP Q9UHG0 ? ? 'cloning artifact' 104 9 1 2DNF PRO A 105 ? UNP Q9UHG0 ? ? 'cloning artifact' 105 10 1 2DNF SER A 106 ? UNP Q9UHG0 ? ? 'cloning artifact' 106 11 1 2DNF SER A 107 ? UNP Q9UHG0 ? ? 'cloning artifact' 107 12 1 2DNF GLY A 108 ? UNP Q9UHG0 ? ? 'cloning artifact' 108 13 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_13C-separated_NOESY 1 2 1 3D_15N-separated_NOESY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '1.12mM RUH-062 U-15N,13C; 20mM Tris U-2H; 100mM NaCl; 1mM DTT U-2H; 0.02% NaN3; 90% H2O, 10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 INOVA Varian 900 ? 2 INOVA Varian 800 ? # _pdbx_nmr_refine.entry_id 2DNF _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2DNF _pdbx_nmr_details.text 'spectrometer_id 1 for 3D-13C_separated NOESY and spectrometer_id 2 for 3D-15N_separated NOESY' # _pdbx_nmr_ensemble.entry_id 2DNF _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'The submitted conformer models are those with the lowest number of target function' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DNF _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest target function' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection VNMR 6.1C varian 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B.A.' 3 'data analysis' KUJIRA 0.9741 'Kobayashi, N.' 4 'structure solution' CYANA 2.0.17 'Guntert, P.' 5 refinement CYANA 2.0.17 'Guntert, P.' 6 # _exptl.entry_id 2DNF _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DNF _struct.title 'Solution structure of RSGI RUH-062, a DCX domain from human' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DNF _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text ;doublecortin, structural genomics, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, NPPSFA, National Project on Protein Structural and Functional Analyses, PROTEIN BINDING ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 35 ? ASN A 40 ? PRO A 35 ASN A 40 1 ? 6 HELX_P HELX_P2 2 GLN A 41 ? ILE A 53 ? GLN A 41 ILE A 53 1 ? 13 HELX_P HELX_P3 3 TYR A 96 ? PHE A 101 ? TYR A 96 PHE A 101 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 15 ? LEU A 19 ? CYS A 15 LEU A 19 A 2 SER A 30 ? ILE A 34 ? SER A 30 ILE A 34 B 1 LEU A 70 ? VAL A 71 ? LEU A 70 VAL A 71 B 2 ARG A 62 ? THR A 65 ? ARG A 62 THR A 65 B 3 TYR A 83 ? VAL A 86 ? TYR A 83 VAL A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 17 ? N ILE A 17 O LEU A 32 ? O LEU A 32 B 1 2 O VAL A 71 ? O VAL A 71 N LEU A 63 ? N LEU A 63 B 2 3 N ARG A 62 ? N ARG A 62 O VAL A 86 ? O VAL A 86 # _database_PDB_matrix.entry_id 2DNF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DNF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 THR 16 16 16 THR THR A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 PHE 18 18 18 PHE PHE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ASN 22 22 22 ASN ASN A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 PRO 28 28 28 PRO PRO A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 SER 30 30 30 SER SER A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ILE 34 34 34 ILE ILE A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 LYS 37 37 37 LYS LYS A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 HIS 44 44 44 HIS HIS A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 GLN 47 47 47 GLN GLN A . n A 1 48 MET 48 48 48 MET MET A . n A 1 49 VAL 49 49 49 VAL VAL A . n A 1 50 THR 50 50 50 THR THR A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 VAL 60 60 60 VAL VAL A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 ARG 62 62 62 ARG ARG A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 GLU 72 72 72 GLU GLU A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 PHE 82 82 82 PHE PHE A . n A 1 83 TYR 83 83 83 TYR TYR A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 PHE 91 91 91 PHE PHE A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 ASP 102 102 102 ASP ASP A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 PRO 105 105 105 PRO PRO A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 SER 107 107 107 SER SER A . n A 1 108 GLY 108 108 108 GLY GLY A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-10-26 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -67.18 95.58 2 1 SER A 5 ? ? -95.68 36.33 3 1 PRO A 10 ? ? -69.73 -178.21 4 1 LEU A 11 ? ? -58.80 105.21 5 1 PRO A 28 ? ? -69.78 -165.83 6 1 ARG A 88 ? ? -83.79 40.68 7 1 LYS A 93 ? ? -39.56 96.31 8 1 ASP A 102 ? ? -37.95 148.25 9 2 SER A 2 ? ? 70.15 41.95 10 2 PRO A 10 ? ? -69.71 -178.26 11 2 PRO A 28 ? ? -69.70 -171.00 12 2 SER A 73 ? ? -172.36 -178.16 13 2 LYS A 93 ? ? -48.38 94.23 14 2 ASP A 102 ? ? -37.31 154.97 15 3 SER A 2 ? ? 38.27 52.20 16 3 SER A 5 ? ? -99.86 46.08 17 3 PRO A 28 ? ? -69.73 -168.80 18 3 ARG A 31 ? ? -68.16 96.13 19 3 ARG A 88 ? ? -86.72 44.05 20 3 LYS A 92 ? ? -66.69 79.02 21 3 LYS A 93 ? ? -42.55 99.47 22 3 ASP A 102 ? ? -39.19 138.43 23 3 SER A 106 ? ? -51.30 88.20 24 4 SER A 2 ? ? -46.81 154.00 25 4 GLN A 12 ? ? -36.69 111.95 26 4 PRO A 28 ? ? -69.72 -167.62 27 4 ARG A 31 ? ? -55.46 96.44 28 4 ARG A 88 ? ? -86.75 39.41 29 4 LYS A 93 ? ? -56.93 91.16 30 4 PRO A 105 ? ? -69.79 92.56 31 5 PRO A 28 ? ? -69.78 -169.55 32 5 ARG A 31 ? ? -62.46 99.66 33 5 ARG A 88 ? ? -85.93 39.40 34 5 LYS A 90 ? ? -45.48 161.30 35 5 LYS A 93 ? ? -62.72 88.95 36 6 SER A 2 ? ? -164.91 118.78 37 6 SER A 5 ? ? -43.81 106.30 38 6 GLN A 12 ? ? 38.24 46.86 39 6 GLU A 13 ? ? -35.92 150.77 40 6 PRO A 28 ? ? -69.81 -168.20 41 6 ARG A 88 ? ? -83.41 40.95 42 6 LYS A 92 ? ? -69.21 80.76 43 6 LYS A 93 ? ? -42.79 101.97 44 7 SER A 2 ? ? 37.82 40.08 45 7 SER A 5 ? ? -93.17 40.51 46 7 PRO A 28 ? ? -69.77 -168.97 47 7 LYS A 93 ? ? -37.60 115.06 48 8 PRO A 10 ? ? -69.72 -169.58 49 8 LEU A 11 ? ? -69.08 81.51 50 8 PRO A 28 ? ? -69.72 -165.37 51 8 ARG A 31 ? ? -66.76 91.16 52 8 LEU A 77 ? ? -46.64 174.05 53 8 LYS A 93 ? ? -52.37 92.97 54 8 ASP A 102 ? ? -49.58 172.58 55 8 SER A 107 ? ? -55.16 106.49 56 9 ARG A 8 ? ? -102.85 41.41 57 9 PRO A 28 ? ? -69.70 -175.42 58 9 ARG A 31 ? ? -64.88 99.31 59 9 ARG A 88 ? ? -37.28 -28.45 60 9 LYS A 93 ? ? -61.51 99.09 61 9 ASP A 102 ? ? -34.44 121.31 62 9 PRO A 105 ? ? -69.77 81.31 63 10 PRO A 10 ? ? -69.75 -169.83 64 10 LEU A 11 ? ? -67.67 88.29 65 10 PRO A 28 ? ? -69.76 -168.04 66 10 ARG A 31 ? ? -65.94 97.68 67 10 ARG A 36 ? ? -69.30 1.12 68 10 ARG A 88 ? ? -98.48 46.82 69 10 LYS A 90 ? ? -51.20 -176.58 70 10 LYS A 93 ? ? -55.17 106.46 71 10 SER A 103 ? ? 37.71 27.45 72 11 SER A 6 ? ? -171.31 117.85 73 11 PRO A 10 ? ? -69.79 -174.27 74 11 PRO A 28 ? ? -69.77 -170.91 75 11 LYS A 93 ? ? -40.90 101.32 76 11 SER A 106 ? ? 39.33 35.29 77 12 PRO A 10 ? ? -69.78 -166.81 78 12 PRO A 28 ? ? -69.79 -166.45 79 12 ARG A 88 ? ? -91.63 42.89 80 12 LYS A 93 ? ? -47.57 88.98 81 13 SER A 3 ? ? -49.69 168.11 82 13 PRO A 10 ? ? -69.72 -170.47 83 13 GLN A 12 ? ? 37.18 43.05 84 13 PRO A 28 ? ? -69.76 -164.93 85 13 ARG A 31 ? ? -67.16 98.80 86 13 GLN A 41 ? ? -100.81 75.43 87 13 ALA A 59 ? ? -41.61 164.20 88 14 ARG A 8 ? ? -40.29 152.69 89 14 PRO A 10 ? ? -69.77 -165.30 90 14 PRO A 28 ? ? -69.79 -166.22 91 14 ARG A 88 ? ? -78.80 48.03 92 14 LYS A 93 ? ? -52.76 108.88 93 15 SER A 3 ? ? -38.94 157.04 94 15 PRO A 10 ? ? -69.81 -166.81 95 15 PRO A 28 ? ? -69.77 -171.32 96 15 ARG A 31 ? ? -57.67 102.48 97 16 GLN A 12 ? ? -93.88 -76.10 98 16 PRO A 28 ? ? -69.73 -168.43 99 16 ARG A 88 ? ? -98.90 45.35 100 16 LYS A 90 ? ? -36.22 152.85 101 16 LYS A 93 ? ? -46.60 104.86 102 16 PRO A 105 ? ? -69.80 83.47 103 16 SER A 106 ? ? -172.10 127.64 104 17 SER A 2 ? ? 36.10 44.11 105 17 PRO A 10 ? ? -69.81 -170.94 106 17 PRO A 28 ? ? -69.81 -177.76 107 17 GLU A 51 ? ? -38.52 -37.28 108 17 ARG A 88 ? ? -79.81 44.18 109 17 LYS A 93 ? ? -50.15 99.70 110 17 SER A 103 ? ? -134.16 -53.82 111 18 GLN A 12 ? ? -59.40 101.16 112 18 PRO A 28 ? ? -69.71 -167.36 113 18 ARG A 31 ? ? -52.87 94.61 114 18 HIS A 61 ? ? -132.27 -32.58 115 18 ARG A 88 ? ? -76.41 47.94 116 18 LYS A 92 ? ? -67.13 77.06 117 18 SER A 107 ? ? -51.11 170.22 118 19 PRO A 10 ? ? -69.78 -174.95 119 19 LEU A 11 ? ? -69.68 77.10 120 19 PRO A 28 ? ? -69.76 -168.55 121 19 ARG A 31 ? ? -49.36 105.98 122 19 ARG A 36 ? ? -36.22 -38.07 123 19 LEU A 77 ? ? -46.51 164.50 124 19 ARG A 88 ? ? -83.61 44.08 125 19 LYS A 90 ? ? -49.06 157.68 126 19 LYS A 93 ? ? -51.89 106.35 127 19 PRO A 105 ? ? -69.74 88.27 128 20 ARG A 8 ? ? -83.88 43.76 129 20 PRO A 28 ? ? -69.76 -170.81 130 20 LYS A 90 ? ? -59.68 175.19 131 20 SER A 103 ? ? -45.58 104.87 132 20 SER A 106 ? ? -45.97 105.05 #