HEADER PROTEIN BINDING 26-APR-06 2DNF TITLE SOLUTION STRUCTURE OF RSGI RUH-062, A DCX DOMAIN FROM HUMAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLECORTIN DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DCX DOMAIN; COMPND 5 SYNONYM: RU2S PROTEIN, RUH-062; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCDC2, KIAA1154; SOURCE 6 OTHER_DETAILS: CELL-FREE (E.COLI ) KEYWDS DOUBLECORTIN, STRUCTURAL GENOMICS, RIKEN STRUCTURAL KEYWDS 2 GENOMICS/PROTEOMICS INITIATIVE, RSGI, NPPSFA, NATIONAL PROJECT ON KEYWDS 3 PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.OHASHI,H.HIROTA,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 3 09-MAR-22 2DNF 1 REMARK SEQADV REVDAT 2 24-FEB-09 2DNF 1 VERSN REVDAT 1 26-OCT-06 2DNF 0 JRNL AUTH W.OHASHI,H.HIROTA,T.NAGASHIMA,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF RSGI RUH-062, A DCX DOMAIN FROM HUMAN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, CYANA 2.0.17 REMARK 3 AUTHORS : VARIAN (VNMR), GUNTERT, P. (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2DNF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-APR-06. REMARK 100 THE DEPOSITION ID IS D_1000025619. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.12MM RUH-062 U-15N,13C; 20MM REMARK 210 TRIS U-2H; 100MM NACL; 1MM DTT U- REMARK 210 2H; 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 20031121, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9741, CYANA 2.0.17 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE THOSE WITH THE LOWEST NUMBER REMARK 210 OF TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: SPECTROMETER_ID 1 FOR 3D-13C_SEPARATED NOESY AND REMARK 210 SPECTROMETER_ID 2 FOR 3D-15N_SEPARATED NOESY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 95.58 -67.18 REMARK 500 1 SER A 5 36.33 -95.68 REMARK 500 1 PRO A 10 -178.21 -69.73 REMARK 500 1 LEU A 11 105.21 -58.80 REMARK 500 1 PRO A 28 -165.83 -69.78 REMARK 500 1 ARG A 88 40.68 -83.79 REMARK 500 1 LYS A 93 96.31 -39.56 REMARK 500 1 ASP A 102 148.25 -37.95 REMARK 500 2 SER A 2 41.95 70.15 REMARK 500 2 PRO A 10 -178.26 -69.71 REMARK 500 2 PRO A 28 -171.00 -69.70 REMARK 500 2 SER A 73 -178.16 -172.36 REMARK 500 2 LYS A 93 94.23 -48.38 REMARK 500 2 ASP A 102 154.97 -37.31 REMARK 500 3 SER A 2 52.20 38.27 REMARK 500 3 SER A 5 46.08 -99.86 REMARK 500 3 PRO A 28 -168.80 -69.73 REMARK 500 3 ARG A 31 96.13 -68.16 REMARK 500 3 ARG A 88 44.05 -86.72 REMARK 500 3 LYS A 92 79.02 -66.69 REMARK 500 3 LYS A 93 99.47 -42.55 REMARK 500 3 ASP A 102 138.43 -39.19 REMARK 500 3 SER A 106 88.20 -51.30 REMARK 500 4 SER A 2 154.00 -46.81 REMARK 500 4 GLN A 12 111.95 -36.69 REMARK 500 4 PRO A 28 -167.62 -69.72 REMARK 500 4 ARG A 31 96.44 -55.46 REMARK 500 4 ARG A 88 39.41 -86.75 REMARK 500 4 LYS A 93 91.16 -56.93 REMARK 500 4 PRO A 105 92.56 -69.79 REMARK 500 5 PRO A 28 -169.55 -69.78 REMARK 500 5 ARG A 31 99.66 -62.46 REMARK 500 5 ARG A 88 39.40 -85.93 REMARK 500 5 LYS A 90 161.30 -45.48 REMARK 500 5 LYS A 93 88.95 -62.72 REMARK 500 6 SER A 2 118.78 -164.91 REMARK 500 6 SER A 5 106.30 -43.81 REMARK 500 6 GLN A 12 46.86 38.24 REMARK 500 6 GLU A 13 150.77 -35.92 REMARK 500 6 PRO A 28 -168.20 -69.81 REMARK 500 6 ARG A 88 40.95 -83.41 REMARK 500 6 LYS A 92 80.76 -69.21 REMARK 500 6 LYS A 93 101.97 -42.79 REMARK 500 7 SER A 2 40.08 37.82 REMARK 500 7 SER A 5 40.51 -93.17 REMARK 500 7 PRO A 28 -168.97 -69.77 REMARK 500 7 LYS A 93 115.06 -37.60 REMARK 500 8 PRO A 10 -169.58 -69.72 REMARK 500 8 LEU A 11 81.51 -69.08 REMARK 500 8 PRO A 28 -165.37 -69.72 REMARK 500 REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002101128.1 RELATED DB: TARGETDB DBREF 2DNF A 8 102 UNP Q9UHG0 DCDC2_HUMAN 132 226 SEQADV 2DNF GLY A 1 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF SER A 2 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF SER A 3 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF GLY A 4 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF SER A 5 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF SER A 6 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF GLY A 7 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF SER A 103 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF GLY A 104 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF PRO A 105 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF SER A 106 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF SER A 107 UNP Q9UHG0 CLONING ARTIFACT SEQADV 2DNF GLY A 108 UNP Q9UHG0 CLONING ARTIFACT SEQRES 1 A 108 GLY SER SER GLY SER SER GLY ARG LYS PRO LEU GLN GLU SEQRES 2 A 108 PRO CYS THR ILE PHE LEU ILE ALA ASN GLY ASP LEU ILE SEQRES 3 A 108 ASN PRO ALA SER ARG LEU LEU ILE PRO ARG LYS THR LEU SEQRES 4 A 108 ASN GLN TRP ASP HIS VAL LEU GLN MET VAL THR GLU LYS SEQRES 5 A 108 ILE THR LEU ARG SER GLY ALA VAL HIS ARG LEU TYR THR SEQRES 6 A 108 LEU GLU GLY LYS LEU VAL GLU SER GLY ALA GLU LEU GLU SEQRES 7 A 108 ASN GLY GLN PHE TYR VAL ALA VAL GLY ARG ASP LYS PHE SEQRES 8 A 108 LYS LYS LEU PRO TYR GLY GLU LEU LEU PHE ASP SER GLY SEQRES 9 A 108 PRO SER SER GLY HELIX 1 1 PRO A 35 ASN A 40 1 6 HELIX 2 2 GLN A 41 ILE A 53 1 13 HELIX 3 3 TYR A 96 PHE A 101 1 6 SHEET 1 A 2 CYS A 15 LEU A 19 0 SHEET 2 A 2 SER A 30 ILE A 34 -1 O LEU A 32 N ILE A 17 SHEET 1 B 3 LEU A 70 VAL A 71 0 SHEET 2 B 3 ARG A 62 THR A 65 -1 N LEU A 63 O VAL A 71 SHEET 3 B 3 TYR A 83 VAL A 86 -1 O VAL A 86 N ARG A 62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1