data_2DO6 # _entry.id 2DO6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DO6 pdb_00002do6 10.2210/pdb2do6/pdb RCSB RCSB025644 ? ? WWPDB D_1000025644 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DO6 _pdbx_database_status.recvd_initial_deposition_date 2006-04-27 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hamada, T.' 1 'Hirota, H.' 2 'Lin, Y.-J.' 3 'Guntert, P.' 4 'Sato, M.' 5 'Koshiba, S.' 6 'Kigawa, T.' 7 'Yokoyama, S.' 8 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 9 # _citation.id primary _citation.title 'Solution structure of RSGI RUH-065, a UBA domain from human cDNA' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hamada, T.' 1 ? primary 'Lin, Y.-J.' 2 ? primary 'Sato, M.' 3 ? primary 'Koshiba, S.' 4 ? primary 'Inoue, M.' 5 ? primary 'Kigawa, T.' 6 ? primary 'Hayashi, F.' 7 ? primary 'Muto, Y.' 8 ? primary 'Yoshida, M.' 9 ? primary 'Akasaka, R.' 10 ? primary 'Kukimoto, M.' 11 ? primary 'Terada, T.' 12 ? primary 'Shirouzu, M.' 13 ? primary 'Tanaka, A.' 14 ? primary 'Guntert, P.' 15 ? primary 'Yokoyama, S.' 16 ? primary 'Hirota, H.' 17 ? # _cell.entry_id 2DO6 _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2DO6 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'E3 ubiquitin-protein ligase CBL-B' _entity.formula_weight 5521.095 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec 6.3.2.- _entity.pdbx_mutation ? _entity.pdbx_fragment 'UBA domain' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Signal transduction protein CBL-B, SH3-binding protein CBL-B, Casitas B-lineage lymphoma proto-oncogene b, RING finger protein 56, RSGI RUH-065 ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GSSGSSGNVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREFSGPSSG _entity_poly.pdbx_seq_one_letter_code_can GSSGSSGNVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREFSGPSSG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 ASN n 1 9 VAL n 1 10 ASP n 1 11 ALA n 1 12 LYS n 1 13 ILE n 1 14 ALA n 1 15 LYS n 1 16 LEU n 1 17 MET n 1 18 GLY n 1 19 GLU n 1 20 GLY n 1 21 TYR n 1 22 ALA n 1 23 PHE n 1 24 GLU n 1 25 GLU n 1 26 VAL n 1 27 LYS n 1 28 ARG n 1 29 ALA n 1 30 LEU n 1 31 GLU n 1 32 ILE n 1 33 ALA n 1 34 GLN n 1 35 ASN n 1 36 ASN n 1 37 VAL n 1 38 GLU n 1 39 VAL n 1 40 ALA n 1 41 ARG n 1 42 SER n 1 43 ILE n 1 44 LEU n 1 45 ARG n 1 46 GLU n 1 47 PHE n 1 48 SER n 1 49 GLY n 1 50 PRO n 1 51 SER n 1 52 SER n 1 53 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'CBLB, RNF56' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name P050620-17 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description 'Cell-free protein synthesis' # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CBLB_HUMAN _struct_ref.pdbx_db_accession Q13191 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code NVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF _struct_ref.pdbx_align_begin 931 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2DO6 A 8 ? 47 ? Q13191 931 ? 970 ? 8 47 2 1 2DO6 B 8 ? 47 ? Q13191 931 ? 970 ? 8 47 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2DO6 GLY A 1 ? UNP Q13191 ? ? 'cloning artifact' 1 1 1 2DO6 SER A 2 ? UNP Q13191 ? ? 'cloning artifact' 2 2 1 2DO6 SER A 3 ? UNP Q13191 ? ? 'cloning artifact' 3 3 1 2DO6 GLY A 4 ? UNP Q13191 ? ? 'cloning artifact' 4 4 1 2DO6 SER A 5 ? UNP Q13191 ? ? 'cloning artifact' 5 5 1 2DO6 SER A 6 ? UNP Q13191 ? ? 'cloning artifact' 6 6 1 2DO6 GLY A 7 ? UNP Q13191 ? ? 'cloning artifact' 7 7 1 2DO6 SER A 48 ? UNP Q13191 ? ? 'cloning artifact' 48 8 1 2DO6 GLY A 49 ? UNP Q13191 ? ? 'cloning artifact' 49 9 1 2DO6 PRO A 50 ? UNP Q13191 ? ? 'cloning artifact' 50 10 1 2DO6 SER A 51 ? UNP Q13191 ? ? 'cloning artifact' 51 11 1 2DO6 SER A 52 ? UNP Q13191 ? ? 'cloning artifact' 52 12 1 2DO6 GLY A 53 ? UNP Q13191 ? ? 'cloning artifact' 53 13 2 2DO6 GLY B 1 ? UNP Q13191 ? ? 'cloning artifact' 1 14 2 2DO6 SER B 2 ? UNP Q13191 ? ? 'cloning artifact' 2 15 2 2DO6 SER B 3 ? UNP Q13191 ? ? 'cloning artifact' 3 16 2 2DO6 GLY B 4 ? UNP Q13191 ? ? 'cloning artifact' 4 17 2 2DO6 SER B 5 ? UNP Q13191 ? ? 'cloning artifact' 5 18 2 2DO6 SER B 6 ? UNP Q13191 ? ? 'cloning artifact' 6 19 2 2DO6 GLY B 7 ? UNP Q13191 ? ? 'cloning artifact' 7 20 2 2DO6 SER B 48 ? UNP Q13191 ? ? 'cloning artifact' 48 21 2 2DO6 GLY B 49 ? UNP Q13191 ? ? 'cloning artifact' 49 22 2 2DO6 PRO B 50 ? UNP Q13191 ? ? 'cloning artifact' 50 23 2 2DO6 SER B 51 ? UNP Q13191 ? ? 'cloning artifact' 51 24 2 2DO6 SER B 52 ? UNP Q13191 ? ? 'cloning artifact' 52 25 2 2DO6 GLY B 53 ? UNP Q13191 ? ? 'cloning artifact' 53 26 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 3D_15N-separated_NOESY 1 2 1 3D_13C-separated_NOESY 1 3 1 3D_13C_F1-filtered_F3-edited_NOESY 2 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100mM NaCl' _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1.1mM UBA domain U-15N,13C, 20mM d-Tris-HCl buffer (pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '1.0mM UBA domain U-15N,13C, 1.0mM UBA domain, 20mM d-Tris-HCl buffer (pH 7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 100% D2O' '100% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.type ? # _pdbx_nmr_refine.entry_id 2DO6 _pdbx_nmr_refine.method 'torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 2DO6 _pdbx_nmr_details.text 'This structure was determined using 3D NMR techniques' # _pdbx_nmr_ensemble.entry_id 2DO6 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function, structures with the lowest energy, structures with the least restraint violations' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2DO6 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal collection XwinNMR 2.6 Bruker 1 processing NMRPipe 20031121 'Delaglio, F.' 2 'data analysis' NMRView 5.0.4 'Johnson, B. A.' 3 'data analysis' KUJIRA 0.9295 'Kobayashi, N.' 4 'structure solution' CYANA 2.2.2 'Guntert, P. et al.' 5 refinement OPALp 1.4 'Koradi, R., Billeter, M., Guntert, P.' 6 # _exptl.entry_id 2DO6 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 2DO6 _struct.title 'Solution structure of RSGI RUH-065, a UBA domain from human cDNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DO6 _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ;UBA domain, dimer, protein binding, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, LIGASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 9 ? GLY A 18 ? VAL A 9 GLY A 18 1 ? 10 HELX_P HELX_P2 2 ALA A 22 ? ALA A 33 ? ALA A 22 ALA A 33 1 ? 12 HELX_P HELX_P3 3 ASN A 36 ? SER A 48 ? ASN A 36 SER A 48 1 ? 13 HELX_P HELX_P4 4 VAL B 9 ? MET B 17 ? VAL B 9 MET B 17 1 ? 9 HELX_P HELX_P5 5 ALA B 22 ? ALA B 33 ? ALA B 22 ALA B 33 1 ? 12 HELX_P HELX_P6 6 ASN B 36 ? SER B 48 ? ASN B 36 SER B 48 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 2DO6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DO6 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 ASN 8 8 8 ASN ASN A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 MET 17 17 17 MET MET A . n A 1 18 GLY 18 18 18 GLY GLY A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 TYR 21 21 21 TYR TYR A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 PHE 23 23 23 PHE PHE A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 ARG 28 28 28 ARG ARG A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 ILE 32 32 32 ILE ILE A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 GLU 38 38 38 GLU GLU A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 GLY 53 53 53 GLY GLY A . n B 1 1 GLY 1 1 1 GLY GLY B . n B 1 2 SER 2 2 2 SER SER B . n B 1 3 SER 3 3 3 SER SER B . n B 1 4 GLY 4 4 4 GLY GLY B . n B 1 5 SER 5 5 5 SER SER B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 GLY 7 7 7 GLY GLY B . n B 1 8 ASN 8 8 8 ASN ASN B . n B 1 9 VAL 9 9 9 VAL VAL B . n B 1 10 ASP 10 10 10 ASP ASP B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 ALA 14 14 14 ALA ALA B . n B 1 15 LYS 15 15 15 LYS LYS B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 MET 17 17 17 MET MET B . n B 1 18 GLY 18 18 18 GLY GLY B . n B 1 19 GLU 19 19 19 GLU GLU B . n B 1 20 GLY 20 20 20 GLY GLY B . n B 1 21 TYR 21 21 21 TYR TYR B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 PHE 23 23 23 PHE PHE B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 GLU 25 25 25 GLU GLU B . n B 1 26 VAL 26 26 26 VAL VAL B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 ARG 28 28 28 ARG ARG B . n B 1 29 ALA 29 29 29 ALA ALA B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 GLU 31 31 31 GLU GLU B . n B 1 32 ILE 32 32 32 ILE ILE B . n B 1 33 ALA 33 33 33 ALA ALA B . n B 1 34 GLN 34 34 34 GLN GLN B . n B 1 35 ASN 35 35 35 ASN ASN B . n B 1 36 ASN 36 36 36 ASN ASN B . n B 1 37 VAL 37 37 37 VAL VAL B . n B 1 38 GLU 38 38 38 GLU GLU B . n B 1 39 VAL 39 39 39 VAL VAL B . n B 1 40 ALA 40 40 40 ALA ALA B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 SER 42 42 42 SER SER B . n B 1 43 ILE 43 43 43 ILE ILE B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 PHE 47 47 47 PHE PHE B . n B 1 48 SER 48 48 48 SER SER B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 PRO 50 50 50 PRO PRO B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 SER 52 52 52 SER SER B . n B 1 53 GLY 53 53 53 GLY GLY B . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.initial_of_center RSGI # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-05-08 2 'Structure model' 1 1 2008-04-30 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_nmr_spectrometer 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list 6 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' 5 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 20 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 46 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 HG _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 51 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.54 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 12 NE B ARG 41 ? ? CZ B ARG 41 ? ? NH2 B ARG 41 ? ? 116.90 120.30 -3.40 0.50 N 2 16 NE B ARG 41 ? ? CZ B ARG 41 ? ? NH1 B ARG 41 ? ? 123.44 120.30 3.14 0.50 N 3 20 NE B ARG 45 ? ? CZ B ARG 45 ? ? NH2 B ARG 45 ? ? 117.20 120.30 -3.10 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? ? 48.84 -164.43 2 1 VAL A 9 ? ? -120.27 -52.70 3 1 ALA A 33 ? ? -66.75 12.76 4 1 SER B 6 ? ? 44.98 -118.20 5 1 SER B 48 ? ? -124.86 -60.92 6 2 SER A 2 ? ? 57.09 -167.20 7 2 SER A 6 ? ? 49.41 -134.14 8 2 ALA A 33 ? ? -66.69 12.47 9 2 SER B 2 ? ? 70.87 171.11 10 2 SER B 6 ? ? 69.31 172.41 11 3 SER A 2 ? ? -135.86 -36.59 12 3 VAL A 9 ? ? -135.65 -30.07 13 3 SER B 2 ? ? -117.52 -76.82 14 3 SER B 5 ? ? 54.10 18.27 15 3 ASN B 8 ? ? -46.29 109.33 16 4 SER A 5 ? ? -154.21 -135.01 17 4 SER A 6 ? ? -69.91 -179.37 18 4 ALA A 33 ? ? -67.54 7.67 19 4 SER B 5 ? ? -117.31 -77.03 20 4 ASN B 35 ? ? 59.95 17.83 21 5 SER A 6 ? ? -160.21 -160.27 22 5 ASN A 8 ? ? -20.01 96.28 23 5 ALA B 33 ? ? -67.79 9.76 24 6 SER A 48 ? ? -113.41 -70.57 25 6 SER B 5 ? ? -76.90 39.49 26 6 ALA B 33 ? ? -67.20 3.59 27 6 SER B 48 ? ? -89.02 -76.94 28 7 SER A 48 ? ? -88.71 -77.36 29 7 SER A 51 ? ? -140.32 41.66 30 7 SER A 52 ? ? 44.78 70.55 31 7 SER B 6 ? ? -152.54 1.31 32 7 ALA B 33 ? ? -65.99 4.37 33 7 SER B 48 ? ? -82.00 -72.41 34 8 ALA A 33 ? ? -69.39 4.67 35 8 SER A 48 ? ? -100.12 78.50 36 9 ASN A 8 ? ? 5.52 93.82 37 9 SER A 48 ? ? -132.11 -62.33 38 9 PRO A 50 ? ? -64.50 -175.25 39 9 SER A 51 ? ? -116.22 -73.71 40 9 SER A 52 ? ? 56.33 -165.65 41 9 ALA B 33 ? ? -66.85 6.87 42 9 SER B 48 ? ? -83.07 -91.60 43 9 SER B 52 ? ? 64.87 161.91 44 10 VAL A 9 ? ? -124.52 -52.41 45 10 VAL B 9 ? ? -127.26 -55.04 46 11 SER A 2 ? ? -173.25 127.62 47 11 SER A 6 ? ? -156.82 28.05 48 11 ASN A 8 ? ? 62.80 161.01 49 11 VAL A 9 ? ? -146.92 -55.22 50 11 ALA A 33 ? ? -66.77 6.22 51 11 SER A 48 ? ? -88.84 -123.17 52 11 SER B 3 ? ? -158.70 -93.13 53 11 SER B 6 ? ? -170.88 -41.34 54 11 ASN B 8 ? ? 77.79 130.27 55 12 SER A 3 ? ? -140.06 -27.42 56 12 ASN A 8 ? ? 63.29 165.48 57 12 VAL A 9 ? ? -137.30 -44.36 58 12 ALA A 33 ? ? -64.97 4.70 59 12 SER B 3 ? ? -151.47 -7.57 60 12 ASN B 8 ? ? 67.06 168.76 61 12 VAL B 9 ? ? -139.04 -47.67 62 12 ASN B 35 ? ? 58.02 15.28 63 13 SER A 6 ? ? -174.27 -170.97 64 13 VAL A 9 ? ? -123.28 -54.30 65 13 SER A 48 ? ? -79.24 -72.78 66 13 SER B 2 ? ? -144.09 -73.71 67 13 VAL B 9 ? ? -136.68 -48.35 68 14 ALA A 33 ? ? -65.30 12.43 69 14 SER A 48 ? ? -76.23 -85.74 70 14 SER A 52 ? ? -142.93 38.76 71 14 ALA B 33 ? ? -69.08 3.59 72 14 SER B 48 ? ? -80.18 -76.54 73 15 SER A 2 ? ? -159.49 62.97 74 15 SER A 6 ? ? -139.16 -88.37 75 15 ASN A 8 ? ? -36.19 129.57 76 15 ALA A 33 ? ? -69.45 3.27 77 15 SER A 48 ? ? -84.14 30.80 78 15 SER A 51 ? ? -126.60 -77.08 79 15 ALA B 33 ? ? -69.86 14.76 80 15 SER B 48 ? ? -90.48 52.14 81 15 SER B 51 ? ? -149.23 -50.58 82 15 SER B 52 ? ? -151.19 25.57 83 16 SER A 2 ? ? -158.84 -73.70 84 16 SER A 6 ? ? 59.80 179.99 85 16 VAL A 9 ? ? -131.70 -62.74 86 16 ALA A 33 ? ? -69.97 9.55 87 16 SER A 51 ? ? -148.53 35.65 88 16 SER A 52 ? ? 63.91 170.88 89 16 SER B 3 ? ? -132.61 -53.16 90 16 SER B 6 ? ? 60.19 174.28 91 16 ALA B 33 ? ? -66.17 13.18 92 16 SER B 52 ? ? 63.14 171.76 93 17 SER A 3 ? ? 79.25 -6.54 94 17 VAL A 9 ? ? -136.08 -53.92 95 17 SER A 48 ? ? -115.20 51.34 96 17 SER A 51 ? ? 59.80 176.47 97 17 VAL B 9 ? ? -125.28 -57.15 98 17 ALA B 33 ? ? -68.29 4.91 99 17 SER B 48 ? ? -117.43 72.77 100 17 SER B 51 ? ? 77.21 137.17 101 18 SER A 6 ? ? -122.57 -149.90 102 18 VAL A 9 ? ? -133.15 -55.66 103 18 ALA A 33 ? ? -69.44 10.18 104 18 SER A 48 ? ? -135.67 -118.15 105 18 ALA B 33 ? ? -68.90 10.22 106 18 SER B 48 ? ? -108.30 -71.50 107 19 SER A 2 ? ? -168.30 87.62 108 19 SER A 52 ? ? -148.58 32.03 109 19 SER B 48 ? ? -123.96 -55.12 110 19 SER B 51 ? ? -161.59 -98.25 111 20 ALA A 33 ? ? -68.74 5.73 112 20 ALA B 33 ? ? -67.48 13.78 113 20 SER B 48 ? ? -117.97 60.10 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 4 ARG B 45 ? ? 0.114 'SIDE CHAIN' 2 5 ARG A 45 ? ? 0.076 'SIDE CHAIN' 3 8 ARG A 41 ? ? 0.077 'SIDE CHAIN' 4 11 ARG A 28 ? ? 0.080 'SIDE CHAIN' 5 13 ARG A 28 ? ? 0.076 'SIDE CHAIN' 6 13 TYR B 21 ? ? 0.082 'SIDE CHAIN' 7 15 ARG B 45 ? ? 0.113 'SIDE CHAIN' 8 18 ARG A 45 ? ? 0.093 'SIDE CHAIN' 9 20 ARG A 45 ? ? 0.136 'SIDE CHAIN' #